Wall clock time and date at job start Fri Apr 10 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50693 * 109.46972 * 2 1 4 4 N 1.30451 * 125.99313 * 270.17020 * 3 2 1 5 5 N 1.39936 * 108.89778 * 180.26597 * 4 3 2 6 6 H 0.97003 * 125.75551 * 179.73262 * 5 4 3 7 7 C 1.34259 * 108.49202 * 359.74291 * 5 4 3 8 8 C 1.38042 * 107.41856 * 359.97438 * 7 5 4 9 9 C 1.47427 * 126.41777 * 179.97438 * 8 7 5 10 10 O 1.21600 * 120.00451 * 180.02562 * 9 8 7 11 11 N 1.34780 * 119.99750 * 0.02932 * 9 8 7 12 12 C 1.46495 * 119.99790 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46304 * 325.01814 * 12 11 9 14 14 C 1.53041 * 109.46714 * 84.99289 * 12 11 9 15 15 C 1.53183 * 109.31534 * 181.36956 * 14 12 11 16 16 N 1.46927 * 108.78012 * 305.36562 * 15 14 12 17 17 C 1.36933 * 120.63353 * 233.59018 * 16 15 14 18 18 H 1.08000 * 120.00191 * 151.84471 * 17 16 15 19 19 C 1.38816 * 120.00216 * 331.84389 * 17 16 15 20 20 N 1.31624 * 119.99356 * 343.07025 * 19 17 16 21 21 Si 1.86793 * 120.00395 * 163.07047 * 19 17 16 22 22 H 1.48493 * 109.47484 * 90.00085 * 21 19 17 23 23 H 1.48503 * 109.47169 * 210.00310 * 21 19 17 24 24 H 1.48506 * 109.47138 * 329.99723 * 21 19 17 25 25 C 1.46927 * 118.73625 * 53.60636 * 16 15 14 26 26 C 1.53188 * 108.89428 * 306.32307 * 25 16 15 27 27 H 1.09002 * 109.50218 * 294.75539 * 26 25 16 28 28 O 1.42905 * 109.50043 * 174.65485 * 26 25 16 29 29 H 1.09002 * 109.46802 * 299.99523 * 1 2 3 30 30 H 1.08998 * 109.46961 * 59.99623 * 1 2 3 31 31 H 1.09002 * 109.46853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46802 * 240.00477 * 2 1 3 33 33 H 1.08998 * 109.46961 * 120.00377 * 2 1 3 34 34 H 1.07999 * 126.29410 * 180.02562 * 7 5 4 35 35 H 0.96993 * 120.00102 * 359.97438 * 11 9 8 36 36 H 1.08998 * 109.49362 * 61.41712 * 14 12 11 37 37 H 1.08995 * 109.49667 * 301.32731 * 14 12 11 38 38 H 1.09002 * 109.58545 * 185.57962 * 15 14 12 39 39 H 1.09004 * 109.70475 * 65.22489 * 15 14 12 40 40 H 0.96997 * 119.99488 * 180.02562 * 20 19 17 41 41 H 1.08997 * 109.58516 * 66.18154 * 25 16 15 42 42 H 1.09000 * 109.58539 * 186.46214 * 25 16 15 43 43 H 0.96705 * 113.99517 * 60.00305 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2849 2.1446 -1.0555 5 7 2.7376 3.4032 -0.6441 6 1 2.9984 4.1311 -1.2299 7 6 2.7505 3.4334 0.6981 8 6 2.3088 2.2037 1.1433 9 6 2.1602 1.7833 2.5486 10 8 1.7589 0.6656 2.8097 11 7 2.4691 2.6381 3.5438 12 6 2.3220 2.2202 4.9402 13 1 1.4593 1.5604 5.0329 14 6 3.5831 1.4761 5.3854 15 6 3.4118 1.0111 6.8349 16 7 3.0712 2.1729 7.6673 17 6 3.8037 2.4686 8.7859 18 1 3.8777 3.4901 9.1284 19 6 4.4510 1.4553 9.4795 20 7 4.1080 0.1999 9.2826 21 14 5.8088 1.8733 10.6923 22 1 5.2217 2.0818 12.0402 23 1 6.7862 0.7566 10.7455 24 1 6.4982 3.1140 10.2553 25 6 1.9295 3.0112 7.2769 26 6 2.1156 3.4570 5.8231 27 1 2.9888 4.1053 5.7502 28 8 0.9546 4.1690 5.3902 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0504 4.2669 1.3159 35 1 2.7895 3.5295 3.3355 36 1 4.4424 2.1431 5.3165 37 1 3.7411 0.6107 4.7419 38 1 4.3428 0.5682 7.1890 39 1 2.6114 0.2734 6.8920 40 1 4.5601 -0.5081 9.7676 41 1 1.0071 2.4378 7.3680 42 1 1.8809 3.8869 7.9242 43 1 0.7634 4.9622 5.9094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090380697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:09 Heat of formation + Delta-G solvation = 0.893208 kcal Electronic energy + Delta-G solvation = -25959.222903 eV Core-core repulsion = 22234.290323 eV Total energy + Delta-G solvation = -3724.932580 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54514 -39.34434 -37.71598 -35.39831 -34.59556 -33.92448 -32.05908 -30.76394 -30.41017 -29.55435 -28.40444 -25.22837 -24.09013 -23.28840 -22.29244 -21.75361 -20.14448 -19.81552 -19.34271 -18.41087 -17.11232 -16.54461 -16.27632 -15.67914 -15.33269 -14.82675 -14.77288 -14.13546 -14.10659 -13.98295 -13.88706 -13.58975 -13.17253 -12.99604 -12.73808 -12.37367 -12.25215 -12.02566 -11.55513 -11.52640 -11.27623 -11.09498 -10.87026 -10.82042 -10.64428 -10.31189 -10.26503 -9.94345 -9.76463 -9.70803 -9.66840 -9.36251 -8.97690 -8.65411 -8.41409 -6.76062 -5.84823 -3.29177 1.38130 2.09894 2.50817 3.33778 3.41295 3.42710 3.51203 3.63958 4.33022 4.38041 4.47478 4.52661 4.97025 5.20287 5.27512 5.31472 5.34910 5.40560 5.47225 5.51862 5.58351 5.60777 5.78983 5.95537 5.99553 6.12689 6.14471 6.24454 6.35238 6.41061 6.49240 6.57671 6.69666 6.78806 6.87795 6.94814 7.30849 7.37284 7.62388 7.72924 7.86014 7.91941 8.38172 8.58656 9.13491 9.75890 10.32057 11.23724 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.003243 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.521004 B = 8632.494145 C = 8895.612212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.138 3.862 4 N -0.302 5.302 5 N -0.465 5.465 6 H 0.442 0.558 7 C 0.101 3.899 8 C -0.278 4.278 9 C 0.590 3.410 10 O -0.539 6.539 11 N -0.715 5.715 12 C 0.165 3.835 13 H 0.089 0.911 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.260 4.260 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.121 3.879 26 C 0.080 3.920 27 H 0.055 0.945 28 O -0.571 6.571 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.391 0.609 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.256 0.744 41 H 0.029 0.971 42 H 0.059 0.941 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 8.166 -17.529 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.030 4.030 4 N -0.125 5.125 5 N -0.169 5.169 6 H 0.286 0.714 7 C -0.052 4.052 8 C -0.293 4.293 9 C 0.376 3.624 10 O -0.417 6.417 11 N -0.364 5.364 12 C 0.062 3.938 13 H 0.107 0.893 14 C -0.186 4.186 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.007 4.007 26 C 0.019 3.981 27 H 0.073 0.927 28 O -0.375 6.375 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.201 0.799 35 H 0.224 0.776 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.118 6.745 -18.946 20.351 hybrid contribution 1.139 1.711 1.585 2.595 sum -1.979 8.455 -17.361 19.412 Atomic orbital electron populations 1.21613 0.93972 1.02102 1.01933 1.20140 0.96566 0.87997 1.04188 1.22502 0.94827 0.96955 0.88675 1.77144 1.22076 0.90737 1.22511 1.46075 1.51855 1.13561 1.05427 0.71358 1.23147 0.97485 0.98911 0.85611 1.20442 1.18488 0.95370 0.95008 1.17194 0.77090 0.84781 0.83300 1.90748 1.46777 1.20079 1.84094 1.45913 1.67659 1.16477 1.06365 1.21038 0.99869 0.95000 0.77933 0.89334 1.22592 0.95807 0.99536 1.00675 1.20827 1.01513 0.88432 0.84735 1.44035 1.30310 1.29826 1.27033 1.19136 1.24708 0.92288 1.02845 0.91629 1.25078 1.00856 0.95487 0.97939 1.70034 1.41504 0.98761 1.43859 0.86293 0.81920 0.77459 0.81034 1.21333 1.21466 1.20470 1.21520 0.91848 0.95714 0.91632 1.22828 0.86819 0.92300 0.96161 0.92726 1.86487 1.47882 1.42898 1.60212 0.92015 0.93172 0.91873 0.90758 0.87821 0.79853 0.77623 0.92479 0.91795 0.88981 0.95744 0.93429 0.95316 0.92279 0.78085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.05 -0.62 5.97 -27.88 -0.17 -0.78 16 3 C 0.14 1.84 6.52 -82.02 -0.53 1.31 16 4 N -0.30 -3.71 12.63 33.90 0.43 -3.28 16 5 N -0.46 -4.02 7.29 30.85 0.22 -3.80 16 6 H 0.44 2.10 8.96 -182.72 -1.64 0.46 16 7 C 0.10 0.91 11.52 -16.56 -0.19 0.72 16 8 C -0.28 -3.64 6.13 -105.06 -0.64 -4.28 16 9 C 0.59 9.33 7.78 -12.52 -0.10 9.24 16 10 O -0.54 -10.32 14.58 5.28 0.08 -10.24 16 11 N -0.72 -10.44 4.91 -54.68 -0.27 -10.71 16 12 C 0.17 2.92 2.13 -67.73 -0.14 2.78 16 13 H 0.09 1.82 7.57 -51.93 -0.39 1.43 16 14 C -0.15 -2.83 5.65 -26.62 -0.15 -2.98 16 15 C 0.17 4.05 5.30 -3.71 -0.02 4.03 16 16 N -0.59 -14.22 2.99 -172.32 -0.52 -14.74 16 17 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 18 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 19 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 20 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 21 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.12 2.41 6.13 -3.71 -0.02 2.39 16 26 C 0.08 1.32 3.16 -26.45 -0.08 1.23 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 O -0.57 -8.23 13.18 -35.23 -0.46 -8.70 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.45 6.56 -51.93 -0.34 1.11 16 34 H 0.18 0.93 7.46 -52.49 -0.39 0.54 16 35 H 0.39 4.51 7.53 -40.82 -0.31 4.20 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.37 3.81 9.08 45.56 0.41 4.22 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -33.88 353.00 -8.26 -42.14 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.74 Total: 7.50 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.92 Total: 5.47 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.49 Total: -57.54 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.39 Total: -18.94 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.88 -8.26 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090380697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.030 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds