Wall clock time and date at job start Fri Apr 10 2020 17:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47441 * 2 1 4 4 N 1.30828 * 125.90097 * 270.31555 * 3 2 1 5 5 N 1.40052 * 108.36664 * 180.11110 * 4 3 2 6 6 C 1.46505 * 125.99035 * 179.87180 * 5 4 3 7 7 C 1.35225 * 108.01280 * 359.61397 * 5 4 3 8 8 C 1.35852 * 107.64060 * 0.22728 * 7 5 4 9 9 N 1.40485 * 126.11346 * 179.97438 * 8 7 5 10 10 C 1.34782 * 119.99790 * 359.97438 * 9 8 7 11 11 O 1.21403 * 119.99943 * 359.97438 * 10 9 8 12 12 C 1.49323 * 119.99893 * 179.97438 * 10 9 8 13 13 O 1.21366 * 120.00248 * 354.16595 * 12 10 9 14 14 N 1.34778 * 120.00141 * 174.16494 * 12 10 9 15 15 C 1.46505 * 119.99722 * 3.63544 * 14 12 10 16 16 C 1.46498 * 120.00082 * 183.63190 * 14 12 10 17 17 H 1.09005 * 109.47041 * 0.02562 * 16 14 12 18 18 C 1.53007 * 109.46913 * 120.00126 * 16 14 12 19 19 C 1.50697 * 109.47151 * 239.99787 * 16 14 12 20 20 H 1.08005 * 120.00067 * 0.02562 * 19 16 14 21 21 C 1.37877 * 119.99915 * 179.97438 * 19 16 14 22 22 N 1.31519 * 120.00186 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99973 * 180.02562 * 21 19 16 24 24 H 1.48506 * 109.47060 * 90.00341 * 23 21 19 25 25 H 1.48502 * 109.47452 * 209.99993 * 23 21 19 26 26 H 1.48504 * 109.47214 * 330.00311 * 23 21 19 27 27 H 1.08996 * 109.47152 * 59.99471 * 1 2 3 28 28 H 1.08993 * 109.46990 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46738 * 299.99704 * 1 2 3 30 30 H 1.09004 * 109.46738 * 240.00296 * 2 1 3 31 31 H 1.09003 * 109.47549 * 120.00625 * 2 1 3 32 32 H 1.08992 * 109.47431 * 269.69249 * 6 5 4 33 33 H 1.09001 * 109.47069 * 29.69696 * 6 5 4 34 34 H 1.08998 * 109.46407 * 149.69327 * 6 5 4 35 35 H 1.08001 * 126.18005 * 180.22489 * 7 5 4 36 36 H 0.96995 * 120.00244 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47160 * 83.98828 * 15 14 12 38 38 H 1.08999 * 109.46591 * 203.99264 * 15 14 12 39 39 H 1.09001 * 109.46952 * 323.98449 * 15 14 12 40 40 H 1.08998 * 109.46947 * 299.99633 * 18 16 14 41 41 H 1.08991 * 109.47204 * 60.00038 * 18 16 14 42 42 H 1.09003 * 109.46563 * 180.02562 * 18 16 14 43 43 H 0.96996 * 119.99814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2826 2.1460 -1.0597 5 7 2.7325 3.4034 -0.6378 6 6 3.1240 4.5145 -1.5088 7 6 2.7366 3.4140 0.7144 8 6 2.3067 2.1965 1.1369 9 7 2.1629 1.7870 2.4730 10 6 2.4646 2.6371 3.4745 11 8 2.8610 3.7564 3.2219 12 6 2.3113 2.2021 4.8947 13 8 1.8161 1.1236 5.1490 14 7 2.7229 3.0070 5.8943 15 6 3.2471 4.3412 5.5917 16 6 2.6460 2.5480 7.2834 17 1 2.2338 1.5392 7.3103 18 6 4.0476 2.5423 7.8969 19 6 1.7568 3.4757 8.0706 20 1 1.2948 4.3224 7.5846 21 6 1.5323 3.2430 9.4109 22 7 2.0944 2.2117 10.0025 23 14 0.4296 4.3926 10.3865 24 1 -0.9723 3.9070 10.3220 25 1 0.8774 4.4253 11.8020 26 1 0.5069 5.7595 9.8111 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1902 4.4484 -1.7250 33 1 2.5604 4.4620 -2.4403 34 1 2.9125 5.4597 -1.0089 35 1 3.0289 4.2409 1.3446 36 1 1.8466 0.8926 2.6749 37 1 2.4188 5.0420 5.4876 38 1 3.8996 4.6674 6.4015 39 1 3.8130 4.3066 4.6607 40 1 4.6907 1.8712 7.3276 41 1 4.4601 3.5507 7.8699 42 1 3.9904 2.2002 8.9303 43 1 1.9367 2.0483 10.9455 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439326766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:39 Heat of formation + Delta-G solvation = 22.386282 kcal Electronic energy + Delta-G solvation = -25686.251159 eV Core-core repulsion = 21962.250588 eV Total energy + Delta-G solvation = -3724.000570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62027 -40.12671 -38.02167 -35.94492 -35.17436 -34.04202 -32.74148 -31.75586 -29.68299 -29.30494 -26.89027 -26.19121 -25.29117 -24.46501 -23.44781 -21.96721 -20.33876 -20.09434 -18.84046 -17.65689 -16.83039 -16.43486 -16.19631 -15.87708 -15.52284 -15.27604 -14.94245 -14.59010 -14.36507 -14.20485 -13.79015 -13.34771 -13.23224 -13.03543 -12.84691 -12.62681 -12.36937 -12.23497 -11.82569 -11.61505 -11.57202 -11.35936 -11.09351 -10.88633 -10.83302 -10.80436 -10.76930 -10.54387 -10.23831 -10.20417 -9.35137 -9.24411 -8.78257 -8.47230 -7.84809 -7.66538 -6.12020 -4.20149 1.61548 1.83403 2.23122 2.75190 2.88213 3.26157 3.32684 3.35558 3.75763 4.02865 4.32674 4.39730 4.60159 4.76983 4.84694 4.93803 5.06815 5.17204 5.18355 5.19914 5.34700 5.48467 5.54652 5.74613 5.91422 5.95513 6.03207 6.10861 6.27787 6.48316 6.62451 6.71815 6.74408 6.93160 6.95621 7.15263 7.30266 7.37891 7.58921 7.64915 7.88050 8.03566 8.09461 8.35286 8.61405 8.85531 9.46125 10.93439 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.003213 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.321654 B = 8713.322736 C = 9224.723559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C 0.069 3.931 4 N -0.286 5.286 5 N -0.377 5.377 6 C 0.109 3.891 7 C 0.045 3.955 8 C -0.006 4.006 9 N -0.614 5.614 10 C 0.506 3.494 11 O -0.515 6.515 12 C 0.496 3.504 13 O -0.537 6.537 14 N -0.551 5.551 15 C 0.073 3.927 16 C 0.254 3.746 17 H 0.067 0.933 18 C -0.148 4.148 19 C -0.527 4.527 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.888 5.888 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.202 0.798 36 H 0.422 0.578 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.013 0.987 41 H 0.034 0.966 42 H 0.097 0.903 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 1.228 -19.882 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.099 4.099 4 N -0.108 5.108 5 N -0.161 5.161 6 C -0.033 4.033 7 C -0.102 4.102 8 C -0.111 4.111 9 N -0.260 5.260 10 C 0.289 3.711 11 O -0.392 6.392 12 C 0.276 3.724 13 O -0.416 6.416 14 N -0.282 5.282 15 C -0.070 4.070 16 C 0.155 3.845 17 H 0.084 0.916 18 C -0.206 4.206 19 C -0.565 4.565 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.218 0.782 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.394 1.564 -20.988 21.182 hybrid contribution -0.696 0.410 1.579 1.774 sum 1.698 1.974 -19.409 19.583 Atomic orbital electron populations 1.21733 0.93975 1.02221 1.02565 1.19978 0.96392 0.88414 1.03654 1.22146 1.01461 0.97406 0.88905 1.77189 1.20478 0.91055 1.22118 1.48145 1.52015 1.11172 1.04804 1.21819 1.01208 0.85737 0.94519 1.22996 1.03019 0.99864 0.84294 1.17619 1.14027 0.95093 0.84315 1.42620 1.63626 1.17796 1.01937 1.20826 0.77991 0.84859 0.87388 1.90482 1.44541 1.20022 1.84127 1.19522 0.81824 0.85818 0.85190 1.90724 1.44591 1.22374 1.83865 1.48244 1.56926 1.14993 1.08006 1.22137 0.99407 0.83432 1.02024 1.19168 0.94293 0.97711 0.73331 0.91552 1.22117 0.96120 0.98586 1.03811 1.21281 1.29041 1.11915 0.94298 0.92050 1.24883 0.95861 0.95487 0.97453 1.69871 1.43277 1.27755 1.11664 0.86451 0.80711 0.80955 0.79039 1.20543 1.21073 1.19838 0.92425 0.91684 0.92216 0.89943 0.89948 0.90788 0.89412 0.89308 0.78204 0.74073 0.93047 0.91247 0.89389 0.96774 0.94740 0.88456 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.44 6.35 -27.88 -0.18 -0.61 16 3 C 0.07 0.88 6.49 -82.23 -0.53 0.34 16 4 N -0.29 -3.78 12.56 33.76 0.42 -3.35 16 5 N -0.38 -4.46 4.02 -67.95 -0.27 -4.73 16 6 C 0.11 0.76 11.47 59.85 0.69 1.45 16 7 C 0.04 0.60 10.35 -16.91 -0.18 0.42 16 8 C -0.01 -0.09 6.90 -83.95 -0.58 -0.67 16 9 N -0.61 -9.00 5.45 -10.48 -0.06 -9.05 16 10 C 0.51 8.68 7.74 -11.64 -0.09 8.59 16 11 O -0.52 -8.74 10.29 5.45 0.06 -8.68 16 12 C 0.50 10.25 7.73 -11.64 -0.09 10.16 16 13 O -0.54 -12.25 15.82 5.48 0.09 -12.16 16 14 N -0.55 -11.98 2.75 -175.81 -0.48 -12.46 16 15 C 0.07 1.35 8.76 59.85 0.52 1.87 16 16 C 0.25 6.40 2.62 -69.08 -0.18 6.22 16 17 H 0.07 1.89 6.91 -51.93 -0.36 1.53 16 18 C -0.15 -3.47 8.96 37.16 0.33 -3.13 16 19 C -0.53 -14.14 8.37 -34.44 -0.29 -14.43 16 20 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 23 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.20 2.63 5.84 -52.49 -0.31 2.33 16 36 H 0.42 5.67 7.70 -40.82 -0.31 5.36 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.26 6.44 -51.93 -0.33 0.93 16 39 H 0.09 1.49 5.35 -51.94 -0.28 1.21 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 42 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -31.50 355.92 -5.57 -37.07 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.99 Total: 5.22 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.30 Total: 10.93 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.24 Total: -53.60 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.14 Total: -20.84 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.50 -5.57 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439326766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.455 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds