Wall clock time and date at job start Fri Apr 10 2020 17:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 N 1.46496 * 109.46942 * 240.00180 * 2 1 3 5 5 C 1.36220 * 125.86477 * 35.02129 * 4 2 1 6 6 C 1.35301 * 108.88191 * 179.97438 * 5 4 2 7 7 C 1.40854 * 108.22784 * 0.02562 * 6 5 4 8 8 N 1.33378 * 126.35887 * 179.97438 * 7 6 5 9 9 C 1.33181 * 119.99349 * 0.02751 * 8 7 6 10 10 O 1.21745 * 119.99946 * 359.97438 * 9 8 7 11 11 C 1.49242 * 119.99611 * 180.02562 * 9 8 7 12 12 O 1.21381 * 120.00089 * 354.15746 * 11 9 8 13 13 N 1.34774 * 119.99940 * 174.16332 * 11 9 8 14 14 C 1.46498 * 119.99645 * 3.61253 * 13 11 9 15 15 C 1.46496 * 120.00083 * 183.61147 * 13 11 9 16 16 H 1.09004 * 109.47021 * 0.02562 * 15 13 11 17 17 C 1.53001 * 109.46884 * 119.99762 * 15 13 11 18 18 C 1.50693 * 109.47541 * 239.99971 * 15 13 11 19 19 H 1.08006 * 119.99715 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00354 * 179.97438 * 18 15 13 21 21 N 1.31515 * 120.00108 * 179.97438 * 20 18 15 22 22 Si 1.86797 * 119.99952 * 0.02562 * 20 18 15 23 23 H 1.48496 * 109.47515 * 89.99944 * 22 20 18 24 24 H 1.48498 * 109.47160 * 209.99908 * 22 20 18 25 25 H 1.48500 * 109.47014 * 329.99746 * 22 20 18 26 26 N 1.37291 * 107.29033 * 359.77044 * 7 6 5 27 27 H 0.96999 * 126.33984 * 180.22411 * 26 7 6 28 28 H 1.08996 * 109.46859 * 300.00132 * 1 2 3 29 29 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46996 * 60.00244 * 1 2 3 31 31 H 1.09001 * 109.46996 * 119.99756 * 2 1 3 32 32 H 1.08996 * 109.47589 * 60.00316 * 3 2 1 33 33 H 1.09007 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47214 * 299.99622 * 3 2 1 35 35 H 1.08000 * 125.55740 * 359.94573 * 5 4 2 36 36 H 1.07997 * 125.88839 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.47225 * 83.98945 * 14 13 11 38 38 H 1.09006 * 109.46693 * 203.98993 * 14 13 11 39 39 H 1.09000 * 109.47468 * 323.97980 * 14 13 11 40 40 H 1.08994 * 109.47491 * 60.00384 * 17 15 13 41 41 H 1.09006 * 109.46896 * 179.97438 * 17 15 13 42 42 H 1.09004 * 109.47432 * 299.99771 * 17 15 13 43 43 H 0.97003 * 120.00142 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.4320 -0.6688 -2.4255 6 6 2.1687 -1.4207 -3.2754 7 6 3.2661 -1.9431 -2.5634 8 7 4.2221 -2.7340 -3.0528 9 6 4.1923 -3.1008 -4.3328 10 8 3.2923 -2.7145 -5.0559 11 6 5.2616 -3.9863 -4.8802 12 8 6.2140 -4.2859 -4.1899 13 7 5.1699 -4.4532 -6.1412 14 6 4.0622 -4.0285 -7.0007 15 6 6.1778 -5.3853 -6.6523 16 1 6.9166 -5.5833 -5.8756 17 6 5.5011 -6.6962 -7.0578 18 6 6.8596 -4.7799 -7.8521 19 1 6.5706 -3.7989 -8.1995 20 6 7.8522 -5.4781 -8.5064 21 7 8.4468 -4.9499 -9.5538 22 14 8.3515 -7.1751 -7.9060 23 1 7.5238 -8.2039 -8.5853 24 1 9.7847 -7.4083 -8.2171 25 1 8.1431 -7.2620 -6.4383 26 7 3.1717 -1.4832 -1.2733 27 1 3.7881 -1.6731 -0.5488 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5264 -0.1381 -2.6801 36 1 1.9527 -1.5912 -4.3198 37 1 4.3089 -3.0744 -7.4664 38 1 3.8946 -4.7779 -7.7743 39 1 3.1588 -3.9173 -6.4009 40 1 4.7621 -6.4987 -7.8342 41 1 6.2510 -7.3897 -7.4385 42 1 5.0080 -7.1343 -6.1899 43 1 9.1449 -5.4413 -10.0143 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361913605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:52 Heat of formation + Delta-G solvation = 39.386974 kcal Electronic energy + Delta-G solvation = -25353.766085 eV Core-core repulsion = 21630.502719 eV Total energy + Delta-G solvation = -3723.263365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.68536 -41.29315 -39.37469 -37.37781 -36.88318 -34.83065 -34.12770 -32.76772 -32.19957 -30.13138 -28.20466 -27.78304 -27.20487 -26.30657 -23.81487 -23.32123 -22.41476 -21.44058 -19.85628 -18.89086 -18.65056 -18.00553 -17.52178 -17.15287 -16.90325 -16.64247 -16.33767 -16.16461 -15.32713 -15.26441 -14.93891 -14.73103 -14.64695 -14.46715 -14.11094 -13.93528 -13.81585 -13.60366 -13.28142 -13.15082 -13.08626 -12.96967 -12.60195 -12.44394 -12.14741 -12.08528 -12.00311 -11.55961 -11.51897 -11.37095 -10.79684 -10.71022 -10.53392 -9.81575 -9.44690 -8.72230 -8.34732 -6.40419 -0.27915 0.22103 0.93197 1.27049 1.36490 1.47083 1.77544 1.90302 2.29226 2.56523 2.92836 2.99298 3.35974 3.56221 3.72313 3.85277 4.02653 4.16149 4.36560 4.39605 4.44306 4.56923 4.60514 4.66940 4.69561 4.76463 4.82700 4.85231 4.90014 4.98211 5.05371 5.18281 5.22978 5.29052 5.29853 5.46280 5.65417 5.70512 5.87294 6.15093 6.20911 6.41730 6.56244 6.62448 7.08049 7.26617 7.59131 8.81849 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038072 B = 0.002705 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.275096 B =10349.522908 C =10488.942437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 C -0.171 4.171 4 N -0.351 5.351 5 C 0.197 3.803 6 C -0.339 4.339 7 C 0.451 3.549 8 N -0.687 5.687 9 C 0.493 3.507 10 O -0.555 6.555 11 C 0.499 3.501 12 O -0.564 6.564 13 N -0.572 5.572 14 C 0.088 3.912 15 C 0.227 3.773 16 H 0.035 0.965 17 C -0.152 4.152 18 C -0.530 4.530 19 H 0.038 0.962 20 C 0.022 3.978 21 N -0.939 5.939 22 Si 0.946 3.054 23 H -0.247 1.247 24 H -0.290 1.290 25 H -0.262 1.262 26 N -0.461 5.461 27 H 0.458 0.542 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.249 0.751 36 H 0.172 0.828 37 H 0.035 0.965 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 13.831 24.870 37.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 C -0.229 4.229 4 N -0.139 5.139 5 C 0.054 3.946 6 C -0.371 4.371 7 C 0.202 3.798 8 N -0.451 5.451 9 C 0.274 3.726 10 O -0.437 6.437 11 C 0.283 3.717 12 O -0.444 6.444 13 N -0.304 5.304 14 C -0.054 4.054 15 C 0.124 3.876 16 H 0.053 0.947 17 C -0.210 4.210 18 C -0.568 4.568 19 H 0.056 0.944 20 C -0.177 4.177 21 N -0.579 5.579 22 Si 0.772 3.228 23 H -0.172 1.172 24 H -0.218 1.218 25 H -0.186 1.186 26 N -0.184 5.184 27 H 0.308 0.692 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.189 0.811 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.149 13.662 25.495 37.680 hybrid contribution 1.089 -0.567 -0.533 1.338 sum -23.060 13.095 24.962 36.419 Atomic orbital electron populations 1.22290 0.89427 1.04277 1.06110 1.22133 0.97172 0.92825 0.83137 1.22378 1.01520 0.93883 1.05150 1.47800 1.13464 1.40564 1.12104 1.23550 0.97181 0.93048 0.80858 1.22569 0.99676 1.10877 1.03945 1.19368 0.89821 0.86576 0.84081 1.68656 1.31129 1.29286 1.16027 1.20181 0.84515 0.82008 0.85931 1.90457 1.36419 1.54384 1.62431 1.20383 0.87072 0.81981 0.82291 1.90585 1.34469 1.59618 1.59688 1.47924 1.27027 1.44043 1.11407 1.22153 0.89271 0.99014 0.94954 1.19152 0.87282 0.87396 0.93768 0.94722 1.22310 1.00755 0.96564 1.01356 1.21300 1.19934 1.03639 1.11976 0.94376 1.25707 0.95199 1.02311 0.94457 1.70013 1.26309 1.40301 1.21230 0.85900 0.76960 0.80093 0.79845 1.17244 1.21763 1.18630 1.44499 1.19482 1.43825 1.10621 0.69163 0.87292 0.91451 0.89547 0.86622 0.87653 0.93266 0.90930 0.73472 0.81063 0.94613 0.90985 0.87326 0.90955 0.93197 0.92384 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.75 8.84 71.98 0.64 1.39 16 2 C 0.15 -0.09 3.93 44.99 0.18 0.09 16 3 C -0.17 0.12 9.52 71.98 0.69 0.81 16 4 N -0.35 -2.78 3.56 -326.46 -1.16 -3.94 16 5 C 0.20 1.80 10.57 83.33 0.88 2.68 16 6 C -0.34 -7.71 9.52 22.23 0.21 -7.50 16 7 C 0.45 12.93 8.07 133.77 1.08 14.01 16 8 N -0.69 -28.00 10.34 -310.92 -3.21 -31.21 16 9 C 0.49 22.57 7.66 87.45 0.67 23.24 16 10 O -0.56 -23.57 10.05 -4.49 -0.05 -23.61 16 11 C 0.50 26.50 7.73 87.21 0.67 27.17 16 12 O -0.56 -33.36 16.24 -3.34 -0.05 -33.42 16 13 N -0.57 -29.69 2.75 -828.63 -2.28 -31.98 16 14 C 0.09 3.88 8.75 127.77 1.12 5.00 16 15 C 0.23 12.60 2.22 44.24 0.10 12.70 16 16 H 0.03 2.12 5.96 -2.39 -0.01 2.10 16 17 C -0.15 -7.09 8.66 71.98 0.62 -6.47 16 18 C -0.53 -33.29 8.95 25.60 0.23 -33.06 16 19 H 0.04 2.64 7.89 -2.91 -0.02 2.61 16 20 C 0.02 1.36 5.45 84.65 0.46 1.82 16 21 N -0.94 -61.20 13.96 21.45 0.30 -60.90 16 22 Si 0.95 47.98 24.37 68.60 1.67 49.66 16 23 H -0.25 -11.35 6.87 99.48 0.68 -10.66 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.26 -13.20 6.53 99.48 0.65 -12.55 16 26 N -0.46 -7.68 7.37 -54.85 -0.40 -8.09 16 27 H 0.46 5.90 8.96 -213.29 -1.91 3.99 16 28 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 29 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.09 -0.57 7.13 -2.39 -0.02 -0.59 16 31 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H 0.05 0.17 8.14 -2.38 -0.02 0.16 16 34 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.25 -0.54 7.23 -2.91 -0.02 -0.57 16 36 H 0.17 4.78 5.77 -2.91 -0.02 4.76 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.98 6.44 -2.38 -0.02 2.96 16 39 H 0.11 4.41 5.35 -2.54 -0.01 4.39 16 40 H 0.07 3.13 6.67 -2.39 -0.02 3.11 16 41 H 0.05 2.32 3.27 -2.38 -0.01 2.31 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.27 16.32 8.31 -92.71 -0.77 15.55 16 Total: -1.00 -97.02 347.11 1.41 -95.60 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -0.94 Total: 6.01 kcal Atomic # 6 Polarization: 34.33 SS G_CDS: 7.54 Total: 41.87 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -6.76 Total: -136.11 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -0.10 Total: -57.03 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.66 kcal Total: -97.02 1.41 -95.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361913605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.991 kcal (2) G-P(sol) polarization free energy of solvation -97.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds