Wall clock time and date at job start Fri Apr 10 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 H 1.09001 * 109.46672 * 304.99447 * 3 2 1 5 5 C 1.52996 * 109.47108 * 185.00168 * 3 2 1 6 6 N 1.46500 * 109.47464 * 64.99812 * 3 2 1 7 7 C 1.46500 * 120.00014 * 59.99815 * 6 3 2 8 8 C 1.34772 * 119.99834 * 240.00267 * 6 3 2 9 9 O 1.21389 * 120.00402 * 356.43677 * 8 6 3 10 10 C 1.49246 * 120.00000 * 176.43546 * 8 6 3 11 11 O 1.21739 * 119.99735 * 5.92793 * 10 8 6 12 12 N 1.33171 * 120.00090 * 185.92534 * 10 8 6 13 13 C 1.33375 * 119.99988 * 180.02562 * 12 10 8 14 14 C 1.40856 * 126.35502 * 0.02562 * 13 12 10 15 15 C 1.35298 * 108.22715 * 180.02562 * 14 13 12 16 16 N 1.36224 * 108.88108 * 359.97438 * 15 14 13 17 17 C 1.46497 * 125.86100 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47264 * 84.97409 * 17 16 15 19 19 H 1.08007 * 119.99644 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00077 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00046 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46877 * 60.00311 * 22 20 18 24 24 H 1.48496 * 109.47013 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47093 * 300.00268 * 22 20 18 26 26 N 1.37286 * 126.35385 * 179.71624 * 13 12 10 27 27 H 0.96998 * 126.33837 * 0.02562 * 26 13 12 28 28 H 1.09000 * 109.47044 * 60.00213 * 1 2 3 29 29 H 1.08996 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47169 * 300.00700 * 1 2 3 31 31 H 1.08999 * 109.46771 * 119.99310 * 2 1 3 32 32 H 1.08997 * 109.47609 * 239.99604 * 2 1 3 33 33 H 1.09001 * 109.47534 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46764 * 299.99222 * 5 3 2 35 35 H 1.08993 * 109.47655 * 59.99251 * 5 3 2 36 36 H 1.08998 * 109.46854 * 95.99573 * 7 6 3 37 37 H 1.09001 * 109.47129 * 215.99053 * 7 6 3 38 38 H 1.08998 * 109.47198 * 335.99240 * 7 6 3 39 39 H 1.07999 * 125.88154 * 359.97438 * 14 13 12 40 40 H 1.07998 * 125.56031 * 180.02562 * 15 14 13 41 41 H 1.08994 * 109.47080 * 204.97986 * 17 16 15 42 42 H 1.09005 * 109.47129 * 324.97905 * 17 16 15 43 43 H 0.97003 * 119.99626 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 7 1.6524 2.0976 1.2518 7 6 2.1138 1.5591 2.5337 8 6 0.8714 3.1955 1.2240 9 8 0.5423 3.6796 0.1605 10 6 0.4110 3.8164 2.5007 11 8 0.8270 3.3980 3.5656 12 7 -0.4547 4.8279 2.4751 13 6 -0.8657 5.3830 3.6160 14 6 -0.4729 5.0085 4.9158 15 6 -1.1108 5.8112 5.7985 16 7 -1.8968 6.6858 5.1108 17 6 -2.7489 7.7210 5.7012 18 6 -1.9300 8.9598 5.9576 19 1 -0.8799 8.9747 5.7056 20 6 -2.5216 10.0745 6.5130 21 7 -3.8004 10.0565 6.8194 22 14 -1.5066 11.6104 6.8302 23 1 -0.9428 12.1045 5.5483 24 1 -2.3704 12.6596 7.4287 25 1 -0.3998 11.2877 7.7662 26 7 -1.7456 6.4294 3.7413 27 1 -2.1839 6.9018 3.0163 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.9283 2.4720 -0.1253 34 1 3.9994 0.9054 0.7161 35 1 3.8532 0.9569 -1.0570 36 1 3.0083 2.0945 2.8518 37 1 1.3312 1.6822 3.2823 38 1 2.3452 0.4999 2.4208 39 1 0.2178 4.2164 5.1648 40 1 -1.0123 5.7665 6.8731 41 1 -3.5613 7.9581 5.0143 42 1 -3.1628 7.3579 6.6420 43 1 -4.2167 10.8409 7.2098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444496125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:46 Heat of formation + Delta-G solvation = 22.864013 kcal Electronic energy + Delta-G solvation = -25132.094342 eV Core-core repulsion = 21408.114487 eV Total energy + Delta-G solvation = -3723.979855 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.48730 -41.40563 -39.39834 -37.75484 -36.04650 -34.83629 -33.79239 -32.60996 -32.37873 -30.92311 -28.77925 -27.84223 -26.43521 -24.91672 -24.31413 -22.94634 -22.77241 -21.12340 -20.02704 -18.94973 -18.51323 -18.13818 -17.51060 -17.02222 -16.88155 -16.68765 -16.25333 -15.77371 -15.52049 -15.20831 -14.79402 -14.61772 -14.48510 -14.41215 -14.22954 -14.06489 -13.84406 -13.73033 -13.24924 -13.11481 -13.02208 -12.73642 -12.66401 -12.34526 -12.15867 -12.10865 -12.08249 -11.91786 -11.56771 -11.28576 -10.78728 -10.58926 -10.51140 -9.80964 -9.58151 -8.69423 -8.33569 -6.57983 -0.14929 0.44112 0.99834 1.39469 1.42776 1.49174 1.76187 1.81572 2.29744 2.75189 2.94053 2.98282 3.31559 3.80377 3.84365 4.09043 4.17108 4.26125 4.34741 4.38016 4.47634 4.60077 4.66170 4.71638 4.77443 4.82258 4.89233 4.91608 5.00258 5.05536 5.07654 5.19051 5.24509 5.28322 5.39244 5.48986 5.64140 5.67161 5.86748 5.97661 6.18517 6.29381 6.51883 6.61069 7.00504 7.15946 7.65470 8.64398 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.002516 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.573587 B =11126.991614 C =11251.338046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.122 3.878 4 H 0.076 0.924 5 C -0.152 4.152 6 N -0.582 5.582 7 C 0.071 3.929 8 C 0.517 3.483 9 O -0.552 6.552 10 C 0.475 3.525 11 O -0.568 6.568 12 N -0.693 5.693 13 C 0.447 3.553 14 C -0.334 4.334 15 C 0.184 3.816 16 N -0.334 5.334 17 C 0.264 3.736 18 C -0.568 4.568 19 H 0.061 0.939 20 C 0.032 3.968 21 N -0.912 5.912 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.280 1.280 25 H -0.266 1.266 26 N -0.458 5.458 27 H 0.453 0.547 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.187 0.813 40 H 0.234 0.766 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.850 -16.645 -4.518 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.020 3.980 4 H 0.094 0.906 5 C -0.210 4.210 6 N -0.316 5.316 7 C -0.071 4.071 8 C 0.301 3.699 9 O -0.429 6.429 10 C 0.256 3.744 11 O -0.450 6.450 12 N -0.459 5.459 13 C 0.200 3.800 14 C -0.365 4.365 15 C 0.038 3.962 16 N -0.118 5.118 17 C 0.147 3.853 18 C -0.606 4.606 19 H 0.079 0.921 20 C -0.171 4.171 21 N -0.549 5.549 22 Si 0.787 3.213 23 H -0.203 1.203 24 H -0.205 1.205 25 H -0.191 1.191 26 N -0.179 5.179 27 H 0.301 0.699 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.204 0.796 40 H 0.250 0.750 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.215 -15.953 -5.186 18.679 hybrid contribution 0.106 1.348 0.239 1.373 sum 8.321 -14.605 -4.947 17.522 Atomic orbital electron populations 1.21718 0.96638 1.01891 1.00524 1.21884 0.95508 0.94316 1.04420 1.21446 0.96624 0.94228 0.85741 0.90596 1.22076 0.92888 1.02000 1.04031 1.47915 1.48011 1.26243 1.09453 1.22330 1.01457 0.99400 0.83894 1.20026 0.79239 0.81426 0.89244 1.90630 1.57143 1.62623 1.32552 1.20494 0.82071 0.83436 0.88396 1.90476 1.58919 1.63601 1.32039 1.68680 1.29502 1.22297 1.25468 1.19342 0.84454 0.84022 0.92226 1.22501 1.13377 1.10424 0.90187 1.23634 0.86327 0.85517 1.00760 1.48073 1.40086 1.30912 0.92696 1.19878 0.88210 0.82794 0.94445 1.21558 0.96793 0.98124 1.44137 0.92067 1.25571 0.95921 1.01335 0.94255 1.69948 1.11391 1.31778 1.41786 0.85528 0.78684 0.78519 0.78561 1.20341 1.20533 1.19073 1.44692 1.42748 1.31684 0.98778 0.69859 0.93895 0.90833 0.95266 0.89902 0.88250 0.93971 0.90709 0.89102 0.92734 0.89103 0.88987 0.79598 0.74986 0.93749 0.90247 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.80 71.98 0.71 -2.35 16 2 C -0.12 -2.00 5.36 30.59 0.16 -1.83 16 3 C 0.12 2.71 2.63 44.99 0.12 2.83 16 4 H 0.08 2.09 6.90 -2.39 -0.02 2.07 16 5 C -0.15 -2.53 9.19 71.98 0.66 -1.87 16 6 N -0.58 -16.43 2.21 -824.41 -1.83 -18.26 16 7 C 0.07 1.64 8.57 127.77 1.09 2.73 16 8 C 0.52 19.60 7.73 87.21 0.67 20.28 16 9 O -0.55 -24.09 16.25 -3.37 -0.05 -24.14 16 10 C 0.48 19.19 7.66 87.46 0.67 19.86 16 11 O -0.57 -21.52 10.05 -4.47 -0.04 -21.56 16 12 N -0.69 -29.45 10.34 -310.94 -3.21 -32.66 16 13 C 0.45 17.06 8.07 133.77 1.08 18.14 16 14 C -0.33 -11.13 9.52 22.23 0.21 -10.92 16 15 C 0.18 5.34 11.46 83.33 0.96 6.29 16 16 N -0.33 -11.35 3.63 -350.76 -1.27 -12.62 16 17 C 0.26 10.24 6.19 85.63 0.53 10.77 16 18 C -0.57 -25.62 9.39 25.60 0.24 -25.38 16 19 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 20 C 0.03 1.49 5.46 84.65 0.46 1.95 16 21 N -0.91 -44.72 13.29 21.45 0.28 -44.43 16 22 Si 0.96 38.08 29.54 68.60 2.03 40.10 16 23 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 26 N -0.46 -15.98 7.37 -54.85 -0.40 -16.39 16 27 H 0.45 14.49 8.96 -213.29 -1.91 12.58 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 0.73 7.75 -2.39 -0.02 0.71 16 31 H 0.08 1.11 6.50 -2.39 -0.02 1.09 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.02 7.67 -2.39 -0.02 1.00 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 2.52 5.35 -2.51 -0.01 2.50 16 38 H 0.09 1.47 6.36 -2.39 -0.02 1.45 16 39 H 0.19 6.23 5.77 -2.91 -0.02 6.22 16 40 H 0.23 4.60 8.06 -2.91 -0.02 4.57 16 41 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 43 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 Total: -1.00 -63.56 359.60 2.18 -61.37 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.88 Total: 28.09 kcal Atomic # 6 Polarization: 32.93 SS G_CDS: 7.57 Total: 40.50 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.43 Total: -124.36 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -0.10 Total: -45.71 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.10 kcal Total: -63.56 2.18 -61.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444496125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal (2) G-P(sol) polarization free energy of solvation -63.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds