Wall clock time and date at job start Fri Apr 10 2020 17:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47258 * 2 1 4 4 H 1.09004 * 109.46978 * 304.99658 * 3 2 1 5 5 C 1.53000 * 109.47317 * 64.99833 * 3 2 1 6 6 N 1.46496 * 109.47072 * 185.00209 * 3 2 1 7 7 N 1.40153 * 125.85903 * 299.99786 * 6 3 2 8 8 H 0.97000 * 126.34070 * 0.02562 * 7 6 3 9 9 C 1.37287 * 107.32333 * 180.02562 * 7 6 3 10 10 N 1.33382 * 126.35311 * 180.02562 * 9 7 6 11 11 C 1.33170 * 119.99606 * 180.02562 * 10 9 7 12 12 O 1.21744 * 120.00201 * 359.97438 * 11 10 9 13 13 C 1.49235 * 119.99560 * 180.02562 * 11 10 9 14 14 O 1.21386 * 120.00137 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00222 * 180.02562 * 13 11 10 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 13 11 17 17 C 1.50702 * 109.46952 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99717 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00075 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47324 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46996 * 120.00133 * 21 19 17 24 24 H 1.48502 * 109.47285 * 240.00142 * 21 19 17 25 25 C 1.40858 * 107.28985 * 359.74915 * 9 7 6 26 26 C 1.35297 * 108.22615 * 0.41670 * 25 9 7 27 27 C 1.50703 * 125.55939 * 179.84556 * 26 25 9 28 28 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47189 * 300.00571 * 1 2 3 30 30 H 1.09004 * 109.46897 * 60.00242 * 1 2 3 31 31 H 1.09004 * 109.46612 * 239.99836 * 2 1 3 32 32 H 1.08996 * 109.47127 * 119.99905 * 2 1 3 33 33 H 1.08996 * 109.46904 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.46901 * 299.99834 * 5 3 2 35 35 H 1.08996 * 109.46977 * 60.00150 * 5 3 2 36 36 H 0.97008 * 119.99641 * 359.97438 * 15 13 11 37 37 H 1.08993 * 109.46708 * 299.99680 * 16 15 13 38 38 H 1.08998 * 109.47125 * 59.99563 * 16 15 13 39 39 H 0.97002 * 119.99827 * 179.97438 * 20 19 17 40 40 H 1.08003 * 125.88599 * 180.25888 * 25 9 7 41 41 H 1.09002 * 109.47152 * 269.69234 * 27 26 25 42 42 H 1.09001 * 109.46980 * 149.69334 * 27 26 25 43 43 H 1.09004 * 109.47113 * 29.69315 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 7 3.5001 1.4442 -0.1204 7 7 4.3985 0.8489 0.7756 8 1 4.1681 0.3634 1.5831 9 6 5.6650 1.0800 0.2987 10 7 6.8065 0.6783 0.8596 11 6 7.9709 0.9749 0.2854 12 8 7.9934 1.6123 -0.7516 13 6 9.2481 0.5250 0.9126 14 8 9.2256 -0.1109 1.9464 15 7 10.4267 0.8256 0.3319 16 6 11.6805 0.3845 0.9480 17 6 12.8429 0.8456 0.1069 18 1 12.6654 1.4112 -0.7958 19 6 14.1329 0.5465 0.4906 20 7 14.3490 -0.1418 1.5903 21 14 15.5737 1.1175 -0.5522 22 1 15.0664 1.8672 -1.7293 23 1 16.4506 2.0017 0.2569 24 1 16.3496 -0.0619 -1.0128 25 6 5.5348 1.8145 -0.8962 26 6 4.2176 2.0251 -1.1221 27 6 3.6383 2.7745 -2.2942 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9991 3.1540 1.3074 34 1 0.5490 2.1253 1.3968 35 1 2.0699 1.5876 2.1491 36 1 10.4446 1.3341 -0.4940 37 1 11.7635 0.8102 1.9478 38 1 11.6896 -0.7035 1.0144 39 1 15.2566 -0.3525 1.8600 40 1 6.3467 2.1534 -1.5226 41 1 3.5416 3.8298 -2.0389 42 1 2.6563 2.3678 -2.5361 43 1 4.2979 2.6681 -3.1555 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427896747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:11 Heat of formation + Delta-G solvation = -2.217474 kcal Electronic energy + Delta-G solvation = -24631.623810 eV Core-core repulsion = 20906.556340 eV Total energy + Delta-G solvation = -3725.067469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83088 -41.07073 -39.31072 -37.49806 -36.26894 -35.08095 -34.33409 -33.73396 -31.70202 -29.81855 -29.42351 -28.97886 -26.61062 -25.38660 -24.33827 -22.61581 -21.97011 -21.22728 -20.94253 -19.16539 -18.54227 -17.80682 -17.61373 -17.01852 -16.84490 -16.51816 -16.37718 -16.14828 -15.87054 -15.10085 -14.96901 -14.65036 -14.62268 -14.42155 -14.05215 -13.92309 -13.83690 -13.61126 -13.42887 -13.14683 -12.92976 -12.80426 -12.73400 -12.71681 -12.33111 -12.17170 -12.13940 -11.78793 -11.47932 -11.37028 -10.82415 -10.60403 -10.52579 -10.10701 -9.93477 -8.79250 -8.29181 -6.46351 -0.34173 0.16373 0.84270 1.42964 1.45645 1.59732 1.72456 1.94413 2.38234 2.54321 2.90541 3.04903 3.37963 3.48497 3.60297 3.67725 3.90491 3.99152 4.19226 4.33862 4.38117 4.51842 4.56376 4.64826 4.74137 4.80669 4.84375 4.99541 5.01642 5.04242 5.08659 5.17404 5.18867 5.21850 5.40994 5.41230 5.60627 5.65301 5.80151 5.84153 6.13699 6.34528 6.60427 6.72084 7.14896 7.29659 7.54035 8.83560 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.002307 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.941033 B =12131.536850 C =12671.506695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.141 4.141 3 C 0.147 3.853 4 H 0.160 0.840 5 C -0.173 4.173 6 N -0.347 5.347 7 N -0.457 5.457 8 H 0.457 0.543 9 C 0.454 3.546 10 N -0.684 5.684 11 C 0.492 3.508 12 O -0.569 6.569 13 C 0.501 3.499 14 O -0.562 6.562 15 N -0.685 5.685 16 C 0.265 3.735 17 C -0.559 4.559 18 H 0.080 0.920 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.992 3.008 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.343 4.343 26 C 0.216 3.784 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.409 0.591 37 H -0.004 1.004 38 H -0.004 1.004 39 H 0.271 0.729 40 H 0.169 0.831 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.916 7.547 -9.447 40.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.049 3.951 4 H 0.177 0.823 5 C -0.231 4.231 6 N -0.136 5.136 7 N -0.180 5.180 8 H 0.307 0.693 9 C 0.205 3.795 10 N -0.449 5.449 11 C 0.272 3.728 12 O -0.451 6.451 13 C 0.282 3.718 14 O -0.441 6.441 15 N -0.337 5.337 16 C 0.143 3.857 17 C -0.597 4.597 18 H 0.098 0.902 19 C -0.196 4.196 20 N -0.567 5.567 21 Si 0.814 3.186 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.374 4.374 26 C 0.091 3.909 27 C -0.158 4.158 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.014 0.986 38 H 0.014 0.986 39 H 0.080 0.920 40 H 0.187 0.813 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -39.046 6.831 -8.271 40.493 hybrid contribution 1.410 -0.090 -0.051 1.414 sum -37.636 6.741 -8.321 39.130 Atomic orbital electron populations 1.21784 0.92080 1.03080 1.03657 1.22004 0.98700 0.94216 1.03041 1.22342 0.69883 0.99392 1.03459 0.82255 1.22351 1.04740 1.00999 0.95013 1.47568 1.03282 1.46641 1.16099 1.44289 0.99318 1.51829 1.22587 0.69319 1.19313 0.84972 0.86509 0.88661 1.68653 0.95756 1.40812 1.39665 1.20269 0.88695 0.80220 0.83595 1.90546 1.89522 1.39877 1.25123 1.20375 0.85649 0.80838 0.84934 1.90605 1.88030 1.40693 1.24814 1.46139 1.05530 1.54345 1.27649 1.18745 0.80165 0.93652 0.93167 1.21602 0.91024 1.36991 1.10092 0.90188 1.26115 1.02364 0.94482 0.96609 1.70148 1.22581 1.39173 1.24778 0.85017 0.77117 0.78154 0.78328 1.18004 1.19980 1.19969 1.22349 0.97899 1.14612 1.02530 1.22043 0.90306 0.89457 0.89074 1.21040 1.03347 1.00290 0.91139 0.92215 0.91032 0.90523 0.91287 0.92159 0.91465 0.87079 0.92850 0.75467 0.98584 0.98593 0.92033 0.81341 0.86565 0.86805 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.14 9.67 71.98 0.70 0.84 16 2 C -0.14 -0.34 5.66 30.60 0.17 -0.17 16 3 C 0.15 0.23 3.11 44.99 0.14 0.37 16 4 H 0.16 -0.83 6.62 -2.38 -0.02 -0.85 16 5 C -0.17 -0.22 9.20 71.98 0.66 0.44 16 6 N -0.35 -3.71 3.31 -313.37 -1.04 -4.75 16 7 N -0.46 -8.78 7.21 -54.85 -0.40 -9.17 16 8 H 0.46 7.15 8.96 -213.29 -1.91 5.24 16 9 C 0.45 14.24 8.07 133.77 1.08 15.32 16 10 N -0.68 -29.42 10.33 -310.94 -3.21 -32.63 16 11 C 0.49 23.71 7.77 87.45 0.68 24.39 16 12 O -0.57 -26.20 13.39 -4.49 -0.06 -26.26 16 13 C 0.50 27.56 7.88 87.20 0.69 28.25 16 14 O -0.56 -34.48 16.91 -3.36 -0.06 -34.53 16 15 N -0.69 -37.56 5.54 -468.35 -2.60 -40.15 16 16 C 0.26 16.53 5.43 85.63 0.46 17.00 16 17 C -0.56 -33.87 9.28 25.60 0.24 -33.63 16 18 H 0.08 4.51 7.60 -2.91 -0.02 4.49 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -59.04 13.29 21.45 0.28 -58.76 16 21 Si 0.99 45.45 29.54 68.60 2.03 47.47 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.34 -8.99 9.41 22.23 0.21 -8.78 16 26 C 0.22 2.84 6.93 41.20 0.29 3.13 16 27 C -0.10 -0.20 9.92 71.24 0.71 0.50 16 28 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.07 -0.17 6.56 -2.39 -0.02 -0.18 16 30 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.11 -0.35 6.57 -2.38 -0.02 -0.36 16 35 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.41 20.51 7.79 -92.70 -0.72 19.79 16 37 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 40 H 0.17 5.33 5.77 -2.91 -0.02 5.32 16 41 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.11 -0.54 7.05 -2.39 -0.02 -0.56 16 43 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -95.24 365.28 -0.14 -95.39 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -1.58 Total: 15.04 kcal Atomic # 6 Polarization: 41.87 SS G_CDS: 6.48 Total: 48.35 kcal Atomic # 7 Polarization: -138.50 SS G_CDS: -6.96 Total: -145.46 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.12 Total: -60.80 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -95.24 -0.14 -95.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427896747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.169 kcal (2) G-P(sol) polarization free energy of solvation -95.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds