Wall clock time and date at job start Fri Apr 10 2020 17:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46756 * 2 1 4 4 N 1.30448 * 125.98762 * 270.03843 * 3 2 1 5 5 N 1.39931 * 108.89829 * 179.97438 * 4 3 2 6 6 H 0.96998 * 125.75518 * 180.02562 * 5 4 3 7 7 C 1.34266 * 108.49024 * 359.74964 * 5 4 3 8 8 C 1.38046 * 107.41382 * 0.39763 * 7 5 4 9 9 C 1.47426 * 126.41052 * 179.87075 * 8 7 5 10 10 O 1.21602 * 120.00001 * 179.68664 * 9 8 7 11 11 N 1.34777 * 120.00260 * 359.68949 * 9 8 7 12 12 C 1.46496 * 120.00299 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46080 * 35.02914 * 12 11 9 14 14 C 1.53040 * 109.45014 * 275.05837 * 12 11 9 15 15 C 1.53188 * 109.31207 * 301.35075 * 14 12 11 16 16 N 1.46931 * 108.77610 * 305.36319 * 15 14 12 17 17 C 1.36931 * 120.62988 * 233.58339 * 16 15 14 18 18 H 1.08002 * 120.00177 * 27.69097 * 17 16 15 19 19 C 1.38811 * 120.00200 * 207.68253 * 17 16 15 20 20 N 1.31625 * 119.99867 * 17.37448 * 19 17 16 21 21 Si 1.86802 * 120.00239 * 197.36751 * 19 17 16 22 22 H 1.48498 * 109.46798 * 60.00884 * 21 19 17 23 23 H 1.48505 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48492 * 109.47420 * 300.00250 * 21 19 17 25 25 C 1.46924 * 118.73662 * 53.61218 * 16 15 14 26 26 C 1.53046 * 109.46107 * 154.99549 * 12 11 9 27 27 H 1.08994 * 109.49912 * 178.62559 * 26 12 11 28 28 O 1.42903 * 109.49742 * 298.69114 * 26 12 11 29 29 H 1.08996 * 109.46447 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46699 * 299.99963 * 1 2 3 31 31 H 1.08995 * 109.46940 * 60.00179 * 1 2 3 32 32 H 1.08990 * 109.47185 * 239.99584 * 2 1 3 33 33 H 1.08999 * 109.47083 * 119.99341 * 2 1 3 34 34 H 1.07997 * 126.28633 * 180.24306 * 7 5 4 35 35 H 0.97005 * 120.00074 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.49461 * 61.30166 * 14 12 11 37 37 H 1.08998 * 109.49707 * 181.40285 * 14 12 11 38 38 H 1.09001 * 109.58622 * 65.15104 * 15 14 12 39 39 H 1.09005 * 109.58929 * 185.57566 * 15 14 12 40 40 H 0.96995 * 120.00276 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.58587 * 186.60371 * 25 16 15 42 42 H 1.08998 * 109.58806 * 66.17685 * 25 16 15 43 43 H 0.96703 * 113.99300 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2871 2.1438 -1.0555 5 7 2.7326 3.4050 -0.6443 6 1 2.9894 4.1341 -1.2302 7 6 2.7388 3.4376 0.6979 8 6 2.3092 2.2036 1.1432 9 6 2.1610 1.7833 2.5485 10 8 1.7653 0.6635 2.8097 11 7 2.4639 2.6402 3.5437 12 6 2.3161 2.2227 4.9401 13 1 2.5681 1.1663 5.0320 14 6 0.8691 2.4425 5.3872 15 6 0.5077 3.9222 5.2242 16 7 1.4938 4.7329 5.9518 17 6 1.0903 5.6547 6.8804 18 1 0.1614 5.5138 7.4130 19 6 1.8753 6.7703 7.1375 20 7 2.8076 7.1305 6.2811 21 14 1.6085 7.7605 8.6989 22 1 1.8262 6.8887 9.8811 23 1 2.5671 8.8941 8.7361 24 1 0.2199 8.2863 8.7204 25 6 2.9209 4.5359 5.6634 26 6 3.2553 3.0493 5.8216 27 1 3.1282 2.7562 6.8636 28 8 4.6084 2.8198 5.4232 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.0291 4.2746 1.3156 35 1 2.7799 3.5333 3.3354 36 1 0.2028 1.8356 4.7743 37 1 0.7640 2.1556 6.4335 38 1 0.5244 4.1882 4.1673 39 1 -0.4866 4.1027 5.6328 40 1 3.3559 7.9102 6.4605 41 1 3.5190 5.1213 6.3619 42 1 3.1344 4.8519 4.6423 43 1 5.2597 3.3133 5.9403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090380694.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:02 Heat of formation + Delta-G solvation = -21.671278 kcal Electronic energy + Delta-G solvation = -26517.727907 eV Core-core repulsion = 22791.816857 eV Total energy + Delta-G solvation = -3725.911050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43761 -40.83141 -39.02692 -36.81015 -35.71748 -35.04119 -33.71011 -31.97250 -31.27079 -30.76080 -30.16172 -27.15845 -25.01695 -24.55261 -23.79834 -23.40125 -21.74459 -20.54355 -20.12650 -19.47722 -18.66728 -18.03163 -17.57024 -16.76657 -16.55439 -16.25871 -15.85776 -15.66536 -15.52562 -15.30845 -15.00382 -14.93951 -14.78310 -14.27230 -13.92274 -13.78857 -13.47998 -13.25684 -13.21252 -12.83196 -12.64174 -12.60911 -12.41775 -12.19168 -12.13552 -11.93317 -11.79301 -11.75756 -11.20831 -10.92723 -10.71860 -10.54368 -10.53747 -10.04687 -9.69179 -8.67003 -7.87423 -5.31686 0.54006 1.11428 1.50369 1.52634 1.58313 1.79172 2.37532 2.51755 2.52702 3.19020 3.30345 3.47055 3.70870 3.75070 3.98277 4.16651 4.21295 4.27699 4.32066 4.42053 4.43622 4.50022 4.51918 4.57722 4.72122 4.77856 4.98367 5.04152 5.07145 5.13889 5.20674 5.21785 5.32339 5.37512 5.47618 5.62871 5.66000 5.68962 6.24237 6.37871 6.49668 6.73976 6.87566 7.15964 7.39809 7.83818 8.35220 9.17836 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003814 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.054200 B = 7338.694200 C = 7612.159799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C 0.126 3.874 4 N -0.318 5.318 5 N -0.446 5.446 6 H 0.460 0.540 7 C 0.128 3.872 8 C -0.314 4.314 9 C 0.592 3.408 10 O -0.577 6.577 11 N -0.700 5.700 12 C 0.171 3.829 13 H 0.074 0.926 14 C -0.131 4.131 15 C 0.148 3.852 16 N -0.601 5.601 17 C -0.266 4.266 18 H 0.065 0.935 19 C -0.039 4.039 20 N -0.926 5.926 21 Si 0.960 3.040 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.280 1.280 25 C 0.158 3.842 26 C 0.083 3.917 27 H 0.060 0.940 28 O -0.573 6.573 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.213 0.787 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.019 0.981 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -7.611 -10.251 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.042 4.042 4 N -0.141 5.141 5 N -0.152 5.152 6 H 0.308 0.692 7 C -0.026 4.026 8 C -0.329 4.329 9 C 0.381 3.619 10 O -0.459 6.459 11 N -0.351 5.351 12 C 0.066 3.934 13 H 0.092 0.908 14 C -0.171 4.171 15 C 0.022 3.978 16 N -0.326 5.326 17 C -0.396 4.396 18 H 0.083 0.917 19 C -0.235 4.235 20 N -0.572 5.572 21 Si 0.789 3.211 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.032 3.968 26 C 0.022 3.978 27 H 0.078 0.922 28 O -0.379 6.379 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.229 0.771 35 H 0.239 0.761 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.903 -8.605 -11.766 14.605 hybrid contribution 0.544 2.140 1.823 2.863 sum 1.447 -6.465 -9.944 11.948 Atomic orbital electron populations 1.21553 0.93420 1.02819 1.01116 1.20116 0.96987 0.87688 1.03892 1.22669 0.95142 0.97564 0.88795 1.77062 1.22762 0.91764 1.22531 1.46105 1.50545 1.12988 1.05561 0.69165 1.23571 0.94577 0.98521 0.85970 1.20329 1.21746 0.96913 0.93902 1.17454 0.76183 0.84108 0.84188 1.90672 1.49065 1.21331 1.84794 1.45733 1.67179 1.16939 1.05239 1.20663 0.94247 0.98169 0.80317 0.90784 1.22246 0.95339 0.97930 1.01626 1.20956 0.92745 0.89635 0.94425 1.44143 1.00926 1.42435 1.45079 1.19434 1.07159 0.99645 1.13365 0.91749 1.25623 0.99870 0.97327 1.00707 1.70113 1.25117 1.26776 1.35177 0.85458 0.77193 0.77896 0.80556 1.20619 1.22046 1.20623 1.21207 0.85643 0.91511 0.98442 1.22607 0.81754 0.96662 0.96736 0.92225 1.86407 1.15938 1.71713 1.63882 0.90272 0.94130 0.92640 0.89300 0.89611 0.77071 0.76130 0.91063 0.90845 0.96272 0.92797 0.93975 0.91710 0.96649 0.76032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.90 71.99 0.71 -2.27 16 2 C -0.05 -1.18 5.97 29.85 0.18 -1.00 16 3 C 0.13 3.48 6.52 43.51 0.28 3.76 16 4 N -0.32 -8.09 12.63 -46.68 -0.59 -8.68 16 5 N -0.45 -8.48 7.29 -56.31 -0.41 -8.89 16 6 H 0.46 5.10 8.96 -213.43 -1.91 3.19 16 7 C 0.13 2.71 11.52 84.28 0.97 3.68 16 8 C -0.31 -8.86 6.13 -20.15 -0.12 -8.98 16 9 C 0.59 19.48 7.78 86.66 0.67 20.16 16 10 O -0.58 -21.71 14.58 -4.04 -0.06 -21.77 16 11 N -0.70 -22.36 4.14 -445.68 -1.85 -24.21 16 12 C 0.17 5.84 2.47 45.02 0.11 5.95 16 13 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 14 C -0.13 -4.48 5.77 30.67 0.18 -4.31 16 15 C 0.15 5.77 6.26 86.36 0.54 6.31 16 16 N -0.60 -27.28 2.99 -699.09 -2.09 -29.37 16 17 C -0.27 -13.56 9.59 84.03 0.81 -12.75 16 18 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 19 C -0.04 -2.01 4.91 84.86 0.42 -1.59 16 20 N -0.93 -49.54 11.19 21.65 0.24 -49.30 16 21 Si 0.96 41.98 29.59 68.60 2.03 44.01 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 C 0.16 6.62 4.64 86.36 0.40 7.02 16 26 C 0.08 2.91 3.36 30.67 0.10 3.01 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 O -0.57 -18.07 13.21 -148.98 -1.97 -20.03 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.41 6.55 -2.39 -0.02 2.40 16 34 H 0.21 3.28 7.46 -2.91 -0.02 3.26 16 35 H 0.40 12.32 5.79 -92.70 -0.54 11.78 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.02 0.76 7.74 -2.39 -0.02 0.74 16 39 H 0.05 2.10 7.93 -2.38 -0.02 2.08 16 40 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 41 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 42 H 0.02 0.67 6.64 -2.39 -0.02 0.65 16 43 H 0.39 9.65 9.08 -74.06 -0.67 8.98 16 Total: -1.00 -65.83 348.69 -1.50 -67.33 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -2.05 Total: 31.91 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 5.25 Total: 18.99 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.70 Total: -120.45 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.03 Total: -41.80 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.83 -1.50 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090380694.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.662 kcal (2) G-P(sol) polarization free energy of solvation -65.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds