Wall clock time and date at job start Fri Apr 10 2020 17:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42903 * 109.47094 * 2 1 4 4 C 1.53004 * 109.47478 * 240.00136 * 2 1 3 5 5 N 1.46495 * 109.46738 * 59.99687 * 4 2 1 6 6 C 1.34777 * 119.99663 * 179.97438 * 5 4 2 7 7 O 1.21843 * 120.00114 * 0.02562 * 6 5 4 8 8 N 1.33832 * 120.00147 * 180.27726 * 6 5 4 9 9 C 1.32931 * 120.00335 * 179.72624 * 8 6 5 10 10 C 1.41206 * 126.38025 * 0.02599 * 9 8 6 11 11 C 1.34956 * 108.25105 * 179.97438 * 10 9 8 12 12 N 1.36454 * 108.94396 * 359.97438 * 11 10 9 13 13 C 1.46497 * 125.85130 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46839 * 84.98263 * 13 12 11 15 15 H 1.07998 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00297 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00421 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99740 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47026 * 90.00018 * 18 16 14 20 20 H 1.48498 * 109.46944 * 210.00034 * 18 16 14 21 21 H 1.48497 * 109.46902 * 329.99594 * 18 16 14 22 22 N 1.37423 * 126.38130 * 179.71062 * 9 8 6 23 23 H 0.97004 * 126.36573 * 0.03671 * 22 9 8 24 24 C 1.53000 * 109.47218 * 120.00023 * 2 1 3 25 25 C 1.53001 * 117.49651 * 13.74603 * 24 2 1 26 26 C 1.53003 * 117.49700 * 305.08819 * 24 2 1 27 27 H 1.09006 * 109.47169 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47618 * 299.99924 * 1 2 3 29 29 H 1.09007 * 109.47244 * 60.00271 * 1 2 3 30 30 H 0.96704 * 114.00151 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46621 * 299.99917 * 4 2 1 32 32 H 1.08997 * 109.46991 * 180.02562 * 4 2 1 33 33 H 0.97000 * 120.00601 * 0.02562 * 5 4 2 34 34 H 1.08006 * 125.87181 * 359.92613 * 10 9 8 35 35 H 1.07998 * 125.52710 * 180.02562 * 11 10 9 36 36 H 1.08999 * 109.47563 * 204.97521 * 13 12 11 37 37 H 1.08996 * 109.47475 * 324.98421 * 13 12 11 38 38 H 0.97005 * 120.00376 * 179.97438 * 17 16 14 39 39 H 1.08998 * 115.55188 * 159.41493 * 24 2 1 40 40 H 1.09004 * 117.49847 * 0.02562 * 25 24 2 41 41 H 1.09007 * 117.49640 * 145.01956 * 25 24 2 42 42 H 1.08996 * 117.49641 * 214.97396 * 26 24 2 43 43 H 1.08996 * 117.50053 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0306 -2.4453 6 6 1.8777 -0.4907 -3.6694 7 8 2.5783 -1.4813 -3.7813 8 7 1.4362 0.1434 -4.7622 9 6 1.7623 -0.3073 -5.9695 10 6 2.5615 -1.4360 -6.2546 11 6 2.6563 -1.5590 -7.5952 12 7 1.9478 -0.5523 -8.1837 13 6 1.8025 -0.3341 -9.6250 14 6 0.6680 -1.1765 -10.1487 15 1 0.1112 -1.8112 -9.4753 16 6 0.3409 -1.1369 -11.4875 17 7 -0.6489 -1.8725 -11.9446 18 14 1.3044 -0.0396 -12.6524 19 1 2.4529 -0.7978 -13.2103 20 1 0.4199 0.4046 -13.7593 21 1 1.8063 1.1467 -11.9134 22 7 1.3795 0.2350 -7.1728 23 1 0.8214 1.0183 -7.2991 24 6 2.0400 -0.7212 1.2492 25 6 1.0325 -1.5533 2.0453 26 6 1.5399 -0.2225 2.6065 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 2.9703 1.4237 0.0004 31 1 1.6767 -1.7489 -1.2492 32 1 3.1300 -0.7216 -1.2490 33 1 0.9942 0.7582 -2.3564 34 1 3.0188 -2.0881 -5.5251 35 1 3.2035 -2.3298 -8.1175 36 1 1.5907 0.7183 -9.8137 37 1 2.7267 -0.6149 -10.1300 38 1 -0.8793 -1.8443 -12.8865 39 1 3.0646 -1.0889 1.1945 40 1 0.0065 -1.5871 1.6788 41 1 1.3946 -2.4681 2.5146 42 1 2.2355 -0.2625 3.4447 43 1 0.8473 0.6191 2.6095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438325395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:24 Heat of formation + Delta-G solvation = 29.838227 kcal Electronic energy + Delta-G solvation = -24623.103437 eV Core-core repulsion = 20899.426007 eV Total energy + Delta-G solvation = -3723.677430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27360 -40.79552 -39.75092 -36.66792 -35.97480 -35.10184 -34.54459 -32.65088 -32.50327 -31.36194 -28.89626 -27.74185 -24.89684 -24.06912 -23.25144 -22.81595 -22.58151 -21.25893 -20.55293 -19.25318 -18.99494 -17.91923 -17.73202 -16.95798 -16.64972 -16.52469 -16.49048 -16.00247 -15.73616 -15.29263 -15.04845 -14.81861 -14.74131 -14.46209 -14.20891 -13.91514 -13.83970 -13.55247 -13.31798 -13.17219 -12.81020 -12.59282 -12.23386 -12.09713 -11.83976 -11.80548 -11.43848 -11.28554 -11.25900 -11.09307 -10.90585 -10.81570 -10.51009 -9.92850 -9.90443 -8.41961 -8.32679 -6.55189 0.28554 0.59646 1.39951 1.41339 1.49878 1.67588 2.26700 2.28987 2.79228 2.91231 3.02964 3.14681 3.46355 3.55255 3.78188 3.91795 3.92293 4.12147 4.19939 4.26849 4.36113 4.43167 4.54642 4.63252 4.72185 4.77206 4.82464 4.86888 4.94709 4.97124 5.05117 5.16285 5.17161 5.25355 5.30153 5.34265 5.72650 5.93419 6.02672 6.10880 6.43896 6.55547 6.79418 6.90430 7.00791 7.11128 8.12931 8.74830 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.041099 B = 0.002179 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.122677 B =12847.510158 C =12873.922007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 O -0.562 6.562 4 C 0.121 3.879 5 N -0.711 5.711 6 C 0.671 3.329 7 O -0.661 6.661 8 N -0.722 5.722 9 C 0.472 3.528 10 C -0.346 4.346 11 C 0.179 3.821 12 N -0.350 5.350 13 C 0.235 3.765 14 C -0.566 4.566 15 H 0.032 0.968 16 C 0.022 3.978 17 N -0.936 5.936 18 Si 0.951 3.049 19 H -0.256 1.256 20 H -0.289 1.289 21 H -0.233 1.233 22 N -0.467 5.467 23 H 0.453 0.547 24 C -0.193 4.193 25 C -0.177 4.177 26 C -0.157 4.157 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.388 0.612 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.405 0.595 34 H 0.172 0.828 35 H 0.226 0.774 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.273 0.727 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.623 5.278 19.973 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.123 3.877 3 O -0.369 6.369 4 C -0.005 4.005 5 N -0.366 5.366 6 C 0.369 3.631 7 O -0.546 6.546 8 N -0.487 5.487 9 C 0.218 3.782 10 C -0.379 4.379 11 C 0.036 3.964 12 N -0.136 5.136 13 C 0.117 3.883 14 C -0.604 4.604 15 H 0.051 0.949 16 C -0.179 4.179 17 N -0.574 5.574 18 Si 0.772 3.228 19 H -0.180 1.180 20 H -0.215 1.215 21 H -0.155 1.155 22 N -0.191 5.191 23 H 0.301 0.699 24 C -0.212 4.212 25 C -0.213 4.213 26 C -0.194 4.194 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.240 0.760 34 H 0.189 0.811 35 H 0.243 0.757 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.791 5.494 19.627 21.482 hybrid contribution 0.218 -0.048 -0.870 0.898 sum 7.008 5.446 18.756 20.750 Atomic orbital electron populations 1.21905 0.92276 1.03055 1.02939 1.20716 0.94977 0.81714 0.90337 1.86529 1.28111 1.25469 1.96816 1.21803 0.98661 0.96186 0.83810 1.44560 1.56093 1.32988 1.02933 1.16957 0.79596 0.81896 0.84617 1.90700 1.45136 1.31068 1.87711 1.68101 1.44122 1.41439 0.95016 1.18926 0.86270 0.87612 0.85355 1.22312 1.14386 1.05360 0.95826 1.23365 0.90568 0.89017 0.93450 1.47428 1.42281 1.22025 1.01872 1.20251 0.99050 0.99145 0.69898 1.21440 1.17152 1.27117 0.94672 0.94940 1.25853 0.95665 0.96567 0.99818 1.70039 1.30167 1.41110 1.16090 0.85688 0.78764 0.79885 0.78457 1.18015 1.21463 1.15547 1.44372 1.48912 1.27391 0.98410 0.69863 1.22843 1.00339 1.05553 0.92507 1.23242 0.99431 0.95655 1.03022 1.22926 1.03560 0.97728 0.95194 0.90062 0.90646 0.92647 0.76224 0.92275 0.92392 0.75951 0.81072 0.75738 0.91529 0.88797 0.91800 0.86937 0.87780 0.87775 0.87658 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.33 71.98 0.53 -2.12 16 2 C 0.16 3.05 0.88 -10.79 -0.01 3.04 16 3 O -0.56 -10.74 12.70 -148.98 -1.89 -12.63 16 4 C 0.12 3.04 4.78 86.38 0.41 3.45 16 5 N -0.71 -22.26 5.15 -479.06 -2.47 -24.73 16 6 C 0.67 26.96 8.47 179.35 1.52 28.48 16 7 O -0.66 -29.49 13.26 -4.81 -0.06 -29.55 16 8 N -0.72 -29.18 10.59 -322.55 -3.42 -32.60 16 9 C 0.47 18.46 8.07 133.95 1.08 19.54 16 10 C -0.35 -12.91 9.52 22.24 0.21 -12.70 16 11 C 0.18 5.71 11.45 83.22 0.95 6.66 16 12 N -0.35 -12.10 3.63 -350.85 -1.28 -13.38 16 13 C 0.23 8.38 5.26 85.63 0.45 8.83 16 14 C -0.57 -27.34 9.94 25.60 0.25 -27.08 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 16 C 0.02 1.07 5.47 84.65 0.46 1.53 16 17 N -0.94 -52.55 13.96 21.45 0.30 -52.26 16 18 Si 0.95 35.34 27.47 68.60 1.88 37.22 16 19 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 20 H -0.29 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.23 -7.39 6.54 99.48 0.65 -6.74 16 22 N -0.47 -16.19 7.38 -54.79 -0.40 -16.60 16 23 H 0.45 13.69 8.96 -213.27 -1.91 11.78 16 24 C -0.19 -2.87 5.32 -10.79 -0.06 -2.93 16 25 C -0.18 -2.28 9.66 30.62 0.30 -1.98 16 26 C -0.16 -1.97 9.86 30.62 0.30 -1.67 16 27 H 0.08 1.37 6.74 -2.38 -0.02 1.36 16 28 H 0.07 1.21 6.96 -2.39 -0.02 1.19 16 29 H 0.05 1.15 6.86 -2.38 -0.02 1.14 16 30 H 0.39 5.33 9.05 -74.05 -0.67 4.66 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.40 11.88 7.29 -92.71 -0.68 11.20 16 34 H 0.17 6.89 5.77 -2.91 -0.02 6.88 16 35 H 0.23 5.19 8.06 -2.91 -0.02 5.16 16 36 H 0.07 2.20 7.20 -2.39 -0.02 2.18 16 37 H 0.09 2.84 7.57 -2.39 -0.02 2.82 16 38 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 39 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.32 5.89 -2.38 -0.01 1.31 16 41 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.27 7.28 -2.39 -0.02 1.25 16 Total: -1.00 -70.73 355.61 -3.17 -73.90 By element: Atomic # 1 Polarization: 49.80 SS G_CDS: -2.24 Total: 47.56 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 6.40 Total: 23.05 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -7.26 Total: -139.56 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.96 Total: -42.18 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 1.88 Total: 37.22 kcal Total: -70.73 -3.17 -73.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438325395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.738 kcal (2) G-P(sol) polarization free energy of solvation -70.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds