Wall clock time and date at job start Fri Apr 10 2020 17:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47449 * 2 1 4 4 C 1.52994 * 109.47266 * 120.00796 * 2 1 3 5 5 N 1.46501 * 109.46933 * 304.99463 * 4 2 1 6 6 C 1.34779 * 120.00032 * 180.02562 * 5 4 2 7 7 O 1.21840 * 120.00106 * 0.02562 * 6 5 4 8 8 N 1.33828 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.32938 * 120.00285 * 180.02562 * 8 6 5 10 10 C 1.41205 * 126.37378 * 0.02562 * 9 8 6 11 11 C 1.34964 * 108.24132 * 179.97438 * 10 9 8 12 12 N 1.36453 * 108.94829 * 0.02562 * 11 10 9 13 13 C 1.46495 * 125.85252 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47426 * 85.02220 * 13 12 11 15 15 H 1.08001 * 119.99569 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46928 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46952 * 120.00219 * 18 16 14 21 21 H 1.48499 * 109.47144 * 239.99958 * 18 16 14 22 22 N 1.37418 * 126.38338 * 180.02562 * 9 8 6 23 23 H 0.97004 * 126.35846 * 359.97438 * 22 9 8 24 24 C 1.53005 * 109.46668 * 240.00533 * 2 1 3 25 25 C 1.52995 * 117.49756 * 128.62214 * 24 2 1 26 26 C 1.52996 * 117.49918 * 59.99776 * 24 2 1 27 27 H 1.09005 * 109.46747 * 299.99597 * 1 2 3 28 28 H 1.09003 * 109.47222 * 59.98958 * 1 2 3 29 29 H 1.08997 * 109.47228 * 180.02562 * 1 2 3 30 30 H 0.96698 * 114.00354 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47334 * 184.99916 * 4 2 1 32 32 H 1.09001 * 109.47756 * 64.99478 * 4 2 1 33 33 H 0.96995 * 119.99995 * 0.02562 * 5 4 2 34 34 H 1.08002 * 125.88050 * 359.96219 * 10 9 8 35 35 H 1.07999 * 125.52317 * 179.74257 * 11 10 9 36 36 H 1.08997 * 109.46982 * 205.02317 * 13 12 11 37 37 H 1.09004 * 109.47194 * 325.01878 * 13 12 11 38 38 H 0.97007 * 120.00218 * 179.97438 * 17 16 14 39 39 H 1.08996 * 115.54994 * 274.33073 * 24 2 1 40 40 H 1.08998 * 117.50232 * 359.97438 * 25 24 2 41 41 H 1.09007 * 117.49637 * 145.01995 * 25 24 2 42 42 H 1.08997 * 117.50093 * 214.98092 * 26 24 2 43 43 H 1.09002 * 117.50092 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.4560 -0.1038 2.4423 6 6 1.7649 -0.5771 3.6659 7 8 2.5303 -1.5183 3.7796 8 7 1.2318 -0.0127 4.7559 9 6 1.5369 -0.4791 5.9628 10 6 2.4031 -1.5567 6.2497 11 6 2.4489 -1.7168 7.5891 12 7 1.6443 -0.7833 8.1747 13 6 1.4209 -0.6244 9.6138 14 6 2.5129 0.2329 10.2001 15 1 3.2948 0.6210 9.5642 16 6 2.5130 0.5227 11.5481 17 7 1.5606 0.0505 12.3222 18 14 3.8669 1.5848 12.2749 19 1 4.8110 1.9866 11.2014 20 1 3.2691 2.7982 12.8874 21 1 4.5966 0.8143 13.3137 22 7 1.0681 -0.0025 7.1634 23 1 0.4531 0.7373 7.2878 24 6 2.0399 -0.7212 -1.2494 25 6 3.0740 0.0053 -2.1118 26 6 1.6355 -0.1493 -2.6096 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 2.9704 1.4236 -0.0004 31 1 3.1264 -0.6445 1.2950 32 1 1.7517 -1.7717 1.2054 33 1 0.8470 0.6456 2.3518 34 1 2.9370 -2.1507 5.5226 35 1 3.0251 -2.4657 8.1122 36 1 0.4552 -0.1475 9.7811 37 1 1.4306 -1.6033 10.0932 38 1 1.5609 0.2540 13.2707 39 1 2.1266 -1.8044 -1.1645 40 1 3.3908 0.9971 -1.7894 41 1 3.8414 -0.6001 -2.5943 42 1 1.4566 -0.8563 -3.4197 43 1 1.0066 0.7409 -2.6145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438325389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:22 Heat of formation + Delta-G solvation = 25.240502 kcal Electronic energy + Delta-G solvation = -24595.982593 eV Core-core repulsion = 20872.105791 eV Total energy + Delta-G solvation = -3723.876802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.24361 -40.79617 -39.76355 -36.43387 -35.90906 -35.12881 -34.53258 -32.48637 -32.42338 -31.61905 -28.58335 -27.59571 -25.07418 -24.08906 -23.13274 -22.81411 -22.54839 -21.31139 -20.74690 -19.10108 -18.71736 -17.98044 -17.71844 -16.96178 -16.67477 -16.54762 -16.46073 -15.97251 -15.69997 -15.30694 -15.06029 -14.84400 -14.52586 -14.32223 -14.18381 -13.65296 -13.62565 -13.51926 -13.28519 -13.06728 -12.84850 -12.75216 -12.32865 -12.24860 -12.03694 -11.95210 -11.42599 -11.26940 -11.19666 -11.02949 -10.80800 -10.76816 -10.48814 -9.90563 -9.89386 -8.53635 -8.19038 -6.54867 0.33485 0.62648 1.37372 1.42729 1.52359 1.69888 2.28897 2.35062 2.84875 2.94068 3.03702 3.15694 3.31395 3.61154 3.79454 3.94686 3.95696 4.14155 4.25750 4.33767 4.40497 4.49010 4.63192 4.72795 4.80968 4.85147 4.88035 4.89143 4.94722 5.00617 5.09268 5.24234 5.27765 5.30356 5.31505 5.52729 5.72012 5.76239 5.98434 6.15568 6.37484 6.61386 6.73378 6.92633 7.02385 7.18967 8.14862 8.67334 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.002194 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.035097 B =12760.166886 C =12955.871892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 O -0.563 6.563 4 C 0.121 3.879 5 N -0.713 5.713 6 C 0.671 3.329 7 O -0.662 6.662 8 N -0.724 5.724 9 C 0.471 3.529 10 C -0.347 4.347 11 C 0.177 3.823 12 N -0.350 5.350 13 C 0.268 3.732 14 C -0.564 4.564 15 H 0.059 0.941 16 C 0.029 3.971 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.273 1.273 22 N -0.467 5.467 23 H 0.451 0.549 24 C -0.191 4.191 25 C -0.175 4.175 26 C -0.161 4.161 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.386 0.614 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.172 0.828 35 H 0.223 0.777 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.274 0.726 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 -1.550 -21.053 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.121 3.879 3 O -0.372 6.372 4 C -0.004 4.004 5 N -0.367 5.367 6 C 0.369 3.631 7 O -0.547 6.547 8 N -0.489 5.489 9 C 0.217 3.783 10 C -0.379 4.379 11 C 0.033 3.967 12 N -0.136 5.136 13 C 0.151 3.849 14 C -0.602 4.602 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.551 5.551 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.198 1.198 22 N -0.191 5.191 23 H 0.300 0.700 24 C -0.210 4.210 25 C -0.211 4.211 26 C -0.198 4.198 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.236 0.764 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.240 0.760 34 H 0.189 0.811 35 H 0.240 0.760 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.099 -1.309 -20.657 20.727 hybrid contribution 1.037 0.550 0.820 1.432 sum -0.062 -0.759 -19.836 19.851 Atomic orbital electron populations 1.21732 0.91699 1.03104 1.02796 1.20776 0.95238 0.81489 0.90413 1.86540 1.27984 1.25898 1.96737 1.21804 0.97576 0.97167 0.83879 1.44606 1.51284 1.37674 1.03155 1.16955 0.80141 0.81395 0.84587 1.90696 1.42724 1.33655 1.87605 1.68099 1.43837 1.41803 0.95135 1.18929 0.86450 0.87549 0.85346 1.22287 1.12737 1.07163 0.95736 1.23336 0.89265 0.90657 0.93435 1.47838 1.38903 1.24589 1.02282 1.19735 0.97777 0.99695 0.67743 1.21644 1.11132 1.33417 0.94030 0.92312 1.25601 0.98085 0.96655 0.96989 1.69967 1.33577 1.44977 1.06564 0.85401 0.78897 0.78449 0.78312 1.19804 1.20459 1.19849 1.44413 1.44459 1.31568 0.98635 0.70030 1.22888 1.06343 1.00019 0.91726 1.23079 0.92865 1.02330 1.02869 1.22933 0.98037 1.03101 0.95762 0.92617 0.90746 0.90317 0.76413 0.92699 0.91931 0.75960 0.81051 0.76016 0.93863 0.91023 0.91721 0.86661 0.87924 0.87771 0.87679 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.46 71.98 0.61 -1.85 16 2 C 0.16 3.02 0.88 -10.79 -0.01 3.01 16 3 O -0.56 -10.91 12.08 -148.98 -1.80 -12.71 16 4 C 0.12 3.05 4.80 86.38 0.41 3.46 16 5 N -0.71 -22.41 5.19 -479.06 -2.49 -24.90 16 6 C 0.67 27.12 8.47 179.35 1.52 28.64 16 7 O -0.66 -29.63 13.26 -4.80 -0.06 -29.70 16 8 N -0.72 -29.55 10.59 -322.55 -3.42 -32.97 16 9 C 0.47 18.72 8.07 133.95 1.08 19.80 16 10 C -0.35 -13.13 9.52 22.25 0.21 -12.92 16 11 C 0.18 5.86 11.45 83.22 0.95 6.81 16 12 N -0.35 -12.84 3.63 -350.84 -1.28 -14.11 16 13 C 0.27 10.99 6.19 85.64 0.53 11.52 16 14 C -0.56 -26.50 9.39 25.60 0.24 -26.26 16 15 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.03 1.39 5.46 84.65 0.46 1.85 16 17 N -0.91 -45.86 13.29 21.45 0.28 -45.58 16 18 Si 0.96 39.04 29.54 68.60 2.03 41.07 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 N -0.47 -16.84 7.38 -54.79 -0.40 -17.25 16 23 H 0.45 14.44 8.96 -213.28 -1.91 12.53 16 24 C -0.19 -2.82 5.15 -10.80 -0.06 -2.88 16 25 C -0.17 -2.16 9.73 30.59 0.30 -1.86 16 26 C -0.16 -2.03 9.67 30.59 0.30 -1.73 16 27 H 0.05 1.13 6.57 -2.38 -0.02 1.11 16 28 H 0.07 1.19 7.29 -2.39 -0.02 1.17 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.39 5.71 7.56 -74.06 -0.56 5.14 16 31 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.40 11.89 7.09 -92.71 -0.66 11.23 16 34 H 0.17 6.96 5.77 -2.91 -0.02 6.95 16 35 H 0.22 5.45 8.06 -2.91 -0.02 5.43 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.91 16 38 H 0.27 13.03 8.31 -92.70 -0.77 12.26 16 39 H 0.12 1.65 8.11 -2.39 -0.02 1.63 16 40 H 0.10 1.20 6.38 -2.39 -0.02 1.19 16 41 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.28 7.61 -2.39 -0.02 1.26 16 Total: -1.00 -62.88 360.05 -2.65 -65.53 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -2.06 Total: 42.99 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 6.55 Total: 27.61 kcal Atomic # 7 Polarization: -127.50 SS G_CDS: -7.30 Total: -134.80 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.86 Total: -42.40 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -62.88 -2.65 -65.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438325389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.772 kcal (2) G-P(sol) polarization free energy of solvation -62.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds