Wall clock time and date at job start Fri Apr 10 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47054 * 2 1 4 4 N 1.30445 * 125.99151 * 270.17477 * 3 2 1 5 5 N 1.39932 * 108.89442 * 180.26354 * 4 3 2 6 6 H 0.97000 * 125.75183 * 179.73878 * 5 4 3 7 7 C 1.34260 * 108.49375 * 359.73282 * 5 4 3 8 8 C 1.38043 * 107.41501 * 359.97438 * 7 5 4 9 9 C 1.47434 * 126.41073 * 179.97438 * 8 7 5 10 10 O 1.21601 * 119.99644 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00199 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99963 * 179.72558 * 11 9 8 13 13 H 1.08998 * 109.46060 * 325.29747 * 12 11 9 14 14 C 1.53034 * 109.46026 * 85.27632 * 12 11 9 15 15 C 1.53198 * 109.31368 * 58.65703 * 14 12 11 16 16 N 1.46927 * 108.77462 * 54.63110 * 15 14 12 17 17 C 1.36939 * 120.63089 * 126.36996 * 16 15 14 18 18 H 1.07995 * 120.00478 * 207.68438 * 17 16 15 19 19 C 1.38818 * 119.99808 * 27.68148 * 17 16 15 20 20 N 1.31625 * 119.99652 * 17.37664 * 19 17 16 21 21 Si 1.86799 * 120.00153 * 197.37128 * 19 17 16 22 22 H 1.48500 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46965 * 120.00139 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00419 * 21 19 17 25 25 C 1.46919 * 118.74316 * 306.39545 * 16 15 14 26 26 C 1.53041 * 109.45909 * 205.34677 * 12 11 9 27 27 H 1.08999 * 109.49751 * 181.39392 * 26 12 11 28 28 O 1.42902 * 109.49852 * 61.29391 * 26 12 11 29 29 H 1.09002 * 109.47366 * 299.99427 * 1 2 3 30 30 H 1.08999 * 109.47640 * 59.99898 * 1 2 3 31 31 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47366 * 240.00572 * 2 1 3 33 33 H 1.08999 * 109.47640 * 120.00102 * 2 1 3 34 34 H 1.07999 * 126.29180 * 180.02562 * 7 5 4 35 35 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.49602 * 178.60568 * 14 12 11 37 37 H 1.08997 * 109.49753 * 298.70417 * 14 12 11 38 38 H 1.08999 * 109.58770 * 174.41766 * 15 14 12 39 39 H 1.08998 * 109.58623 * 294.70731 * 15 14 12 40 40 H 0.96996 * 119.99366 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58950 * 173.39382 * 25 16 15 42 42 H 1.08998 * 109.58571 * 293.82372 * 25 16 15 43 43 H 0.96702 * 113.99627 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2848 2.1447 -1.0554 5 7 2.7375 3.4032 -0.6441 6 1 2.9981 4.1311 -1.2299 7 6 2.7502 3.4335 0.6981 8 6 2.3084 2.2038 1.1433 9 6 2.1597 1.7835 2.5486 10 8 1.7583 0.6658 2.8097 11 7 2.4686 2.6382 3.5438 12 6 2.3151 2.2226 4.9403 13 1 1.4524 1.5625 5.0300 14 6 3.5745 1.4803 5.3927 15 6 4.7895 2.3998 5.2331 16 7 4.5336 3.6517 5.9582 17 6 5.4245 4.1128 6.8904 18 1 5.0802 4.7276 7.7088 19 6 6.7703 3.7898 6.7834 20 7 7.2520 3.3467 5.6413 21 14 7.8978 3.9840 8.2601 22 1 7.1169 4.4950 9.4152 23 1 8.4900 2.6671 8.6072 24 1 8.9825 4.9436 7.9318 25 6 3.3034 4.3994 5.6648 26 6 2.1051 3.4575 5.8195 27 1 2.0155 3.1511 6.8617 28 8 0.9122 4.1331 5.4161 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.0501 4.2670 1.3159 35 1 2.7884 3.5300 3.3355 36 1 3.4711 1.1925 6.4389 37 1 3.7105 0.5883 4.7812 38 1 5.6731 1.9127 5.6455 39 1 4.9497 2.6135 4.1763 40 1 8.1924 3.1214 5.5665 41 1 3.2064 5.2317 6.3619 42 1 3.3408 4.7781 4.6434 43 1 0.7162 4.9271 5.9321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090380695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:06 Heat of formation + Delta-G solvation = 2.735979 kcal Electronic energy + Delta-G solvation = -26485.830412 eV Core-core repulsion = 22760.977741 eV Total energy + Delta-G solvation = -3724.852672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39736 -39.45543 -37.63743 -35.44055 -34.39912 -33.75778 -31.89330 -30.71976 -30.28640 -29.56601 -28.43927 -25.37042 -24.01878 -23.28100 -22.26499 -21.86537 -20.54922 -19.46708 -18.65992 -18.37538 -17.07175 -16.59787 -16.26798 -15.29376 -15.08953 -14.95333 -14.64620 -14.24797 -14.21976 -13.95862 -13.85753 -13.57240 -13.21839 -12.92344 -12.67000 -12.29473 -12.25316 -11.98245 -11.66438 -11.45657 -11.22214 -11.12816 -10.92568 -10.73204 -10.65119 -10.37772 -10.20372 -9.97494 -9.82711 -9.56285 -9.43097 -9.39690 -8.83182 -8.56179 -8.43568 -6.80387 -5.89803 -3.33774 1.55454 2.23373 2.66933 3.30789 3.39447 3.40756 3.66031 3.77447 4.34981 4.47911 4.53017 4.66590 5.10570 5.25895 5.28469 5.34568 5.43397 5.45923 5.48557 5.58625 5.61589 5.68247 5.72825 5.99356 6.00381 6.08672 6.20914 6.28355 6.29781 6.43845 6.50267 6.58493 6.63081 6.71870 7.00498 7.06650 7.27483 7.51944 7.58699 7.69594 7.91129 8.00964 8.33003 8.70493 9.08794 9.71205 10.26300 11.18141 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.003930 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.923063 B = 7122.846510 C = 7577.237231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 C 0.137 3.863 4 N -0.304 5.304 5 N -0.464 5.464 6 H 0.442 0.558 7 C 0.107 3.893 8 C -0.279 4.279 9 C 0.593 3.407 10 O -0.550 6.550 11 N -0.703 5.703 12 C 0.169 3.831 13 H 0.080 0.920 14 C -0.153 4.153 15 C 0.172 3.828 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.119 3.881 26 C 0.075 3.925 27 H 0.066 0.934 28 O -0.570 6.570 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.672 0.577 -8.527 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.031 4.031 4 N -0.126 5.126 5 N -0.168 5.168 6 H 0.287 0.713 7 C -0.046 4.046 8 C -0.294 4.294 9 C 0.380 3.620 10 O -0.429 6.429 11 N -0.354 5.354 12 C 0.064 3.936 13 H 0.098 0.902 14 C -0.193 4.193 15 C 0.047 3.953 16 N -0.311 5.311 17 C -0.388 4.388 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.217 1.217 25 C -0.008 4.008 26 C 0.014 3.986 27 H 0.084 0.916 28 O -0.375 6.375 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.791 -0.712 -10.056 14.767 hybrid contribution 1.196 1.667 1.627 2.618 sum -9.594 0.954 -8.429 12.807 Atomic orbital electron populations 1.21606 0.94127 1.01892 1.01908 1.20113 0.96399 0.88137 1.04090 1.22448 0.95054 0.96864 0.88728 1.77106 1.22159 0.90811 1.22544 1.46057 1.51827 1.13494 1.05457 0.71333 1.23205 0.96766 0.99074 0.85566 1.20378 1.18736 0.95360 0.94926 1.17153 0.76824 0.84624 0.83382 1.90696 1.47749 1.20189 1.84245 1.45748 1.66925 1.16969 1.05731 1.20789 0.98740 0.94567 0.79512 0.90234 1.22583 0.96553 0.99311 1.00877 1.20788 0.94515 0.85131 0.94915 1.44019 1.19602 1.21422 1.46058 1.19199 0.87320 1.30609 1.01715 0.91556 1.25041 0.96693 1.01057 0.96497 1.70043 1.13346 1.48262 1.22582 0.86229 0.80654 0.77467 0.82420 1.20215 1.21435 1.21705 1.21524 0.87405 0.93686 0.98183 1.22762 0.85094 0.93425 0.97316 0.91617 1.86496 1.43879 1.44013 1.63064 0.92078 0.93179 0.92044 0.90835 0.87915 0.79783 0.76771 0.91581 0.91714 0.89309 0.96046 0.93556 0.92349 0.96209 0.78107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.05 -0.63 5.97 -27.88 -0.17 -0.80 16 3 C 0.14 2.01 6.52 -82.02 -0.53 1.47 16 4 N -0.30 -4.19 12.63 33.90 0.43 -3.76 16 5 N -0.46 -4.99 7.29 30.85 0.22 -4.77 16 6 H 0.44 3.06 8.96 -182.72 -1.64 1.42 16 7 C 0.11 1.24 11.52 -16.56 -0.19 1.05 16 8 C -0.28 -4.17 6.13 -105.07 -0.64 -4.81 16 9 C 0.59 10.16 7.78 -12.52 -0.10 10.06 16 10 O -0.55 -10.64 14.58 5.28 0.08 -10.56 16 11 N -0.70 -11.57 4.14 -54.84 -0.23 -11.80 16 12 C 0.17 2.95 2.47 -67.89 -0.17 2.79 16 13 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 14 C -0.15 -2.94 5.77 -26.61 -0.15 -3.10 16 15 C 0.17 3.89 5.05 -3.71 -0.02 3.87 16 16 N -0.59 -13.47 2.99 -172.32 -0.52 -13.99 16 17 C -0.26 -6.66 9.59 -15.06 -0.14 -6.80 16 18 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 19 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 20 N -0.90 -24.93 11.19 55.49 0.62 -24.31 16 21 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.21 5.85 -3.71 -0.02 2.19 16 26 C 0.07 1.22 3.36 -26.61 -0.09 1.13 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -8.20 13.21 -35.23 -0.47 -8.67 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.50 6.56 -51.93 -0.34 1.16 16 34 H 0.19 1.61 7.46 -52.49 -0.39 1.22 16 35 H 0.40 6.10 5.79 -40.82 -0.24 5.87 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.09 2.30 6.03 -51.93 -0.31 1.99 16 39 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.36 6.64 -51.93 -0.34 0.02 16 43 H 0.37 3.78 9.08 45.56 0.41 4.20 16 LS Contribution 348.71 15.07 5.26 5.26 Total: -1.00 -32.36 348.71 -8.14 -40.51 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.57 Total: 10.43 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.95 Total: 5.89 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: 0.53 Total: -58.63 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.39 Total: -19.23 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.36 -8.14 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090380695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.242 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds