Wall clock time and date at job start Fri Apr 10 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47449 * 2 1 4 4 C 1.52994 * 109.47266 * 120.00796 * 2 1 3 5 5 N 1.46501 * 109.46933 * 304.99463 * 4 2 1 6 6 C 1.34779 * 120.00032 * 180.02562 * 5 4 2 7 7 O 1.21840 * 120.00106 * 0.02562 * 6 5 4 8 8 N 1.33828 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.32938 * 120.00285 * 180.02562 * 8 6 5 10 10 C 1.41205 * 126.37378 * 0.02562 * 9 8 6 11 11 C 1.34964 * 108.24132 * 179.97438 * 10 9 8 12 12 N 1.36453 * 108.94829 * 0.02562 * 11 10 9 13 13 C 1.46495 * 125.85252 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47426 * 85.02220 * 13 12 11 15 15 H 1.08001 * 119.99569 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46928 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46952 * 120.00219 * 18 16 14 21 21 H 1.48499 * 109.47144 * 239.99958 * 18 16 14 22 22 N 1.37418 * 126.38338 * 180.02562 * 9 8 6 23 23 H 0.97004 * 126.35846 * 359.97438 * 22 9 8 24 24 C 1.53005 * 109.46668 * 240.00533 * 2 1 3 25 25 C 1.52995 * 117.49756 * 128.62214 * 24 2 1 26 26 C 1.52996 * 117.49918 * 59.99776 * 24 2 1 27 27 H 1.09005 * 109.46747 * 299.99597 * 1 2 3 28 28 H 1.09003 * 109.47222 * 59.98958 * 1 2 3 29 29 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 30 30 H 0.96698 * 114.00354 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47334 * 184.99916 * 4 2 1 32 32 H 1.09001 * 109.47756 * 64.99478 * 4 2 1 33 33 H 0.96995 * 119.99995 * 0.02562 * 5 4 2 34 34 H 1.08002 * 125.88050 * 359.96219 * 10 9 8 35 35 H 1.07999 * 125.52317 * 179.74257 * 11 10 9 36 36 H 1.08997 * 109.46982 * 205.02317 * 13 12 11 37 37 H 1.09004 * 109.47194 * 325.01878 * 13 12 11 38 38 H 0.97007 * 120.00218 * 179.97438 * 17 16 14 39 39 H 1.08996 * 115.54994 * 274.33073 * 24 2 1 40 40 H 1.08998 * 117.50232 * 359.97438 * 25 24 2 41 41 H 1.09007 * 117.49637 * 145.01995 * 25 24 2 42 42 H 1.08997 * 117.50093 * 214.98092 * 26 24 2 43 43 H 1.09002 * 117.50092 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.4560 -0.1038 2.4423 6 6 1.7649 -0.5771 3.6659 7 8 2.5303 -1.5183 3.7796 8 7 1.2318 -0.0127 4.7559 9 6 1.5369 -0.4791 5.9628 10 6 2.4031 -1.5567 6.2497 11 6 2.4489 -1.7168 7.5891 12 7 1.6443 -0.7833 8.1747 13 6 1.4209 -0.6244 9.6138 14 6 2.5129 0.2329 10.2001 15 1 3.2948 0.6210 9.5642 16 6 2.5130 0.5227 11.5481 17 7 1.5606 0.0505 12.3222 18 14 3.8669 1.5848 12.2749 19 1 4.8110 1.9866 11.2014 20 1 3.2691 2.7982 12.8874 21 1 4.5966 0.8143 13.3137 22 7 1.0681 -0.0025 7.1634 23 1 0.4531 0.7373 7.2878 24 6 2.0399 -0.7212 -1.2494 25 6 3.0740 0.0053 -2.1118 26 6 1.6355 -0.1493 -2.6096 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1264 -0.6445 1.2950 32 1 1.7517 -1.7717 1.2054 33 1 0.8470 0.6456 2.3518 34 1 2.9370 -2.1507 5.5226 35 1 3.0251 -2.4657 8.1122 36 1 0.4552 -0.1475 9.7811 37 1 1.4306 -1.6033 10.0932 38 1 1.5609 0.2540 13.2707 39 1 2.1266 -1.8044 -1.1645 40 1 3.3908 0.9971 -1.7894 41 1 3.8414 -0.6001 -2.5943 42 1 1.4566 -0.8563 -3.4197 43 1 1.0066 0.7409 -2.6145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438325389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:22 Heat of formation + Delta-G solvation = 46.508131 kcal Electronic energy + Delta-G solvation = -24595.060360 eV Core-core repulsion = 20872.105791 eV Total energy + Delta-G solvation = -3722.954569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74093 -39.82619 -38.48263 -35.56044 -34.46078 -33.80611 -32.87139 -31.11517 -30.99449 -30.35253 -27.16271 -26.32337 -23.65297 -22.84540 -22.57633 -21.43453 -21.12481 -20.28251 -19.57227 -17.64237 -17.17929 -16.93862 -16.36784 -15.69727 -15.48061 -15.21043 -14.92754 -14.65645 -14.33859 -14.12841 -13.86669 -13.70803 -13.15456 -12.88662 -12.71507 -12.64830 -12.53074 -12.38433 -12.01037 -11.94305 -11.64431 -11.31832 -11.20907 -11.07384 -10.81164 -10.52696 -10.38434 -10.34976 -10.08406 -9.67103 -9.53521 -8.99186 -8.91275 -8.54196 -8.32001 -6.85685 -6.46526 -4.63899 1.82900 2.12345 3.05427 3.14816 3.18420 3.21561 3.40774 3.60805 4.05279 4.08709 4.35163 4.51788 4.54861 4.61223 4.70001 4.82531 4.83515 5.02700 5.09781 5.30462 5.34621 5.51032 5.57472 5.63917 5.70625 5.82516 5.84399 5.87329 5.89514 6.02653 6.06952 6.28088 6.56032 6.58573 6.76359 7.10654 7.39188 7.42195 7.45425 7.53439 7.66916 7.90426 8.34177 8.46450 8.50975 9.06675 9.66800 10.53965 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.002194 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.035097 B =12760.166886 C =12955.871892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.151 3.849 3 O -0.554 6.554 4 C 0.121 3.879 5 N -0.725 5.725 6 C 0.684 3.316 7 O -0.635 6.635 8 N -0.713 5.713 9 C 0.486 3.514 10 C -0.334 4.334 11 C 0.161 3.839 12 N -0.346 5.346 13 C 0.255 3.745 14 C -0.556 4.556 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.887 5.887 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.278 1.278 22 N -0.472 5.472 23 H 0.444 0.556 24 C -0.182 4.182 25 C -0.178 4.178 26 C -0.167 4.167 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.376 0.624 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.271 0.729 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -1.642 -20.326 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.110 3.890 3 O -0.361 6.361 4 C -0.005 4.005 5 N -0.380 5.380 6 C 0.383 3.617 7 O -0.518 6.518 8 N -0.477 5.477 9 C 0.233 3.767 10 C -0.367 4.367 11 C 0.016 3.984 12 N -0.132 5.132 13 C 0.138 3.862 14 C -0.595 4.595 15 H 0.088 0.912 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.736 3.264 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.204 1.204 22 N -0.195 5.195 23 H 0.291 0.709 24 C -0.201 4.201 25 C -0.215 4.215 26 C -0.204 4.204 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.225 0.775 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.199 0.801 35 H 0.203 0.797 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.562 -1.420 -19.895 20.007 hybrid contribution 1.188 0.577 0.639 1.467 sum -0.373 -0.844 -19.256 19.278 Atomic orbital electron populations 1.21709 0.91912 1.02708 1.02912 1.20904 0.95154 0.81774 0.91164 1.86557 1.26959 1.25758 1.96782 1.21628 0.98016 0.97085 0.83738 1.44608 1.51860 1.37998 1.03553 1.16621 0.80118 0.81384 0.83558 1.90722 1.41486 1.32478 1.87073 1.68044 1.43449 1.41457 0.94790 1.18707 0.85957 0.86985 0.85072 1.22387 1.12255 1.06977 0.95073 1.22796 0.90479 0.91100 0.94010 1.47957 1.38453 1.24150 1.02670 1.20032 0.99085 1.00147 0.66894 1.21467 1.10829 1.33227 0.93940 0.91174 1.24961 0.96428 0.95673 0.96534 1.69907 1.32331 1.43892 1.06245 0.86245 0.81176 0.79836 0.79172 1.19394 1.20541 1.20415 1.44436 1.44445 1.31416 0.99167 0.70911 1.22984 1.05028 0.99966 0.92159 1.22980 0.92679 1.02208 1.03605 1.22885 0.98049 1.03189 0.96271 0.91422 0.91772 0.90914 0.77482 0.92026 0.91468 0.76535 0.80051 0.79684 0.93120 0.91441 0.91928 0.86962 0.88214 0.88763 0.88925 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.46 37.16 0.31 -0.97 16 2 C 0.15 1.48 0.88 -90.62 -0.08 1.40 16 3 O -0.55 -5.66 12.08 -35.23 -0.43 -6.08 16 4 C 0.12 1.54 4.80 -4.04 -0.02 1.52 16 5 N -0.72 -11.38 5.19 -65.43 -0.34 -11.72 16 6 C 0.68 13.71 8.47 -87.76 -0.74 12.97 16 7 O -0.63 -14.03 13.26 5.06 0.07 -13.96 16 8 N -0.71 -14.48 10.59 -15.79 -0.17 -14.65 16 9 C 0.49 9.70 8.07 -155.29 -1.25 8.44 16 10 C -0.33 -6.39 9.52 -39.62 -0.38 -6.77 16 11 C 0.16 2.78 11.45 -16.66 -0.19 2.59 16 12 N -0.35 -6.53 3.63 -62.24 -0.23 -6.76 16 13 C 0.25 5.36 6.19 -5.19 -0.03 5.33 16 14 C -0.56 -13.34 9.39 -34.44 -0.32 -13.67 16 15 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -22.64 13.29 55.43 0.74 -21.90 16 18 Si 0.91 19.40 29.54 -169.99 -5.02 14.38 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 22 N -0.47 -8.62 7.38 31.33 0.23 -8.39 16 23 H 0.44 7.17 8.96 -182.55 -1.64 5.54 16 24 C -0.18 -1.48 5.15 -90.62 -0.47 -1.95 16 25 C -0.18 -1.26 9.73 -26.73 -0.26 -1.52 16 26 C -0.17 -1.21 9.67 -26.73 -0.26 -1.47 16 27 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 28 H 0.06 0.56 7.29 -51.93 -0.38 0.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.38 2.98 7.56 45.56 0.34 3.33 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.40 5.89 7.09 -40.82 -0.29 5.60 16 34 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 35 H 0.19 2.53 8.06 -52.49 -0.42 2.10 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 39 H 0.11 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.10 0.67 6.38 -51.93 -0.33 0.34 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.76 7.61 -51.93 -0.40 0.36 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -30.14 360.05 -10.19 -40.32 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -6.68 Total: 15.83 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -3.79 Total: 7.49 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: 0.23 Total: -63.41 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.36 Total: -20.04 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.14 -10.19 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438325389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.833 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds