Wall clock time and date at job start Fri Apr 10 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21361 * 120.00176 * 359.97438 * 13 12 2 15 15 C 1.49309 * 119.99949 * 180.02562 * 13 12 2 16 16 O 1.21396 * 119.99740 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99949 * 180.02562 * 15 13 12 18 18 C 1.39196 * 119.99998 * 179.97438 * 17 15 13 19 19 C 1.36215 * 126.27074 * 359.68618 * 18 17 15 20 20 C 1.39698 * 107.85998 * 179.90550 * 19 18 17 21 21 N 1.30849 * 108.45433 * 0.36814 * 20 19 18 22 22 N 1.35851 * 126.27432 * 180.02562 * 18 17 15 23 23 C 1.46501 * 126.09609 * 359.93866 * 22 18 17 24 24 C 1.52998 * 109.47141 * 60.00406 * 23 22 18 25 25 C 1.53003 * 109.46992 * 180.02562 * 23 22 18 26 26 C 1.52999 * 109.47209 * 300.00048 * 23 22 18 27 27 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 28 28 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 29 29 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 30 30 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 31 31 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 32 32 H 0.96994 * 120.00190 * 359.97438 * 17 15 13 33 33 H 1.08003 * 126.07419 * 0.03380 * 19 18 17 34 34 H 1.07995 * 125.76967 * 180.14180 * 20 19 18 35 35 H 1.08999 * 109.47282 * 59.99510 * 24 23 22 36 36 H 1.09002 * 109.46959 * 179.97438 * 24 23 22 37 37 H 1.09000 * 109.46567 * 299.99750 * 24 23 22 38 38 H 1.09001 * 109.47001 * 60.00049 * 25 23 22 39 39 H 1.09002 * 109.47109 * 179.97438 * 25 23 22 40 40 H 1.08991 * 109.47199 * 300.00362 * 25 23 22 41 41 H 1.09002 * 109.46778 * 59.99952 * 26 23 22 42 42 H 1.08994 * 109.47514 * 180.02562 * 26 23 22 43 43 H 1.09001 * 109.47237 * 300.00229 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8588 1.1595 2.4115 15 6 2.6453 -0.7218 3.5762 16 8 2.9340 -1.8997 3.5216 17 7 2.7734 -0.0496 4.7372 18 6 3.2374 -0.7057 5.8738 19 6 3.5911 -2.0184 5.9585 20 6 4.0008 -2.2679 7.2706 21 7 3.8934 -1.1585 7.9561 22 7 3.4143 -0.1558 7.1034 23 6 3.1517 1.2376 7.4716 24 6 1.6761 1.5600 7.2279 25 6 3.4820 1.4450 8.9511 26 6 4.0233 2.1631 6.6204 27 1 -0.3633 0.4124 -0.9413 28 1 -0.3633 -1.0214 0.1135 29 1 -0.3633 0.6089 0.8278 30 1 2.2471 -1.8383 -3.4691 31 1 2.2490 -1.6317 1.1527 32 1 2.5424 0.8914 4.7809 33 1 3.5621 -2.7381 5.1537 34 1 4.3442 -3.2169 7.6550 35 1 1.0551 0.9007 7.8343 36 1 1.4806 2.5967 7.5023 37 1 1.4412 1.4123 6.1738 38 1 4.5333 1.2154 9.1243 39 1 3.2870 2.4819 9.2250 40 1 2.8614 0.7857 9.5578 41 1 3.7884 2.0153 5.5663 42 1 3.8283 3.1997 6.8946 43 1 5.0746 1.9333 6.7940 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438877199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:31 Heat of formation + Delta-G solvation = 13.946412 kcal Electronic energy + Delta-G solvation = -25837.806094 eV Core-core repulsion = 22113.439543 eV Total energy + Delta-G solvation = -3724.366551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.84456 -40.25625 -38.36527 -37.11577 -35.66086 -34.78336 -32.55647 -30.42756 -30.03021 -29.24262 -27.88025 -27.75150 -25.35712 -24.74643 -22.62500 -21.91710 -20.51273 -20.05180 -19.75194 -18.39209 -17.47125 -17.06820 -16.43548 -16.09376 -15.57306 -15.39367 -15.16040 -14.58367 -14.28670 -14.09434 -13.78099 -13.51069 -13.39682 -13.25454 -12.83242 -12.75901 -12.64072 -12.43242 -12.32248 -12.21061 -11.91631 -11.71165 -11.62710 -11.57840 -11.24062 -11.18468 -10.62159 -10.58646 -10.15393 -9.89290 -9.40025 -9.21571 -9.10802 -8.54108 -8.42056 -8.22627 -6.68121 -4.32387 1.20336 1.81407 2.02743 2.61332 2.83980 3.30165 3.37030 3.43201 3.51575 3.73719 4.05066 4.32069 4.33272 4.43378 4.73902 4.77439 5.01616 5.02711 5.07880 5.21839 5.22173 5.25726 5.34437 5.39268 5.45431 5.60482 5.73633 5.76924 5.89495 6.02381 6.21177 6.36665 6.48485 6.64876 6.72463 6.76006 6.86775 7.04945 7.16011 7.40544 7.60809 7.66932 8.08164 8.18180 8.35669 8.69395 9.37229 10.73449 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.003244 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.828583 B = 8629.437544 C = 9339.900121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.047 0.953 4 C -0.623 4.623 5 H 0.065 0.935 6 C 0.041 3.959 7 N -0.893 5.893 8 Si 1.042 2.958 9 H -0.281 1.281 10 H -0.271 1.271 11 H -0.279 1.279 12 N -0.657 5.657 13 C 0.500 3.500 14 O -0.536 6.536 15 C 0.513 3.487 16 O -0.485 6.485 17 N -0.629 5.629 18 C 0.308 3.692 19 C -0.280 4.280 20 C 0.056 3.944 21 N -0.288 5.288 22 N -0.378 5.378 23 C 0.176 3.824 24 C -0.166 4.166 25 C -0.137 4.137 26 C -0.166 4.166 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.031 0.969 30 H 0.271 0.729 31 H 0.408 0.592 32 H 0.420 0.580 33 H 0.173 0.827 34 H 0.185 0.815 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 4.452 22.519 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.661 4.661 5 H 0.084 0.916 6 C -0.167 4.167 7 N -0.525 5.525 8 Si 0.869 3.131 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.205 1.205 12 N -0.306 5.306 13 C 0.279 3.721 14 O -0.415 6.415 15 C 0.295 3.705 16 O -0.355 6.355 17 N -0.280 5.280 18 C 0.089 3.911 19 C -0.311 4.311 20 C -0.130 4.130 21 N -0.110 5.110 22 N -0.168 5.168 23 C 0.093 3.907 24 C -0.224 4.224 25 C -0.194 4.194 26 C -0.225 4.225 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.244 0.756 32 H 0.260 0.740 33 H 0.190 0.810 34 H 0.202 0.798 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.239 6.260 22.420 23.310 hybrid contribution 0.409 -1.626 0.301 1.704 sum 1.648 4.633 22.721 23.247 Atomic orbital electron populations 1.22529 0.98150 1.00624 1.00825 1.19265 0.91074 0.94328 0.81600 0.93539 1.22055 1.42343 1.10919 0.90753 0.91644 1.25705 0.94202 1.05175 0.91569 1.70870 1.40328 1.10052 1.31244 0.84088 0.77578 0.74942 0.76511 1.20693 1.19676 1.20520 1.46257 1.60971 1.14787 1.08559 1.19520 0.81082 0.87198 0.84343 1.90726 1.51039 1.15110 1.84666 1.20812 0.78551 0.87135 0.84048 1.90699 1.45589 1.15177 1.84066 1.42825 1.63479 1.14990 1.06747 1.18102 0.99903 0.91876 0.81256 1.21710 1.15192 0.94483 0.99706 1.23744 0.99197 0.97377 0.92666 1.77368 1.21645 0.96322 1.15620 1.49111 1.53787 1.09106 1.04755 1.20784 0.95845 0.76305 0.97764 1.22357 0.93853 1.03452 1.02781 1.21833 1.03440 1.02174 0.91981 1.22361 1.00591 0.99801 0.99732 0.91359 0.93287 0.94978 0.91878 0.75641 0.73957 0.80995 0.79773 0.91166 0.89642 0.92035 0.91206 0.90917 0.91214 0.92015 0.89640 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.16 37.16 0.34 -3.14 16 2 C 0.24 5.51 2.14 -69.08 -0.15 5.36 16 3 H 0.05 1.13 6.23 -51.93 -0.32 0.80 16 4 C -0.62 -16.39 9.00 -34.44 -0.31 -16.70 16 5 H 0.07 1.82 7.96 -52.49 -0.42 1.40 16 6 C 0.04 1.11 5.29 -17.82 -0.09 1.02 16 7 N -0.89 -25.95 13.70 55.43 0.76 -25.19 16 8 Si 1.04 23.94 26.29 -169.99 -4.47 19.48 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.27 -5.74 5.76 56.52 0.33 -5.42 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.66 -13.17 5.06 -55.41 -0.28 -13.45 16 13 C 0.50 9.22 7.85 -11.65 -0.09 9.13 16 14 O -0.54 -10.58 16.14 5.49 0.09 -10.49 16 15 C 0.51 8.28 7.85 -11.65 -0.09 8.19 16 16 O -0.48 -8.35 13.60 5.46 0.07 -8.28 16 17 N -0.63 -8.64 4.72 -11.80 -0.06 -8.70 16 18 C 0.31 4.24 7.02 -152.86 -1.07 3.17 16 19 C -0.28 -3.91 9.65 -39.76 -0.38 -4.30 16 20 C 0.06 0.67 12.00 -17.43 -0.21 0.47 16 21 N -0.29 -3.68 11.64 30.59 0.36 -3.32 16 22 N -0.38 -4.59 3.48 -47.61 -0.17 -4.75 16 23 C 0.18 1.60 1.06 -131.82 -0.14 1.46 16 24 C -0.17 -1.35 8.48 37.16 0.31 -1.03 16 25 C -0.14 -1.05 7.99 37.16 0.30 -0.75 16 26 C -0.17 -1.37 8.47 37.16 0.31 -1.06 16 27 H 0.07 1.49 4.88 -51.93 -0.25 1.24 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 31 H 0.41 7.80 7.99 -40.82 -0.33 7.47 16 32 H 0.42 5.16 4.43 -40.82 -0.18 4.98 16 33 H 0.17 2.57 5.83 -52.48 -0.31 2.27 16 34 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.56 5.90 -51.93 -0.31 0.25 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.57 5.90 -51.93 -0.31 0.27 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -30.48 349.75 -5.57 -36.05 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.88 Total: 11.57 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -1.27 Total: 1.82 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.61 Total: -55.41 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.77 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.47 Total: 19.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.48 -5.57 -36.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438877199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.999 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds