Wall clock time and date at job start Fri Apr 10 2020 17:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 H 1.09004 * 109.99558 * 311.50437 * 3 2 1 5 5 C 1.54334 * 109.98811 * 190.47005 * 3 2 1 6 6 H 1.08990 * 110.51620 * 336.97710 * 5 3 2 7 7 N 1.46500 * 110.99964 * 100.12523 * 5 3 2 8 8 C 1.34779 * 119.99974 * 200.22947 * 7 5 3 9 9 O 1.21733 * 119.99676 * 0.02562 * 8 7 5 10 10 C 1.46379 * 119.99923 * 179.97438 * 8 7 5 11 11 N 1.38810 * 126.82863 * 0.02796 * 10 8 7 12 12 H 0.97003 * 126.53982 * 359.94260 * 11 10 8 13 13 C 1.34942 * 106.91282 * 179.97438 * 11 10 8 14 14 O 1.35217 * 125.49274 * 179.97438 * 13 11 10 15 15 N 1.31533 * 109.01555 * 0.02562 * 13 11 10 16 16 C 1.33219 * 109.76079 * 359.76128 * 15 13 11 17 17 C 1.50702 * 126.01803 * 180.25946 * 16 15 13 18 18 C 1.55153 * 103.01853 * 218.66133 * 5 3 2 19 19 C 1.54913 * 101.58371 * 35.30948 * 18 5 3 20 20 N 1.47023 * 109.88140 * 72.60261 * 3 2 1 21 21 C 1.36933 * 125.65060 * 298.38933 * 20 3 2 22 22 H 1.07999 * 119.99450 * 46.92747 * 21 20 3 23 23 C 1.38808 * 120.00266 * 226.92697 * 21 20 3 24 24 N 1.31615 * 119.99860 * 192.98878 * 23 21 20 25 25 Si 1.86801 * 119.99950 * 12.98663 * 23 21 20 26 26 H 1.48498 * 109.47048 * 267.29772 * 25 23 21 27 27 H 1.48498 * 109.47148 * 27.29592 * 25 23 21 28 28 H 1.48503 * 109.46870 * 147.29832 * 25 23 21 29 29 H 1.08997 * 109.47332 * 278.57757 * 1 2 3 30 30 H 1.09002 * 109.47252 * 38.58508 * 1 2 3 31 31 H 1.09004 * 109.46464 * 158.57866 * 1 2 3 32 32 H 1.08995 * 109.47450 * 239.99999 * 2 1 3 33 33 H 1.09006 * 109.46711 * 119.99224 * 2 1 3 34 34 H 0.97003 * 120.00498 * 20.23504 * 7 5 3 35 35 H 0.96700 * 114.00070 * 90.00027 * 14 13 11 36 36 H 1.09001 * 109.46681 * 270.14270 * 17 16 15 37 37 H 1.08994 * 109.47137 * 30.14576 * 17 16 15 38 38 H 1.09004 * 109.47086 * 150.14725 * 17 16 15 39 39 H 1.08996 * 111.00845 * 277.23300 * 18 5 3 40 40 H 1.09004 * 111.03752 * 153.39913 * 18 5 3 41 41 H 1.08990 * 110.36642 * 204.15055 * 19 18 5 42 42 H 1.09002 * 110.45698 * 81.87214 * 19 18 5 43 43 H 0.97002 * 120.00217 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5242 2.0202 -0.7671 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5083 0.0054 7 7 3.8462 1.7937 -1.6623 8 6 5.0407 1.4751 -2.1991 9 8 5.8820 0.9136 -1.5218 10 6 5.3259 1.8034 -3.5968 11 7 4.4761 2.4375 -4.4927 12 1 3.5753 2.7490 -4.3126 13 6 5.1422 2.5374 -5.6620 14 8 4.6598 3.0960 -6.7950 15 7 6.3358 2.0028 -5.5223 16 6 6.4840 1.5506 -4.2780 17 6 7.7113 0.8770 -3.7202 18 6 4.0623 2.5905 0.6787 19 6 3.1226 2.4175 1.8981 20 7 1.8169 2.0518 1.3194 21 6 0.5985 2.2426 1.9146 22 1 -0.1239 1.4401 1.9352 23 6 0.2921 3.4674 2.4914 24 7 -0.7564 3.5800 3.2790 25 14 1.3679 4.9559 2.1499 26 1 2.4093 5.0659 3.2027 27 1 2.0186 4.8026 0.8240 28 1 0.5307 6.1825 2.1516 29 1 -0.3634 0.1533 1.0161 30 1 -0.3634 0.8033 -0.6409 31 1 -0.3632 -0.9567 -0.3754 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.1757 2.2409 -2.2021 35 1 4.8406 4.0425 -6.8747 36 1 7.6374 -0.1993 -3.8761 37 1 8.5973 1.2577 -4.2282 38 1 7.7867 1.0852 -2.6529 39 1 3.9313 3.5708 0.2205 40 1 5.1027 2.4296 0.9613 41 1 3.0435 3.3529 2.4518 42 1 3.4853 1.6218 2.5487 43 1 -0.9704 4.4358 3.6824 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087613486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:24 Heat of formation + Delta-G solvation = 6.551229 kcal Electronic energy + Delta-G solvation = -26076.060688 eV Core-core repulsion = 22351.373458 eV Total energy + Delta-G solvation = -3724.687230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55056 -39.75394 -38.12425 -37.60833 -34.55719 -33.40912 -32.66087 -32.17876 -30.99182 -29.46935 -27.62364 -26.80261 -24.47468 -23.14375 -22.15659 -21.72326 -20.48161 -20.41048 -19.91972 -19.25689 -18.00785 -17.01698 -16.60207 -16.55889 -15.91249 -15.32562 -14.87933 -14.43633 -14.17771 -14.06507 -13.96927 -13.41075 -12.93288 -12.83220 -12.69396 -12.64802 -12.50868 -12.30699 -12.27439 -11.95678 -11.55774 -11.28246 -11.01073 -10.88937 -10.64135 -10.54132 -10.38210 -10.36985 -10.12165 -10.03047 -9.91435 -9.49327 -9.04128 -8.62888 -8.58923 -6.70612 -6.06717 -3.66203 0.89673 2.05175 2.38996 3.02522 3.14809 3.24448 3.36132 3.40967 3.50544 4.42502 4.45575 4.65970 4.83272 4.97562 5.05598 5.11179 5.27355 5.34521 5.49210 5.64267 5.73391 5.74641 5.77658 5.82353 5.86177 5.99676 6.10055 6.20204 6.26174 6.32152 6.32785 6.43811 6.50570 6.56312 6.67111 6.77081 6.95153 7.01202 7.15718 7.35194 7.53284 7.94707 8.06362 8.33786 8.78779 9.55884 10.18540 11.05676 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017978 B = 0.003726 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.120766 B = 7512.842037 C = 7633.486036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.042 0.958 5 C 0.136 3.864 6 H 0.100 0.900 7 N -0.714 5.714 8 C 0.596 3.404 9 O -0.520 6.520 10 C -0.080 4.080 11 N -0.555 5.555 12 H 0.423 0.577 13 C 0.410 3.590 14 O -0.441 6.441 15 N -0.489 5.489 16 C 0.112 3.888 17 C -0.078 4.078 18 C -0.146 4.146 19 C 0.118 3.882 20 N -0.598 5.598 21 C -0.254 4.254 22 H 0.091 0.909 23 C 0.042 3.958 24 N -0.902 5.902 25 Si 0.889 3.111 26 H -0.285 1.285 27 H -0.269 1.269 28 H -0.302 1.302 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.407 0.593 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.928 -1.092 -15.566 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C 0.048 3.952 4 H 0.060 0.940 5 C 0.032 3.968 6 H 0.118 0.882 7 N -0.364 5.364 8 C 0.382 3.618 9 O -0.396 6.396 10 C -0.194 4.194 11 N -0.173 5.173 12 H 0.263 0.737 13 C 0.108 3.892 14 O -0.243 6.243 15 N -0.220 5.220 16 C -0.022 4.022 17 C -0.136 4.136 18 C -0.185 4.185 19 C -0.006 4.006 20 N -0.324 5.324 21 C -0.382 4.382 22 H 0.108 0.892 23 C -0.160 4.160 24 N -0.542 5.542 25 Si 0.719 3.281 26 H -0.212 1.212 27 H -0.194 1.194 28 H -0.230 1.230 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.680 -1.939 -15.731 19.689 hybrid contribution -1.021 2.113 0.154 2.352 sum 10.659 0.174 -15.577 18.876 Atomic orbital electron populations 1.21848 0.95463 0.99205 1.03581 1.21918 0.96879 0.97308 1.00291 1.21302 0.90052 0.93498 0.90353 0.94012 1.22149 0.97161 0.99045 0.78492 0.88231 1.45956 1.15650 1.60952 1.13801 1.16633 0.82502 0.78962 0.83709 1.90839 1.45897 1.42235 1.60670 1.20913 0.93630 1.12737 0.92170 1.43733 1.16739 1.46713 1.10160 0.73731 1.20168 0.87464 1.00386 0.81135 1.84842 1.77651 1.29430 1.32336 1.70285 1.14512 1.17843 1.19363 1.20954 0.95070 0.98261 0.87964 1.20353 0.91678 0.99592 1.01980 1.23195 0.99540 0.98371 0.97399 1.21905 0.86470 0.98477 0.93765 1.44490 1.01616 1.72788 1.13552 1.18715 0.90915 0.96438 1.32151 0.89217 1.25732 0.95434 0.97558 0.97268 1.69774 1.27916 1.25435 1.31107 0.86679 0.79639 0.82691 0.79102 1.21232 1.19374 1.22986 0.90638 0.93250 0.94886 0.93707 0.91974 0.77365 0.73477 0.90394 0.90899 0.88779 0.91514 0.90921 0.93634 0.94736 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.12 37.16 0.34 -2.17 16 2 C -0.12 -2.10 5.40 -26.73 -0.14 -2.24 16 3 C 0.15 2.78 2.93 -66.94 -0.20 2.59 16 4 H 0.04 0.76 7.45 -51.93 -0.39 0.37 16 5 C 0.14 2.15 2.74 -66.09 -0.18 1.97 16 6 H 0.10 1.63 7.39 -51.93 -0.38 1.25 16 7 N -0.71 -9.30 5.20 -53.42 -0.28 -9.57 16 8 C 0.60 8.14 7.77 -12.98 -0.10 8.04 16 9 O -0.52 -8.40 14.52 5.16 0.07 -8.33 16 10 C -0.08 -0.96 7.08 -81.98 -0.58 -1.54 16 11 N -0.55 -5.12 6.12 -10.90 -0.07 -5.19 16 12 H 0.42 2.71 8.32 -40.82 -0.34 2.37 16 13 C 0.41 4.18 9.43 -89.60 -0.84 3.34 16 14 O -0.44 -3.28 13.62 -17.35 -0.24 -3.52 16 15 N -0.49 -6.14 11.22 -10.83 -0.12 -6.26 16 16 C 0.11 1.40 7.14 -82.54 -0.59 0.81 16 17 C -0.08 -0.85 9.87 36.01 0.36 -0.49 16 18 C -0.15 -2.50 6.77 -24.58 -0.17 -2.66 16 19 C 0.12 2.42 6.25 -2.53 -0.02 2.40 16 20 N -0.60 -13.21 2.47 -162.56 -0.40 -13.61 16 21 C -0.25 -6.64 9.56 -15.06 -0.14 -6.79 16 22 H 0.09 2.48 5.24 -52.49 -0.27 2.21 16 23 C 0.04 1.15 5.48 -17.43 -0.10 1.05 16 24 N -0.90 -26.45 13.97 55.49 0.78 -25.68 16 25 Si 0.89 21.50 25.12 -169.99 -4.27 17.23 16 26 H -0.28 -6.85 6.83 56.52 0.39 -6.46 16 27 H -0.27 -6.24 6.93 56.52 0.39 -5.84 16 28 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 29 H 0.07 1.53 5.54 -51.93 -0.29 1.24 16 30 H 0.05 0.86 7.79 -51.93 -0.40 0.46 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.39 4.22 7.57 -40.82 -0.31 3.91 16 35 H 0.41 0.86 9.06 45.56 0.41 1.27 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.09 6.47 -51.93 -0.34 0.76 16 39 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.01 4.20 -51.93 -0.22 0.79 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -32.96 344.93 -6.75 -39.71 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.06 Total: 5.70 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.36 Total: 4.32 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: -0.09 Total: -60.31 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.16 Total: -11.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.27 Total: 17.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.96 -6.75 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087613486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.265 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds