Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09004 * 109.46978 * 304.99658 * 3 2 1 5 5 C 1.53000 * 109.47317 * 64.99833 * 3 2 1 6 6 N 1.46496 * 109.47072 * 185.00209 * 3 2 1 7 7 N 1.40153 * 125.85903 * 299.99786 * 6 3 2 8 8 H 0.97000 * 126.34070 * 0.02562 * 7 6 3 9 9 C 1.37287 * 107.32333 * 180.02562 * 7 6 3 10 10 N 1.33382 * 126.35311 * 180.02562 * 9 7 6 11 11 C 1.33170 * 119.99606 * 180.02562 * 10 9 7 12 12 O 1.21744 * 120.00201 * 359.97438 * 11 10 9 13 13 C 1.49235 * 119.99560 * 180.02562 * 11 10 9 14 14 O 1.21386 * 120.00137 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00222 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 13 11 17 17 C 1.50702 * 109.46952 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99717 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00075 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46996 * 120.00133 * 21 19 17 24 24 H 1.48502 * 109.47285 * 240.00142 * 21 19 17 25 25 C 1.40858 * 107.28985 * 359.74915 * 9 7 6 26 26 C 1.35297 * 108.22615 * 0.41670 * 25 9 7 27 27 C 1.50703 * 125.55939 * 179.84556 * 26 25 9 28 28 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47189 * 300.00571 * 1 2 3 30 30 H 1.09004 * 109.46897 * 60.00242 * 1 2 3 31 31 H 1.09004 * 109.46612 * 239.99836 * 2 1 3 32 32 H 1.08996 * 109.47127 * 119.99905 * 2 1 3 33 33 H 1.08996 * 109.46904 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46901 * 299.99834 * 5 3 2 35 35 H 1.08996 * 109.46977 * 60.00150 * 5 3 2 36 36 H 0.97008 * 119.99641 * 359.97438 * 15 13 11 37 37 H 1.08993 * 109.46708 * 299.99680 * 16 15 13 38 38 H 1.08998 * 109.47125 * 59.99563 * 16 15 13 39 39 H 0.97002 * 119.99827 * 179.97438 * 20 19 17 40 40 H 1.08003 * 125.88599 * 180.25888 * 25 9 7 41 41 H 1.09002 * 109.47152 * 269.69234 * 27 26 25 42 42 H 1.09001 * 109.46980 * 149.69334 * 27 26 25 43 43 H 1.09004 * 109.47113 * 29.69315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.3985 0.8489 0.7756 8 1 4.1681 0.3634 1.5831 9 6 5.6650 1.0800 0.2987 10 7 6.8065 0.6783 0.8596 11 6 7.9709 0.9749 0.2854 12 8 7.9934 1.6123 -0.7516 13 6 9.2481 0.5250 0.9126 14 8 9.2256 -0.1109 1.9464 15 7 10.4267 0.8256 0.3319 16 6 11.6805 0.3845 0.9480 17 6 12.8429 0.8456 0.1069 18 1 12.6654 1.4112 -0.7958 19 6 14.1329 0.5465 0.4906 20 7 14.3490 -0.1418 1.5903 21 14 15.5737 1.1175 -0.5522 22 1 15.0664 1.8672 -1.7293 23 1 16.4506 2.0017 0.2569 24 1 16.3496 -0.0619 -1.0128 25 6 5.5348 1.8145 -0.8962 26 6 4.2176 2.0251 -1.1221 27 6 3.6383 2.7745 -2.2942 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9991 3.1540 1.3074 34 1 0.5490 2.1253 1.3968 35 1 2.0699 1.5876 2.1491 36 1 10.4446 1.3341 -0.4940 37 1 11.7635 0.8102 1.9478 38 1 11.6896 -0.7035 1.0144 39 1 15.2566 -0.3525 1.8600 40 1 6.3467 2.1534 -1.5226 41 1 3.5416 3.8298 -2.0389 42 1 2.6563 2.3678 -2.5361 43 1 4.2979 2.6681 -3.1555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427896747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = 29.710788 kcal Electronic energy + Delta-G solvation = -24630.239296 eV Core-core repulsion = 20906.556340 eV Total energy + Delta-G solvation = -3723.682956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90361 -39.37746 -37.63669 -36.84666 -34.30812 -33.88313 -32.87581 -32.04419 -31.06608 -28.99715 -28.40607 -27.40857 -25.45524 -24.38947 -22.60201 -21.41056 -21.16194 -20.42486 -19.18612 -17.91709 -17.00196 -16.39185 -16.14838 -15.91369 -15.60931 -15.41714 -14.82133 -14.74137 -14.36846 -14.13271 -13.94395 -13.77938 -13.57719 -13.36004 -13.08044 -12.97617 -12.84694 -12.79382 -12.57466 -12.30719 -11.83322 -11.81136 -11.57701 -11.49109 -10.83628 -10.79160 -10.64619 -10.53946 -10.15764 -9.63952 -9.23639 -9.06746 -8.59783 -8.39997 -7.72026 -7.62196 -6.03608 -4.09191 0.76794 0.97502 2.12242 3.11184 3.28740 3.34007 3.40383 3.45307 3.77450 3.91723 3.97476 4.07728 4.17496 4.46277 4.49014 4.52508 4.59385 4.60789 4.75999 4.84762 4.94253 5.01490 5.16308 5.18389 5.26406 5.28506 5.32366 5.35625 5.39311 5.52595 5.54455 5.88984 5.98660 6.57128 6.85462 7.17977 7.43352 7.59722 7.66365 7.68231 7.83173 8.10120 8.65306 8.87097 9.05008 9.29669 9.56695 11.06820 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.002307 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.941033 B =12131.536850 C =12671.506695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.143 4.143 3 C 0.157 3.843 4 H 0.119 0.881 5 C -0.173 4.173 6 N -0.379 5.379 7 N -0.472 5.472 8 H 0.448 0.552 9 C 0.482 3.518 10 N -0.645 5.645 11 C 0.496 3.504 12 O -0.555 6.555 13 C 0.505 3.495 14 O -0.523 6.523 15 N -0.689 5.689 16 C 0.248 3.752 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.062 3.938 20 N -0.887 5.887 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.299 4.299 26 C 0.171 3.829 27 C -0.098 4.098 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.264 0.736 40 H 0.193 0.807 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.165 5.672 -6.943 36.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.056 3.944 4 H 0.136 0.864 5 C -0.231 4.231 6 N -0.170 5.170 7 N -0.199 5.199 8 H 0.296 0.704 9 C 0.229 3.771 10 N -0.405 5.405 11 C 0.278 3.722 12 O -0.434 6.434 13 C 0.285 3.715 14 O -0.400 6.400 15 N -0.340 5.340 16 C 0.128 3.872 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.141 4.141 20 N -0.525 5.525 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.330 4.330 26 C 0.052 3.948 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.210 0.790 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -35.124 4.964 -5.791 35.943 hybrid contribution 0.768 0.478 -0.838 1.233 sum -34.356 5.442 -6.629 35.411 Atomic orbital electron populations 1.21791 0.93754 1.02938 1.02436 1.22021 0.97357 0.94885 1.03839 1.21681 0.73092 0.98385 1.01233 0.86352 1.22318 1.03049 1.01614 0.96120 1.46709 1.02082 1.50198 1.18057 1.44202 0.99863 1.53419 1.22389 0.70406 1.19320 0.84870 0.85478 0.87443 1.68967 0.95043 1.38210 1.38233 1.21114 0.89199 0.78735 0.83130 1.90562 1.89748 1.38211 1.24855 1.19538 0.84383 0.82079 0.85538 1.90664 1.87203 1.39049 1.23087 1.46345 1.06210 1.54117 1.27361 1.19200 0.77990 0.95948 0.94097 1.21300 0.90688 1.36203 1.09500 0.91632 1.24955 0.98966 0.94939 0.95289 1.69997 1.21317 1.38313 1.22856 0.86338 0.81894 0.78405 0.80149 1.19562 1.20880 1.20870 1.22674 0.95932 1.11916 1.02478 1.21371 0.91918 0.92509 0.88985 1.20703 1.01729 0.99631 0.93599 0.91673 0.91906 0.92114 0.90552 0.91077 0.91192 0.89707 0.91704 0.76654 0.95186 0.95188 0.92611 0.79032 0.89007 0.90646 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.24 9.67 37.16 0.36 0.12 16 2 C -0.14 -0.43 5.66 -26.73 -0.15 -0.58 16 3 C 0.16 0.49 3.11 -67.93 -0.21 0.28 16 4 H 0.12 0.12 6.62 -51.93 -0.34 -0.22 16 5 C -0.17 -0.47 9.20 37.16 0.34 -0.13 16 6 N -0.38 -2.63 3.31 -50.40 -0.17 -2.80 16 7 N -0.47 -4.75 7.21 31.31 0.23 -4.52 16 8 H 0.45 3.64 8.96 -182.56 -1.64 2.00 16 9 C 0.48 7.33 8.07 -155.16 -1.25 6.07 16 10 N -0.65 -12.97 10.33 -11.99 -0.12 -13.09 16 11 C 0.50 11.11 7.77 -12.40 -0.10 11.02 16 12 O -0.55 -11.95 13.39 5.15 0.07 -11.88 16 13 C 0.51 12.87 7.88 -11.68 -0.09 12.78 16 14 O -0.52 -14.82 16.91 5.47 0.09 -14.72 16 15 N -0.69 -17.63 5.54 -61.98 -0.34 -17.97 16 16 C 0.25 7.24 5.43 -5.19 -0.03 7.21 16 17 C -0.54 -15.78 9.28 -34.44 -0.32 -16.10 16 18 H 0.07 1.83 7.60 -52.49 -0.40 1.43 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 21 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.30 -3.92 9.41 -39.64 -0.37 -4.29 16 26 C 0.17 1.39 6.93 -81.69 -0.57 0.82 16 27 C -0.10 -0.36 9.92 36.01 0.36 0.00 16 28 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.07 6.56 -51.93 -0.34 -0.27 16 30 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.09 6.57 -51.93 -0.34 -0.26 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.40 9.44 7.79 -40.82 -0.32 9.12 16 37 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.19 2.89 5.77 -52.48 -0.30 2.59 16 41 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 0.10 7.05 -51.93 -0.37 -0.27 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -39.57 365.28 -8.57 -48.13 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.41 Total: 2.06 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: -2.13 Total: 18.91 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 0.33 Total: -64.99 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.16 Total: -26.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -39.57 -8.57 -48.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427896747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.842 kcal (2) G-P(sol) polarization free energy of solvation -39.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds