Wall clock time and date at job start Fri Apr 10 2020 17:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31510 * 120.00028 * 164.58493 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21362 * 119.99979 * 359.97438 * 13 12 2 15 15 C 1.49324 * 120.00266 * 179.97438 * 13 12 2 16 16 O 1.21409 * 119.99671 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00266 * 180.02562 * 15 13 12 18 18 C 1.40482 * 120.00218 * 179.97438 * 17 15 13 19 19 C 1.40347 * 126.11128 * 0.02562 * 18 17 15 20 20 N 1.30826 * 108.20674 * 180.02562 * 19 18 17 21 21 N 1.40058 * 108.36422 * 359.97438 * 20 19 18 22 22 C 1.46502 * 125.98974 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47137 * 255.02242 * 22 21 20 24 24 C 1.52997 * 109.47436 * 15.02636 * 22 21 20 25 25 C 1.53008 * 109.47133 * 135.02705 * 22 21 20 26 26 C 1.35221 * 108.01538 * 359.73785 * 21 20 19 27 27 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 28 28 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 29 29 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 30 30 H 0.96999 * 120.00545 * 355.19134 * 7 6 4 31 31 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 32 32 H 0.97002 * 120.00007 * 359.97438 * 17 15 13 33 33 H 1.07996 * 125.89689 * 0.02562 * 19 18 17 34 34 H 1.09004 * 109.46664 * 60.00369 * 23 22 21 35 35 H 1.09001 * 109.47396 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.47363 * 300.00224 * 23 22 21 37 37 H 1.08999 * 109.47260 * 60.00050 * 24 22 21 38 38 H 1.08999 * 109.47493 * 179.97438 * 24 22 21 39 39 H 1.08995 * 109.47280 * 299.99895 * 24 22 21 40 40 H 1.08996 * 109.46716 * 59.99653 * 25 22 21 41 41 H 1.08999 * 109.47314 * 180.02562 * 25 22 21 42 42 H 1.08998 * 109.46548 * 299.99838 * 25 22 21 43 43 H 1.07997 * 126.18480 * 180.26278 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9542 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8582 1.1591 -2.4117 15 6 2.6454 -0.7221 -3.5762 16 8 2.9349 -1.8999 -3.5215 17 7 2.7748 -0.0496 -4.7370 18 6 3.2440 -0.7116 -5.8838 19 6 3.6129 -2.0632 -5.9659 20 7 3.9964 -2.3085 -7.1924 21 7 3.8856 -1.1257 -7.9343 22 6 4.2153 -0.9650 -9.3526 23 6 5.5407 -0.2125 -9.4861 24 6 4.3429 -2.3426 -10.0059 25 6 3.1064 -0.1719 -10.0473 26 6 3.4160 -0.1594 -7.1131 27 1 -0.3632 0.6107 -0.8266 28 1 -0.3633 -1.0211 -0.1156 29 1 -0.3633 0.4106 0.9420 30 1 2.1697 -1.8615 3.4635 31 1 2.2490 -1.6319 -1.1526 32 1 2.5438 0.8915 -4.7807 33 1 3.5850 -2.7775 -5.1564 34 1 6.3306 -0.7775 -8.9912 35 1 5.7858 -0.0925 -10.5414 36 1 5.4498 0.7690 -9.0208 37 1 3.3986 -2.8787 -9.9109 38 1 4.5877 -2.2231 -11.0613 39 1 5.1328 -2.9076 -9.5111 40 1 3.0155 0.8095 -9.5819 41 1 3.3514 -0.0527 -11.1027 42 1 2.1622 -0.7080 -9.9522 43 1 3.2168 0.8667 -7.3845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438816333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:29 Heat of formation + Delta-G solvation = 7.187247 kcal Electronic energy + Delta-G solvation = -24983.180205 eV Core-core repulsion = 21258.520555 eV Total energy + Delta-G solvation = -3724.659650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67603 -40.16360 -38.25985 -37.05000 -35.43053 -34.45099 -32.46476 -30.80776 -29.92539 -29.16317 -27.92384 -27.69862 -25.13517 -24.51618 -22.90085 -21.46115 -20.59735 -19.89521 -19.36818 -18.41494 -17.53337 -17.03663 -16.37860 -15.83329 -15.55915 -15.35658 -15.08300 -14.69080 -14.28398 -14.12030 -13.90158 -13.46143 -13.22435 -13.06506 -12.78740 -12.74923 -12.69517 -12.60251 -12.25141 -12.24460 -11.78054 -11.70781 -11.63202 -11.46582 -11.18154 -10.87632 -10.82036 -10.59094 -10.19171 -9.70477 -9.53162 -9.20113 -9.09026 -8.47159 -8.36162 -7.85340 -6.60668 -4.26162 1.41681 1.90298 2.08711 2.75001 2.79677 3.38378 3.42071 3.55952 3.66270 4.00164 4.10949 4.27842 4.38563 4.40823 4.53100 4.82596 4.96191 4.97866 5.04842 5.14426 5.16028 5.21665 5.25100 5.33646 5.42445 5.48058 5.52134 5.69269 5.83728 6.03814 6.29550 6.43827 6.56547 6.71473 6.81679 6.82930 7.00401 7.22086 7.22647 7.51271 7.58539 7.90059 8.20597 8.28473 8.50863 8.77221 9.43009 10.79349 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.002499 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.427703 B =11202.222018 C =11528.519633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.239 3.761 3 H 0.048 0.952 4 C -0.620 4.620 5 H 0.065 0.935 6 C 0.041 3.959 7 N -0.896 5.896 8 Si 1.039 2.961 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.283 1.283 12 N -0.662 5.662 13 C 0.498 3.502 14 O -0.539 6.539 15 C 0.509 3.491 16 O -0.513 6.513 17 N -0.619 5.619 18 C 0.000 4.000 19 C 0.051 3.949 20 N -0.284 5.284 21 N -0.359 5.359 22 C 0.185 3.815 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.160 4.160 26 C 0.022 3.978 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.271 0.729 31 H 0.407 0.593 32 H 0.421 0.579 33 H 0.207 0.793 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 2.467 -28.103 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.657 4.657 5 H 0.083 0.917 6 C -0.166 4.166 7 N -0.528 5.528 8 Si 0.866 3.134 9 H -0.209 1.209 10 H -0.192 1.192 11 H -0.209 1.209 12 N -0.311 5.311 13 C 0.277 3.723 14 O -0.418 6.418 15 C 0.291 3.709 16 O -0.387 6.387 17 N -0.265 5.265 18 C -0.105 4.105 19 C -0.136 4.136 20 N -0.105 5.105 21 N -0.144 5.144 22 C 0.102 3.898 23 C -0.218 4.218 24 C -0.202 4.202 25 C -0.218 4.218 26 C -0.126 4.126 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.242 0.758 32 H 0.258 0.742 33 H 0.223 0.777 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.286 2.754 -27.821 28.150 hybrid contribution 0.078 -0.507 -0.464 0.692 sum 3.364 2.247 -28.286 28.573 Atomic orbital electron populations 1.22463 0.98376 1.00293 1.00342 1.19276 0.90902 0.94389 0.81767 0.93455 1.22086 1.41479 1.11451 0.90719 0.91680 1.25697 0.93884 1.05501 0.91504 1.70810 1.42943 1.08441 1.30644 0.84183 0.77596 0.75236 0.76431 1.20946 1.19181 1.20868 1.46230 1.61367 1.14718 1.08761 1.19702 0.80813 0.87198 0.84575 1.90714 1.50994 1.15281 1.84843 1.20647 0.78782 0.86983 0.84452 1.90623 1.47925 1.15603 1.84567 1.42461 1.63107 1.14307 1.06670 1.17776 1.11774 0.93674 0.87272 1.24562 0.98519 0.95281 0.95190 1.77366 1.23701 1.05328 1.04102 1.48495 1.50660 1.06581 1.08699 1.20692 0.95633 0.97908 0.75547 1.22274 0.95862 1.00603 1.03084 1.21913 1.03932 0.94272 1.00059 1.22255 0.98117 1.00314 1.01143 1.21660 1.04900 0.96214 0.89800 0.94954 0.93441 0.92015 0.91880 0.75788 0.74212 0.77718 0.91494 0.90412 0.91751 0.91554 0.90958 0.90879 0.91541 0.90096 0.91410 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.76 37.16 0.33 -3.11 16 2 C 0.24 5.66 2.11 -69.08 -0.15 5.52 16 3 H 0.05 1.18 6.21 -51.93 -0.32 0.86 16 4 C -0.62 -16.66 9.02 -34.44 -0.31 -16.97 16 5 H 0.07 1.85 7.96 -52.48 -0.42 1.43 16 6 C 0.04 1.14 5.33 -17.82 -0.09 1.04 16 7 N -0.90 -26.51 13.70 55.43 0.76 -25.75 16 8 Si 1.04 24.37 26.17 -169.99 -4.45 19.92 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -5.82 5.53 56.52 0.31 -5.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.66 -13.77 5.06 -55.40 -0.28 -14.05 16 13 C 0.50 9.53 7.85 -11.65 -0.09 9.44 16 14 O -0.54 -11.09 16.14 5.49 0.09 -11.00 16 15 C 0.51 8.43 7.86 -11.65 -0.09 8.34 16 16 O -0.51 -9.11 13.63 5.45 0.07 -9.03 16 17 N -0.62 -8.36 5.46 -10.48 -0.06 -8.42 16 18 C 0.00 0.00 6.90 -83.95 -0.58 -0.58 16 19 C 0.05 0.74 10.84 -17.19 -0.19 0.55 16 20 N -0.28 -3.79 11.64 30.72 0.36 -3.43 16 21 N -0.36 -3.74 3.44 -48.44 -0.17 -3.90 16 22 C 0.18 1.31 1.24 -131.82 -0.16 1.14 16 23 C -0.16 -0.93 8.73 37.16 0.32 -0.60 16 24 C -0.14 -0.98 8.09 37.16 0.30 -0.68 16 25 C -0.16 -0.80 8.29 37.16 0.31 -0.50 16 26 C 0.02 0.23 10.64 -16.91 -0.18 0.05 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.36 5.06 -51.93 -0.26 1.10 16 30 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 31 H 0.41 8.11 7.99 -40.82 -0.33 7.78 16 32 H 0.42 4.86 8.29 -40.82 -0.34 4.53 16 33 H 0.21 3.12 5.92 -52.49 -0.31 2.81 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 40 H 0.07 0.29 7.36 -51.93 -0.38 -0.09 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 1.15 7.55 -52.49 -0.40 0.76 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -31.90 357.02 -5.10 -37.00 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.22 Total: 9.65 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.58 Total: 3.64 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.61 Total: -55.55 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.03 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.45 Total: 19.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.90 -5.10 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438816333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.188 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds