Wall clock time and date at job start Fri Apr 10 2020 17:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 N 1.46496 * 109.46942 * 240.00180 * 2 1 3 5 5 C 1.36220 * 125.86477 * 35.02129 * 4 2 1 6 6 C 1.35301 * 108.88191 * 179.97438 * 5 4 2 7 7 C 1.40854 * 108.22784 * 0.02562 * 6 5 4 8 8 N 1.33378 * 126.35887 * 179.97438 * 7 6 5 9 9 C 1.33181 * 119.99349 * 0.02751 * 8 7 6 10 10 O 1.21745 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.49242 * 119.99611 * 180.02562 * 9 8 7 12 12 O 1.21381 * 120.00089 * 354.15746 * 11 9 8 13 13 N 1.34774 * 119.99940 * 174.16332 * 11 9 8 14 14 C 1.46498 * 119.99645 * 3.61253 * 13 11 9 15 15 C 1.46496 * 120.00083 * 183.61147 * 13 11 9 16 16 H 1.09004 * 109.47021 * 0.02562 * 15 13 11 17 17 C 1.53001 * 109.46884 * 119.99762 * 15 13 11 18 18 C 1.50693 * 109.47541 * 239.99971 * 15 13 11 19 19 H 1.08006 * 119.99715 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00354 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00108 * 179.97438 * 20 18 15 22 22 Si 1.86797 * 119.99952 * 0.02562 * 20 18 15 23 23 H 1.48496 * 109.47515 * 89.99944 * 22 20 18 24 24 H 1.48498 * 109.47160 * 209.99908 * 22 20 18 25 25 H 1.48500 * 109.47014 * 329.99746 * 22 20 18 26 26 N 1.37291 * 107.29033 * 359.77044 * 7 6 5 27 27 H 0.96999 * 126.33984 * 180.22411 * 26 7 6 28 28 H 1.08996 * 109.46859 * 300.00132 * 1 2 3 29 29 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46996 * 60.00244 * 1 2 3 31 31 H 1.09001 * 109.46996 * 119.99756 * 2 1 3 32 32 H 1.08996 * 109.47589 * 60.00316 * 3 2 1 33 33 H 1.09007 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47214 * 299.99622 * 3 2 1 35 35 H 1.08000 * 125.55740 * 359.94573 * 5 4 2 36 36 H 1.07997 * 125.88839 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47225 * 83.98945 * 14 13 11 38 38 H 1.09006 * 109.46693 * 203.98993 * 14 13 11 39 39 H 1.09000 * 109.47468 * 323.97980 * 14 13 11 40 40 H 1.08994 * 109.47491 * 60.00384 * 17 15 13 41 41 H 1.09006 * 109.46896 * 179.97438 * 17 15 13 42 42 H 1.09004 * 109.47432 * 299.99771 * 17 15 13 43 43 H 0.97003 * 120.00142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.4320 -0.6688 -2.4255 6 6 2.1687 -1.4207 -3.2754 7 6 3.2661 -1.9431 -2.5634 8 7 4.2221 -2.7340 -3.0528 9 6 4.1923 -3.1008 -4.3328 10 8 3.2923 -2.7145 -5.0559 11 6 5.2616 -3.9863 -4.8802 12 8 6.2140 -4.2859 -4.1899 13 7 5.1699 -4.4532 -6.1412 14 6 4.0622 -4.0285 -7.0007 15 6 6.1778 -5.3853 -6.6523 16 1 6.9166 -5.5833 -5.8756 17 6 5.5011 -6.6962 -7.0578 18 6 6.8596 -4.7799 -7.8521 19 1 6.5706 -3.7989 -8.1995 20 6 7.8522 -5.4781 -8.5064 21 7 8.4468 -4.9499 -9.5538 22 14 8.3515 -7.1751 -7.9060 23 1 7.5238 -8.2039 -8.5853 24 1 9.7847 -7.4083 -8.2171 25 1 8.1431 -7.2620 -6.4383 26 7 3.1717 -1.4832 -1.2733 27 1 3.7881 -1.6731 -0.5488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5264 -0.1381 -2.6801 36 1 1.9527 -1.5912 -4.3198 37 1 4.3089 -3.0744 -7.4664 38 1 3.8946 -4.7779 -7.7743 39 1 3.1588 -3.9173 -6.4009 40 1 4.7621 -6.4987 -7.8342 41 1 6.2510 -7.3897 -7.4385 42 1 5.0080 -7.1343 -6.1899 43 1 9.1449 -5.4413 -10.0143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361913605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:52 Heat of formation + Delta-G solvation = 72.261530 kcal Electronic energy + Delta-G solvation = -25352.340537 eV Core-core repulsion = 21630.502719 eV Total energy + Delta-G solvation = -3721.837817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82877 -39.67206 -37.79938 -36.34675 -35.34928 -33.30909 -32.38760 -31.90933 -30.15680 -29.29939 -28.11053 -26.00585 -25.16349 -24.66948 -23.06338 -22.05410 -21.62169 -19.96250 -18.35665 -17.88466 -16.63843 -16.47807 -16.04022 -16.00242 -15.54518 -15.35135 -15.16139 -14.82697 -14.46489 -14.08151 -13.80288 -13.63658 -13.14250 -13.08264 -12.99082 -12.81596 -12.68555 -12.20769 -12.09125 -11.99369 -11.91921 -11.61163 -11.45453 -10.97208 -10.76568 -10.54610 -10.34171 -9.98139 -9.83970 -9.50546 -9.16951 -9.07792 -8.49799 -8.21558 -7.73798 -7.42903 -6.00357 -3.99781 0.74610 0.93742 2.10941 3.12880 3.21647 3.34698 3.47253 3.51939 3.73327 3.86858 4.03046 4.16977 4.21298 4.48368 4.49208 4.70444 4.75586 4.88821 4.94157 4.95603 5.14874 5.16353 5.32329 5.35474 5.37499 5.76666 5.93517 6.21451 6.38365 6.42004 6.49070 6.54033 6.64185 6.79243 6.81449 7.00550 7.13754 7.26496 7.50921 7.68684 7.79543 8.29908 8.63179 8.77804 9.02949 9.17060 9.60858 11.12619 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038072 B = 0.002705 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.275096 B =10349.522908 C =10488.942437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.173 4.173 4 N -0.382 5.382 5 C 0.146 3.854 6 C -0.298 4.298 7 C 0.480 3.520 8 N -0.644 5.644 9 C 0.498 3.502 10 O -0.545 6.545 11 C 0.511 3.489 12 O -0.522 6.522 13 N -0.564 5.564 14 C 0.080 3.920 15 C 0.227 3.773 16 H 0.063 0.937 17 C -0.161 4.161 18 C -0.522 4.522 19 H 0.080 0.920 20 C 0.074 3.926 21 N -0.897 5.897 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.262 1.262 26 N -0.476 5.476 27 H 0.449 0.551 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.481 12.969 21.999 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.231 4.231 4 N -0.174 5.174 5 C 0.009 3.991 6 C -0.329 4.329 7 C 0.226 3.774 8 N -0.404 5.404 9 C 0.281 3.719 10 O -0.424 6.424 11 C 0.293 3.707 12 O -0.399 6.399 13 N -0.296 5.296 14 C -0.063 4.063 15 C 0.125 3.875 16 H 0.081 0.919 17 C -0.218 4.218 18 C -0.560 4.560 19 H 0.098 0.902 20 C -0.128 4.128 21 N -0.535 5.535 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.187 1.187 26 N -0.202 5.202 27 H 0.297 0.703 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.209 0.791 36 H 0.211 0.789 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.635 12.737 22.501 33.081 hybrid contribution 0.235 -0.697 0.025 0.736 sum -20.400 12.040 22.526 32.689 Atomic orbital electron populations 1.22216 0.91773 1.04011 1.04262 1.21528 0.95607 0.92832 0.84543 1.22369 1.02565 0.94421 1.03763 1.46899 1.15990 1.43800 1.10745 1.22800 0.97491 0.96488 0.82361 1.22877 0.98553 1.07727 1.03788 1.19339 0.89561 0.86176 0.82282 1.68968 1.28194 1.26156 1.17055 1.20981 0.85021 0.81249 0.84604 1.90491 1.36562 1.53136 1.62241 1.19473 0.86520 0.82143 0.82600 1.90652 1.32601 1.57972 1.58646 1.47806 1.26853 1.44223 1.10762 1.22086 0.89643 0.99609 0.94980 1.19367 0.86656 0.85346 0.96164 0.91923 1.22457 1.00662 0.98762 0.99964 1.21182 1.19021 1.04962 1.10825 0.90240 1.24864 0.95518 0.97937 0.94523 1.69886 1.25512 1.38292 1.19853 0.86911 0.76790 0.84728 0.80254 1.20430 1.22231 1.18694 1.44361 1.18769 1.45221 1.11839 0.70293 0.89435 0.90963 0.90939 0.88201 0.90052 0.91569 0.91188 0.79097 0.78929 0.93251 0.91898 0.89271 0.92349 0.93131 0.94722 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.09 8.84 37.16 0.33 0.23 16 2 C 0.16 0.34 3.93 -67.93 -0.27 0.07 16 3 C -0.17 -0.33 9.52 37.16 0.35 0.02 16 4 N -0.38 -2.26 3.56 -54.54 -0.19 -2.46 16 5 C 0.15 0.97 10.57 -16.65 -0.18 0.79 16 6 C -0.30 -3.52 9.52 -39.64 -0.38 -3.90 16 7 C 0.48 6.85 8.07 -155.16 -1.25 5.59 16 8 N -0.64 -12.48 10.34 -11.99 -0.12 -12.61 16 9 C 0.50 10.77 7.66 -12.39 -0.09 10.67 16 10 O -0.54 -10.98 10.05 5.15 0.05 -10.93 16 11 C 0.51 12.77 7.73 -11.68 -0.09 12.68 16 12 O -0.52 -14.50 16.24 5.47 0.09 -14.41 16 13 N -0.56 -13.96 2.75 -175.85 -0.48 -14.44 16 14 C 0.08 1.69 8.75 59.85 0.52 2.22 16 15 C 0.23 6.09 2.22 -69.09 -0.15 5.94 16 16 H 0.06 1.83 5.96 -51.93 -0.31 1.52 16 17 C -0.16 -3.80 8.66 37.16 0.32 -3.47 16 18 C -0.52 -15.67 8.95 -34.45 -0.31 -15.98 16 19 H 0.08 2.58 7.89 -52.48 -0.41 2.17 16 20 C 0.07 2.23 5.45 -17.82 -0.10 2.13 16 21 N -0.90 -28.41 13.96 55.43 0.77 -27.63 16 22 Si 0.88 23.06 24.37 -169.99 -4.14 18.92 16 23 H -0.28 -6.89 6.87 56.52 0.39 -6.50 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.26 -6.78 6.53 56.52 0.37 -6.41 16 26 N -0.48 -4.37 7.37 31.31 0.23 -4.14 16 27 H 0.45 3.22 8.96 -182.56 -1.64 1.58 16 28 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.00 7.13 -51.93 -0.37 -0.37 16 31 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.19 0.43 7.23 -52.49 -0.38 0.05 16 36 H 0.19 2.64 5.77 -52.49 -0.30 2.33 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.28 6.44 -51.93 -0.33 0.94 16 39 H 0.09 1.75 5.35 -51.94 -0.28 1.47 16 40 H 0.06 1.29 6.67 -51.93 -0.35 0.94 16 41 H 0.05 1.22 3.27 -51.93 -0.17 1.05 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -40.48 347.11 -6.96 -47.45 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.10 Total: -1.98 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -1.29 Total: 17.00 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.20 Total: -61.28 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: 0.14 Total: -25.33 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.14 Total: 18.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -40.48 -6.96 -47.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361913605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.708 kcal (2) G-P(sol) polarization free energy of solvation -40.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds