Wall clock time and date at job start Fri Apr 10 2020 17:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31510 * 120.00028 * 164.58493 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21362 * 119.99979 * 359.97438 * 13 12 2 15 15 C 1.49324 * 120.00266 * 179.97438 * 13 12 2 16 16 O 1.21409 * 119.99671 * 359.97438 * 15 13 12 17 17 N 1.34774 * 120.00266 * 180.02562 * 15 13 12 18 18 C 1.40482 * 120.00218 * 179.97438 * 17 15 13 19 19 C 1.40347 * 126.11128 * 0.02562 * 18 17 15 20 20 N 1.30826 * 108.20674 * 180.02562 * 19 18 17 21 21 N 1.40058 * 108.36422 * 359.97438 * 20 19 18 22 22 C 1.46502 * 125.98974 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47137 * 255.02242 * 22 21 20 24 24 C 1.52997 * 109.47436 * 15.02636 * 22 21 20 25 25 C 1.53008 * 109.47133 * 135.02705 * 22 21 20 26 26 C 1.35221 * 108.01538 * 359.73785 * 21 20 19 27 27 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 28 28 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 29 29 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 30 30 H 0.96999 * 120.00545 * 355.19134 * 7 6 4 31 31 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 32 32 H 0.97002 * 120.00007 * 359.97438 * 17 15 13 33 33 H 1.07996 * 125.89689 * 0.02562 * 19 18 17 34 34 H 1.09004 * 109.46664 * 60.00369 * 23 22 21 35 35 H 1.09001 * 109.47396 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.47363 * 300.00224 * 23 22 21 37 37 H 1.08999 * 109.47260 * 60.00050 * 24 22 21 38 38 H 1.08999 * 109.47493 * 179.97438 * 24 22 21 39 39 H 1.08995 * 109.47280 * 299.99895 * 24 22 21 40 40 H 1.08996 * 109.46716 * 59.99653 * 25 22 21 41 41 H 1.08999 * 109.47314 * 180.02562 * 25 22 21 42 42 H 1.08998 * 109.46548 * 299.99838 * 25 22 21 43 43 H 1.07997 * 126.18480 * 180.26278 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9542 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8582 1.1591 -2.4117 15 6 2.6454 -0.7221 -3.5762 16 8 2.9349 -1.8999 -3.5215 17 7 2.7748 -0.0496 -4.7370 18 6 3.2440 -0.7116 -5.8838 19 6 3.6129 -2.0632 -5.9659 20 7 3.9964 -2.3085 -7.1924 21 7 3.8856 -1.1257 -7.9343 22 6 4.2153 -0.9650 -9.3526 23 6 5.5407 -0.2125 -9.4861 24 6 4.3429 -2.3426 -10.0059 25 6 3.1064 -0.1719 -10.0473 26 6 3.4160 -0.1594 -7.1131 27 1 -0.3632 0.6107 -0.8266 28 1 -0.3633 -1.0211 -0.1156 29 1 -0.3633 0.4106 0.9420 30 1 2.1697 -1.8615 3.4635 31 1 2.2490 -1.6319 -1.1526 32 1 2.5438 0.8915 -4.7807 33 1 3.5850 -2.7775 -5.1564 34 1 6.3306 -0.7775 -8.9912 35 1 5.7858 -0.0925 -10.5414 36 1 5.4498 0.7690 -9.0208 37 1 3.3986 -2.8787 -9.9109 38 1 4.5877 -2.2231 -11.0613 39 1 5.1328 -2.9076 -9.5111 40 1 3.0155 0.8095 -9.5819 41 1 3.3514 -0.0527 -11.1027 42 1 2.1622 -0.7080 -9.9522 43 1 3.2168 0.8667 -7.3845 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438816333.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:28 Heat of formation + Delta-G solvation = -16.705993 kcal Electronic energy + Delta-G solvation = -24984.216294 eV Core-core repulsion = 21258.520555 eV Total energy + Delta-G solvation = -3725.695739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.64243 -41.51103 -39.67475 -37.76726 -37.10518 -35.72349 -34.44564 -31.74303 -31.65537 -30.13736 -28.33093 -28.25895 -26.96152 -26.05550 -23.80676 -22.92480 -21.64547 -21.42745 -20.65820 -19.81181 -19.04829 -18.14676 -17.69911 -17.07088 -16.76417 -16.55023 -16.25929 -15.61986 -15.49497 -15.18515 -14.98244 -14.82486 -14.62659 -14.57251 -14.25040 -13.93945 -13.53007 -13.34220 -13.22557 -13.20755 -13.12592 -12.72230 -12.62244 -12.44596 -12.35250 -12.22618 -12.06427 -11.87278 -11.64980 -11.47051 -11.13050 -10.67932 -10.57599 -10.42156 -10.11513 -8.85227 -8.81298 -6.47223 0.17824 0.87439 1.15309 1.51966 1.53744 1.59294 1.67362 1.74096 2.28684 2.46755 2.74806 3.01275 3.43798 3.45959 3.78000 3.81764 3.89748 4.02582 4.41039 4.45146 4.45919 4.63285 4.66663 4.68793 4.72422 4.73229 4.77703 4.84724 4.86275 4.93326 5.02213 5.11806 5.26362 5.28832 5.32979 5.44081 5.55901 5.66304 5.96931 6.01015 6.07716 6.44360 6.49715 6.62618 6.80970 6.99400 7.30183 8.57802 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.038064 B = 0.002499 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.427703 B =11202.222018 C =11528.519633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.242 3.758 3 H 0.041 0.959 4 C -0.618 4.618 5 H 0.036 0.964 6 C -0.006 4.006 7 N -0.927 5.927 8 Si 1.076 2.924 9 H -0.275 1.275 10 H -0.239 1.239 11 H -0.280 1.280 12 N -0.671 5.671 13 C 0.504 3.496 14 O -0.550 6.550 15 C 0.511 3.489 16 O -0.531 6.531 17 N -0.597 5.597 18 C -0.033 4.033 19 C 0.031 3.969 20 N -0.307 5.307 21 N -0.350 5.350 22 C 0.172 3.828 23 C -0.156 4.156 24 C -0.143 4.143 25 C -0.156 4.156 26 C 0.052 3.948 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.258 0.742 31 H 0.409 0.591 32 H 0.432 0.568 33 H 0.187 0.813 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.790 5.129 -31.436 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.138 3.862 3 H 0.059 0.941 4 C -0.656 4.656 5 H 0.054 0.946 6 C -0.206 4.206 7 N -0.561 5.561 8 Si 0.896 3.104 9 H -0.201 1.201 10 H -0.163 1.163 11 H -0.206 1.206 12 N -0.320 5.320 13 C 0.284 3.716 14 O -0.429 6.429 15 C 0.293 3.707 16 O -0.408 6.408 17 N -0.243 5.243 18 C -0.137 4.137 19 C -0.155 4.155 20 N -0.129 5.129 21 N -0.135 5.135 22 C 0.091 3.909 23 C -0.214 4.214 24 C -0.200 4.200 25 C -0.214 4.214 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.244 0.756 32 H 0.271 0.729 33 H 0.204 0.796 34 H 0.066 0.934 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.895 5.411 -31.230 31.827 hybrid contribution 0.302 -1.388 0.347 1.462 sum 3.197 4.023 -30.883 31.308 Atomic orbital electron populations 1.22369 0.96759 1.00956 1.00941 1.19045 0.92034 0.93562 0.81531 0.94109 1.22238 1.40516 1.10388 0.92480 0.94621 1.27022 0.93552 1.08713 0.91357 1.70925 1.45531 1.07988 1.31699 0.83731 0.78006 0.70991 0.77625 1.20053 1.16263 1.20567 1.46078 1.62241 1.14840 1.08852 1.20007 0.79899 0.86947 0.84790 1.90694 1.51282 1.15766 1.85195 1.20056 0.79473 0.86652 0.84513 1.90642 1.49180 1.16212 1.84752 1.42204 1.61737 1.14546 1.05861 1.17906 1.14319 0.93501 0.88022 1.24377 0.99780 0.95996 0.95356 1.77330 1.24483 1.07056 1.04073 1.49000 1.48876 1.05734 1.09850 1.21185 0.97427 0.98576 0.73694 1.22273 0.94158 1.00184 1.04798 1.21924 1.02445 0.93947 1.01712 1.22276 0.96467 1.00148 1.02527 1.22273 1.01634 0.97527 0.88312 0.93287 0.93121 0.92118 0.93315 0.75592 0.72910 0.79623 0.93448 0.87675 0.91033 0.93000 0.87977 0.92848 0.90251 0.87544 0.92534 0.76586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 8.76 71.98 0.63 -5.80 16 2 C 0.24 11.32 2.11 44.25 0.09 11.41 16 3 H 0.04 1.98 6.21 -2.39 -0.01 1.97 16 4 C -0.62 -33.83 9.02 25.60 0.23 -33.60 16 5 H 0.04 2.11 7.96 -2.91 -0.02 2.09 16 6 C -0.01 -0.34 5.33 84.65 0.45 0.11 16 7 N -0.93 -56.18 13.70 21.44 0.29 -55.89 16 8 Si 1.08 48.39 26.17 68.60 1.80 50.19 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.24 -9.62 5.53 99.48 0.55 -9.07 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 N -0.67 -27.92 5.06 -447.56 -2.27 -30.19 16 13 C 0.50 18.89 7.85 87.23 0.68 19.58 16 14 O -0.55 -21.70 16.14 -3.28 -0.05 -21.75 16 15 C 0.51 16.76 7.86 87.23 0.69 17.45 16 16 O -0.53 -19.30 13.63 -3.43 -0.05 -19.35 16 17 N -0.60 -15.27 5.46 -305.41 -1.67 -16.93 16 18 C -0.03 -0.82 6.90 37.71 0.26 -0.56 16 19 C 0.03 0.89 10.84 85.36 0.93 1.82 16 20 N -0.31 -8.18 11.64 -56.71 -0.66 -8.84 16 21 N -0.35 -6.60 3.44 -307.18 -1.06 -7.66 16 22 C 0.17 1.94 1.24 3.60 0.00 1.95 16 23 C -0.16 -1.30 8.73 71.98 0.63 -0.67 16 24 C -0.14 -1.70 8.09 71.98 0.58 -1.12 16 25 C -0.16 -0.94 8.29 71.98 0.60 -0.34 16 26 C 0.05 0.91 10.64 83.62 0.89 1.79 16 27 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 2.56 5.06 -2.39 -0.01 2.55 16 30 H 0.26 15.79 8.73 -92.71 -0.81 14.98 16 31 H 0.41 16.69 7.99 -92.71 -0.74 15.95 16 32 H 0.43 8.94 8.29 -92.71 -0.77 8.17 16 33 H 0.19 6.03 5.92 -2.91 -0.02 6.01 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.05 0.85 8.04 -2.39 -0.02 0.83 16 40 H 0.08 0.30 7.36 -2.39 -0.02 0.28 16 41 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.22 1.75 7.55 -2.91 -0.02 1.73 16 Total: -1.00 -71.00 357.02 2.35 -68.66 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.66 Total: 29.76 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.66 Total: 12.01 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -5.35 Total: -119.51 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.10 Total: -41.10 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.80 Total: 50.19 kcal Total: -71.00 2.35 -68.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438816333.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.951 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds