Wall clock time and date at job start Fri Apr 10 2020 17:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46756 * 2 1 4 4 N 1.30448 * 125.98762 * 270.03843 * 3 2 1 5 5 N 1.39931 * 108.89829 * 179.97438 * 4 3 2 6 6 H 0.96998 * 125.75518 * 180.02562 * 5 4 3 7 7 C 1.34266 * 108.49024 * 359.74964 * 5 4 3 8 8 C 1.38046 * 107.41382 * 0.39763 * 7 5 4 9 9 C 1.47426 * 126.41052 * 179.87075 * 8 7 5 10 10 O 1.21602 * 120.00001 * 179.68664 * 9 8 7 11 11 N 1.34777 * 120.00260 * 359.68949 * 9 8 7 12 12 C 1.46496 * 120.00299 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46080 * 35.02914 * 12 11 9 14 14 C 1.53040 * 109.45014 * 275.05837 * 12 11 9 15 15 C 1.53188 * 109.31207 * 301.35075 * 14 12 11 16 16 N 1.46931 * 108.77610 * 305.36319 * 15 14 12 17 17 C 1.36931 * 120.62988 * 233.58339 * 16 15 14 18 18 H 1.08002 * 120.00177 * 27.69097 * 17 16 15 19 19 C 1.38811 * 120.00200 * 207.68253 * 17 16 15 20 20 N 1.31625 * 119.99867 * 17.37448 * 19 17 16 21 21 Si 1.86802 * 120.00239 * 197.36751 * 19 17 16 22 22 H 1.48498 * 109.46798 * 60.00884 * 21 19 17 23 23 H 1.48505 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47420 * 300.00250 * 21 19 17 25 25 C 1.46924 * 118.73662 * 53.61218 * 16 15 14 26 26 C 1.53046 * 109.46107 * 154.99549 * 12 11 9 27 27 H 1.08994 * 109.49912 * 178.62559 * 26 12 11 28 28 O 1.42903 * 109.49742 * 298.69114 * 26 12 11 29 29 H 1.08996 * 109.46447 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46699 * 299.99963 * 1 2 3 31 31 H 1.08995 * 109.46940 * 60.00179 * 1 2 3 32 32 H 1.08990 * 109.47185 * 239.99584 * 2 1 3 33 33 H 1.08999 * 109.47083 * 119.99341 * 2 1 3 34 34 H 1.07997 * 126.28633 * 180.24306 * 7 5 4 35 35 H 0.97005 * 120.00074 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.49461 * 61.30166 * 14 12 11 37 37 H 1.08998 * 109.49707 * 181.40285 * 14 12 11 38 38 H 1.09001 * 109.58622 * 65.15104 * 15 14 12 39 39 H 1.09005 * 109.58929 * 185.57566 * 15 14 12 40 40 H 0.96995 * 120.00276 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.58587 * 186.60371 * 25 16 15 42 42 H 1.08998 * 109.58806 * 66.17685 * 25 16 15 43 43 H 0.96703 * 113.99300 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2871 2.1438 -1.0555 5 7 2.7326 3.4050 -0.6443 6 1 2.9894 4.1341 -1.2302 7 6 2.7388 3.4376 0.6979 8 6 2.3092 2.2036 1.1432 9 6 2.1610 1.7833 2.5485 10 8 1.7653 0.6635 2.8097 11 7 2.4639 2.6402 3.5437 12 6 2.3161 2.2227 4.9401 13 1 2.5681 1.1663 5.0320 14 6 0.8691 2.4425 5.3872 15 6 0.5077 3.9222 5.2242 16 7 1.4938 4.7329 5.9518 17 6 1.0903 5.6547 6.8804 18 1 0.1614 5.5138 7.4130 19 6 1.8753 6.7703 7.1375 20 7 2.8076 7.1305 6.2811 21 14 1.6085 7.7605 8.6989 22 1 1.8262 6.8887 9.8811 23 1 2.5671 8.8941 8.7361 24 1 0.2199 8.2863 8.7204 25 6 2.9209 4.5359 5.6634 26 6 3.2553 3.0493 5.8216 27 1 3.1282 2.7562 6.8636 28 8 4.6084 2.8198 5.4232 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.0291 4.2746 1.3156 35 1 2.7799 3.5333 3.3354 36 1 0.2028 1.8356 4.7743 37 1 0.7640 2.1556 6.4335 38 1 0.5244 4.1882 4.1673 39 1 -0.4866 4.1027 5.6328 40 1 3.3559 7.9102 6.4605 41 1 3.5190 5.1213 6.3619 42 1 3.1344 4.8519 4.6423 43 1 5.2597 3.3133 5.9403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090380694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:03 Heat of formation + Delta-G solvation = 1.721169 kcal Electronic energy + Delta-G solvation = -26516.713535 eV Core-core repulsion = 22791.816857 eV Total energy + Delta-G solvation = -3724.896677 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41366 -39.44430 -37.59871 -35.29529 -34.42018 -33.80387 -32.09928 -30.56391 -30.29795 -29.27244 -28.70930 -25.38188 -24.03347 -23.30206 -22.28206 -21.80192 -20.54146 -19.47612 -18.66267 -18.36042 -16.95445 -16.58970 -16.32423 -15.30933 -15.06702 -14.96812 -14.70613 -14.21950 -14.12043 -13.96495 -13.74660 -13.62545 -13.27014 -12.92304 -12.69989 -12.30028 -12.24457 -11.84441 -11.68618 -11.46883 -11.19421 -11.08242 -10.99593 -10.84483 -10.73936 -10.46403 -10.24182 -10.01920 -9.66756 -9.57325 -9.45220 -9.32154 -8.85624 -8.63633 -8.44388 -6.81748 -5.93206 -3.35709 1.53990 2.21007 2.65786 3.30379 3.36473 3.38120 3.66033 3.74389 4.37429 4.47069 4.61392 4.66746 5.09654 5.22387 5.29865 5.38592 5.41199 5.46060 5.48806 5.62701 5.67707 5.75104 5.84210 5.93684 5.98685 6.03807 6.19198 6.26726 6.29742 6.44805 6.48564 6.51615 6.71719 6.80769 6.99539 7.03084 7.06556 7.36784 7.50400 7.67280 8.00950 8.08523 8.31024 8.68465 9.06114 9.69047 10.24724 11.14961 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003814 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.054200 B = 7338.694200 C = 7612.159799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.137 3.863 4 N -0.304 5.304 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.107 3.893 8 C -0.281 4.281 9 C 0.592 3.408 10 O -0.551 6.551 11 N -0.703 5.703 12 C 0.168 3.832 13 H 0.079 0.921 14 C -0.144 4.144 15 C 0.146 3.854 16 N -0.588 5.588 17 C -0.255 4.255 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.147 3.853 26 C 0.066 3.934 27 H 0.061 0.939 28 O -0.572 6.572 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.187 0.813 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.255 0.745 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.191 -7.676 -9.714 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.031 4.031 4 N -0.127 5.127 5 N -0.168 5.168 6 H 0.287 0.713 7 C -0.045 4.045 8 C -0.296 4.296 9 C 0.379 3.621 10 O -0.431 6.431 11 N -0.354 5.354 12 C 0.063 3.937 13 H 0.098 0.902 14 C -0.185 4.185 15 C 0.020 3.980 16 N -0.312 5.312 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.020 3.980 26 C 0.005 3.995 27 H 0.079 0.921 28 O -0.377 6.377 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.204 0.796 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.743 -8.675 -11.199 14.186 hybrid contribution 0.571 2.135 1.717 2.798 sum 1.314 -6.541 -9.482 11.594 Atomic orbital electron populations 1.21610 0.94050 1.01909 1.02035 1.20106 0.96481 0.88121 1.03963 1.22448 0.95044 0.96920 0.88737 1.77105 1.22204 0.90791 1.22560 1.46070 1.51999 1.13250 1.05488 0.71291 1.23264 0.96732 0.98979 0.85568 1.20376 1.19012 0.95268 0.94920 1.17176 0.76925 0.84560 0.83409 1.90692 1.47830 1.20272 1.84278 1.45811 1.67066 1.16838 1.05697 1.20771 0.94553 0.98663 0.79699 0.90250 1.22396 0.95123 0.99688 1.01245 1.20923 0.93420 0.88760 0.94942 1.43959 0.99768 1.42477 1.44980 1.19177 1.07204 0.99140 1.12877 0.91458 1.25025 0.99687 0.96305 0.98455 1.69998 1.24376 1.26469 1.34000 0.86355 0.77579 0.79349 0.83427 1.20957 1.21620 1.20813 1.21382 0.86817 0.89962 0.99804 1.22949 0.80865 0.99007 0.96664 0.92082 1.86427 1.16343 1.71484 1.63420 0.92039 0.91996 0.93126 0.90900 0.87995 0.79628 0.76467 0.91588 0.91236 0.96198 0.92554 0.93515 0.88995 0.95967 0.77846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.90 37.16 0.37 -1.25 16 2 C -0.05 -0.60 5.97 -27.88 -0.17 -0.77 16 3 C 0.14 1.95 6.52 -82.02 -0.53 1.42 16 4 N -0.30 -4.12 12.63 33.89 0.43 -3.69 16 5 N -0.46 -4.94 7.29 30.85 0.22 -4.72 16 6 H 0.44 3.06 8.96 -182.73 -1.64 1.42 16 7 C 0.11 1.25 11.52 -16.56 -0.19 1.06 16 8 C -0.28 -4.11 6.13 -105.07 -0.64 -4.75 16 9 C 0.59 9.92 7.78 -12.52 -0.10 9.82 16 10 O -0.55 -10.38 14.58 5.28 0.08 -10.30 16 11 N -0.70 -11.56 4.14 -54.84 -0.23 -11.79 16 12 C 0.17 2.94 2.47 -67.89 -0.17 2.77 16 13 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 14 C -0.14 -2.53 5.77 -26.61 -0.15 -2.68 16 15 C 0.15 2.89 6.26 -3.71 -0.02 2.87 16 16 N -0.59 -13.45 2.99 -172.32 -0.52 -13.96 16 17 C -0.25 -6.52 9.59 -15.06 -0.14 -6.67 16 18 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -24.18 11.19 55.49 0.62 -23.56 16 21 Si 0.90 20.52 29.59 -169.99 -5.03 15.49 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.15 3.10 4.64 -3.71 -0.02 3.08 16 26 C 0.07 1.18 3.36 -26.61 -0.09 1.09 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 O -0.57 -9.44 13.21 -35.23 -0.47 -9.91 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.43 6.55 -51.93 -0.34 1.09 16 34 H 0.19 1.70 7.46 -52.49 -0.39 1.31 16 35 H 0.40 6.36 5.79 -40.82 -0.24 6.13 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 39 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 40 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.09 2.18 6.04 -51.93 -0.31 1.87 16 42 H 0.02 0.48 6.64 -51.93 -0.34 0.14 16 43 H 0.37 4.92 9.08 45.56 0.41 5.33 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.31 348.69 -8.14 -39.46 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.57 Total: 11.72 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.95 Total: 6.01 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.53 Total: -57.72 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.39 Total: -20.21 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.31 -8.14 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090380694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.180 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds