Wall clock time and date at job start Fri Apr 10 2020 17:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.47054 * 2 1 4 4 N 1.30445 * 125.99151 * 270.17477 * 3 2 1 5 5 N 1.39932 * 108.89442 * 180.26354 * 4 3 2 6 6 H 0.97000 * 125.75183 * 179.73878 * 5 4 3 7 7 C 1.34260 * 108.49375 * 359.73282 * 5 4 3 8 8 C 1.38043 * 107.41501 * 359.97438 * 7 5 4 9 9 C 1.47434 * 126.41073 * 179.97438 * 8 7 5 10 10 O 1.21601 * 119.99644 * 180.02562 * 9 8 7 11 11 N 1.34768 * 120.00199 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99963 * 179.72558 * 11 9 8 13 13 H 1.08998 * 109.46060 * 325.29747 * 12 11 9 14 14 C 1.53034 * 109.46026 * 85.27632 * 12 11 9 15 15 C 1.53198 * 109.31368 * 58.65703 * 14 12 11 16 16 N 1.46927 * 108.77462 * 54.63110 * 15 14 12 17 17 C 1.36939 * 120.63089 * 126.36996 * 16 15 14 18 18 H 1.07995 * 120.00478 * 207.68438 * 17 16 15 19 19 C 1.38818 * 119.99808 * 27.68148 * 17 16 15 20 20 N 1.31625 * 119.99652 * 17.37664 * 19 17 16 21 21 Si 1.86799 * 120.00153 * 197.37128 * 19 17 16 22 22 H 1.48500 * 109.47166 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46965 * 120.00139 * 21 19 17 24 24 H 1.48500 * 109.47063 * 240.00419 * 21 19 17 25 25 C 1.46919 * 118.74316 * 306.39545 * 16 15 14 26 26 C 1.53041 * 109.45909 * 205.34677 * 12 11 9 27 27 H 1.08999 * 109.49751 * 181.39392 * 26 12 11 28 28 O 1.42902 * 109.49852 * 61.29391 * 26 12 11 29 29 H 1.09002 * 109.47366 * 299.99427 * 1 2 3 30 30 H 1.08999 * 109.47640 * 59.99898 * 1 2 3 31 31 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47366 * 240.00572 * 2 1 3 33 33 H 1.08999 * 109.47640 * 120.00102 * 2 1 3 34 34 H 1.07999 * 126.29180 * 180.02562 * 7 5 4 35 35 H 0.97000 * 120.00021 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.49602 * 178.60568 * 14 12 11 37 37 H 1.08997 * 109.49753 * 298.70417 * 14 12 11 38 38 H 1.08999 * 109.58770 * 174.41766 * 15 14 12 39 39 H 1.08998 * 109.58623 * 294.70731 * 15 14 12 40 40 H 0.96996 * 119.99366 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.58950 * 173.39382 * 25 16 15 42 42 H 1.08998 * 109.58571 * 293.82372 * 25 16 15 43 43 H 0.96702 * 113.99627 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2848 2.1447 -1.0554 5 7 2.7375 3.4032 -0.6441 6 1 2.9981 4.1311 -1.2299 7 6 2.7502 3.4335 0.6981 8 6 2.3084 2.2038 1.1433 9 6 2.1597 1.7835 2.5486 10 8 1.7583 0.6658 2.8097 11 7 2.4686 2.6382 3.5438 12 6 2.3151 2.2226 4.9403 13 1 1.4524 1.5625 5.0300 14 6 3.5745 1.4803 5.3927 15 6 4.7895 2.3998 5.2331 16 7 4.5336 3.6517 5.9582 17 6 5.4245 4.1128 6.8904 18 1 5.0802 4.7276 7.7088 19 6 6.7703 3.7898 6.7834 20 7 7.2520 3.3467 5.6413 21 14 7.8978 3.9840 8.2601 22 1 7.1169 4.4950 9.4152 23 1 8.4900 2.6671 8.6072 24 1 8.9825 4.9436 7.9318 25 6 3.3034 4.3994 5.6648 26 6 2.1051 3.4575 5.8195 27 1 2.0155 3.1511 6.8617 28 8 0.9122 4.1331 5.4161 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.0501 4.2670 1.3159 35 1 2.7884 3.5300 3.3355 36 1 3.4711 1.1925 6.4389 37 1 3.7105 0.5883 4.7812 38 1 5.6731 1.9127 5.6455 39 1 4.9497 2.6135 4.1763 40 1 8.1924 3.1214 5.5665 41 1 3.2064 5.2317 6.3619 42 1 3.3408 4.7781 4.6434 43 1 0.7162 4.9271 5.9321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090380695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:05 Heat of formation + Delta-G solvation = -22.077409 kcal Electronic energy + Delta-G solvation = -26486.906402 eV Core-core repulsion = 22760.977741 eV Total energy + Delta-G solvation = -3725.928661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43655 -40.83757 -39.03432 -36.89579 -35.67166 -35.01683 -33.55207 -32.22859 -31.27697 -30.93211 -29.91011 -27.16490 -25.02119 -24.53684 -23.75834 -23.50863 -21.75505 -20.55635 -20.15657 -19.48686 -18.68249 -17.94441 -17.54765 -16.81754 -16.56077 -16.28462 -15.86197 -15.70180 -15.55614 -15.32751 -15.04907 -14.90742 -14.74714 -14.29933 -13.91713 -13.75405 -13.48747 -13.26407 -13.20513 -12.97748 -12.75103 -12.42720 -12.32192 -12.16748 -12.10554 -11.95054 -11.79930 -11.77330 -11.23067 -10.98121 -10.74228 -10.53619 -10.48644 -10.05206 -9.69256 -8.67838 -7.87048 -5.32191 0.54742 1.11164 1.47655 1.51798 1.60101 1.79598 2.37239 2.51347 2.52865 3.20976 3.29877 3.46713 3.70374 3.74752 3.95195 4.12524 4.16097 4.23643 4.32895 4.43049 4.44371 4.49132 4.56053 4.60598 4.71125 4.75677 4.93521 5.03780 5.06156 5.11054 5.17996 5.20256 5.31039 5.46143 5.47281 5.63117 5.67667 5.75135 6.25051 6.37987 6.49515 6.74351 6.93855 7.14982 7.40767 7.84436 8.34995 9.18925 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018478 B = 0.003930 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.923063 B = 7122.846510 C = 7577.237231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 C 0.125 3.875 4 N -0.319 5.319 5 N -0.446 5.446 6 H 0.460 0.540 7 C 0.130 3.870 8 C -0.315 4.315 9 C 0.590 3.410 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.172 3.828 13 H 0.074 0.926 14 C -0.140 4.140 15 C 0.186 3.814 16 N -0.601 5.601 17 C -0.261 4.261 18 H 0.072 0.928 19 C -0.045 4.045 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.119 3.881 26 C 0.095 3.905 27 H 0.068 0.932 28 O -0.570 6.570 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.217 0.783 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.006 0.994 40 H 0.248 0.752 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 2.140 -8.653 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.043 4.043 4 N -0.142 5.142 5 N -0.152 5.152 6 H 0.309 0.691 7 C -0.025 4.025 8 C -0.330 4.330 9 C 0.379 3.621 10 O -0.461 6.461 11 N -0.349 5.349 12 C 0.066 3.934 13 H 0.092 0.908 14 C -0.180 4.180 15 C 0.060 3.940 16 N -0.326 5.326 17 C -0.391 4.391 18 H 0.090 0.910 19 C -0.241 4.241 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.221 1.221 25 C -0.007 4.007 26 C 0.034 3.966 27 H 0.086 0.914 28 O -0.377 6.377 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.233 0.767 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.024 0.976 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.907 0.908 -10.197 15.703 hybrid contribution 1.485 1.255 1.617 2.529 sum -10.422 2.163 -8.580 13.672 Atomic orbital electron populations 1.21538 0.93184 1.02806 1.01174 1.20116 0.97206 0.87790 1.03734 1.22654 0.95244 0.97477 0.88898 1.77057 1.22760 0.91873 1.22480 1.46093 1.50316 1.13169 1.05597 0.69117 1.23584 0.94326 0.98616 0.85950 1.20343 1.21677 0.97173 0.93845 1.17489 0.76095 0.84201 0.84315 1.90673 1.49159 1.21421 1.84830 1.45655 1.66883 1.17170 1.05202 1.20646 0.97193 0.95103 0.80426 0.90813 1.22384 0.96177 0.98496 1.00951 1.20462 0.94395 0.85626 0.93515 1.44164 1.20557 1.22009 1.45825 1.19537 0.87779 1.29562 1.02241 0.91009 1.25708 0.98152 1.01754 0.98489 1.70179 1.13122 1.50042 1.24297 0.85306 0.78850 0.76704 0.80150 1.18892 1.22236 1.22130 1.21678 0.86087 0.94032 0.98900 1.22346 0.84969 0.92309 0.96965 0.91405 1.86468 1.42371 1.45220 1.63632 0.94073 0.92437 0.90364 0.89425 0.89906 0.76658 0.76055 0.91392 0.92485 0.93072 0.97626 0.94250 0.91280 0.95272 0.75557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.89 71.98 0.71 -2.28 16 2 C -0.05 -1.29 5.97 29.85 0.18 -1.11 16 3 C 0.13 3.58 6.52 43.52 0.28 3.87 16 4 N -0.32 -8.33 12.63 -46.67 -0.59 -8.92 16 5 N -0.45 -8.53 7.29 -56.32 -0.41 -8.94 16 6 H 0.46 5.03 8.96 -213.43 -1.91 3.12 16 7 C 0.13 2.73 11.52 84.28 0.97 3.70 16 8 C -0.32 -9.16 6.13 -20.15 -0.12 -9.29 16 9 C 0.59 20.11 7.78 86.67 0.67 20.79 16 10 O -0.58 -22.84 14.58 -4.03 -0.06 -22.90 16 11 N -0.70 -22.31 4.14 -445.68 -1.85 -24.16 16 12 C 0.17 5.85 2.47 45.02 0.11 5.96 16 13 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 14 C -0.14 -5.40 5.77 30.67 0.18 -5.23 16 15 C 0.19 8.51 5.05 86.36 0.44 8.95 16 16 N -0.60 -27.14 2.99 -699.10 -2.09 -29.23 16 17 C -0.26 -13.22 9.59 84.03 0.81 -12.42 16 18 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 19 C -0.05 -2.38 4.91 84.86 0.42 -1.97 16 20 N -0.93 -52.54 11.19 21.65 0.24 -52.30 16 21 Si 0.96 42.86 29.59 68.60 2.03 44.89 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 C 0.12 4.14 5.85 86.37 0.50 4.64 16 26 C 0.10 2.89 3.36 30.67 0.10 3.00 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 O -0.57 -14.55 13.21 -148.98 -1.97 -16.52 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.50 6.56 -2.39 -0.02 2.49 16 34 H 0.22 3.04 7.46 -2.91 -0.02 3.02 16 35 H 0.40 11.66 5.79 -92.71 -0.54 11.12 16 36 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.74 6.03 -2.39 -0.01 2.72 16 39 H 0.01 0.27 7.74 -2.39 -0.02 0.25 16 40 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 41 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 42 H 0.03 0.98 6.64 -2.39 -0.02 0.97 16 43 H 0.39 6.47 9.08 -74.06 -0.67 5.80 16 Total: -1.00 -70.16 348.71 -1.50 -71.66 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -2.05 Total: 27.80 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: 5.25 Total: 18.62 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -4.70 Total: -123.55 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -2.03 Total: -39.42 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -70.16 -1.50 -71.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090380695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.587 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds