Wall clock time and date at job start Fri Apr 10 2020 17:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30856 * 125.41767 * 2 1 4 4 C 1.33322 * 109.68853 * 180.02562 * 3 2 1 5 5 C 1.36671 * 107.78360 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84674 * 179.97438 * 5 4 3 7 7 O 1.21676 * 120.00131 * 174.65427 * 6 5 4 8 8 N 1.34774 * 119.99624 * 354.93615 * 6 5 4 9 9 C 1.46500 * 119.99548 * 184.96230 * 8 6 5 10 10 H 1.08997 * 109.46434 * 35.00130 * 9 8 6 11 11 C 1.53042 * 109.46068 * 275.02412 * 9 8 6 12 12 C 1.53196 * 109.31220 * 178.60273 * 11 9 8 13 13 N 1.46926 * 108.76220 * 54.65696 * 12 11 9 14 14 C 1.36943 * 120.62935 * 126.40706 * 13 12 11 15 15 H 1.07999 * 120.00010 * 211.60962 * 14 13 12 16 16 C 1.38811 * 119.99891 * 31.61109 * 14 13 12 17 17 N 1.31622 * 120.00058 * 10.16374 * 16 14 13 18 18 Si 1.86803 * 119.99845 * 190.16234 * 16 14 13 19 19 H 1.48491 * 109.47172 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46860 * 119.99999 * 18 16 14 21 21 H 1.48497 * 109.47078 * 239.99717 * 18 16 14 22 22 C 1.46922 * 118.74299 * 306.37917 * 13 12 11 23 23 C 1.53047 * 109.45983 * 154.97388 * 9 8 6 24 24 H 1.08994 * 109.49730 * 61.39835 * 23 9 8 25 25 O 1.42907 * 109.49340 * 301.33489 * 23 9 8 26 26 N 1.34495 * 125.41938 * 180.27702 * 2 1 3 27 27 C 1.46504 * 126.47365 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47212 * 89.97171 * 1 2 3 29 29 H 1.09004 * 109.46937 * 209.97425 * 1 2 3 30 30 H 1.08998 * 109.47393 * 329.97521 * 1 2 3 31 31 H 1.07998 * 126.11094 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00566 * 4.96196 * 8 6 5 33 33 H 1.09004 * 109.49641 * 298.56384 * 11 9 8 34 34 H 1.08994 * 109.50045 * 58.66400 * 11 9 8 35 35 H 1.08992 * 109.59789 * 294.86875 * 12 11 9 36 36 H 1.08997 * 109.58587 * 174.43473 * 12 11 9 37 37 H 0.97004 * 119.99846 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.58850 * 293.82759 * 22 13 12 39 39 H 1.08992 * 109.70901 * 173.46942 * 22 13 12 40 40 H 0.96696 * 113.99726 * 180.02562 * 25 23 9 41 41 H 1.09006 * 109.46947 * 274.62003 * 27 26 2 42 42 H 1.08994 * 109.47033 * 34.62066 * 27 26 2 43 43 H 1.09002 * 109.47197 * 154.62481 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 4.7040 -2.7070 0.0972 8 7 6.0195 -0.9280 -0.1056 9 6 7.2150 -1.7676 -0.2161 10 1 6.9785 -2.6622 -0.7921 11 6 7.6854 -2.1716 1.1831 12 6 8.9146 -3.0778 1.0623 13 7 9.9333 -2.3879 0.2593 14 6 11.2060 -2.2242 0.7378 15 1 11.7807 -1.3539 0.4571 16 6 11.7573 -3.1769 1.5835 17 7 11.1447 -4.3273 1.7672 18 14 13.3689 -2.8264 2.4607 19 1 13.8508 -1.4721 2.0884 20 1 13.1569 -2.8894 3.9292 21 1 14.3796 -3.8388 2.0626 22 6 9.5610 -1.8773 -1.0671 23 6 8.3243 -0.9849 -0.9225 24 1 8.5783 -0.1029 -0.3345 25 8 7.8732 -0.5814 -2.2171 26 7 2.2864 -1.0960 -0.0053 27 6 1.8311 -2.4885 -0.0126 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.3978 1.3723 -0.0003 32 1 6.1037 0.0383 -0.1075 33 1 7.9460 -1.2786 1.7513 34 1 6.8866 -2.7086 1.6946 35 1 8.6344 -4.0109 0.5736 36 1 9.3126 -3.2880 2.0550 37 1 11.5302 -4.9932 2.3579 38 1 9.3334 -2.7126 -1.7295 39 1 10.3845 -1.2962 -1.4818 40 1 8.5272 -0.0798 -2.7227 41 1 1.6391 -2.8133 1.0101 42 1 0.9146 -2.5680 -0.5971 43 1 2.6009 -3.1202 -0.4559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090520332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:25 Heat of formation + Delta-G solvation = -3.926564 kcal Electronic energy + Delta-G solvation = -25894.384661 eV Core-core repulsion = 22169.243080 eV Total energy + Delta-G solvation = -3725.141581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37497 -39.55742 -37.84404 -35.41410 -34.70863 -33.93331 -32.36929 -31.74776 -30.08928 -28.72704 -27.74708 -26.90745 -25.07993 -23.11882 -22.32381 -21.76815 -20.38297 -19.99875 -19.41786 -17.82661 -17.04959 -16.54520 -16.30354 -16.19495 -15.77286 -14.91187 -14.48404 -14.44986 -14.03711 -13.92685 -13.70334 -13.58478 -13.33396 -13.19669 -12.96242 -12.81829 -12.64581 -12.62128 -12.29135 -12.06916 -11.55524 -11.10234 -10.94089 -10.71108 -10.44802 -10.34668 -10.25245 -10.01460 -9.89189 -9.82904 -9.74263 -9.46830 -8.87280 -8.57834 -8.44734 -6.73532 -5.86402 -3.36759 1.24896 2.35279 2.68916 3.32026 3.38139 3.39863 3.41634 3.43397 4.13769 4.34310 4.47057 4.52950 4.64812 4.86681 4.98670 5.11838 5.17642 5.26344 5.29333 5.33842 5.37424 5.46007 5.52226 5.52622 5.75115 5.93902 6.00475 6.09389 6.27791 6.37101 6.46627 6.49950 6.66332 6.75908 6.82015 6.87892 7.29101 7.60488 7.64121 7.71206 7.78740 7.90470 8.31750 8.38850 9.12456 9.72571 10.29918 11.21703 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.003051 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.330214 B = 9176.531306 C = 9526.874887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.219 3.781 3 N -0.495 5.495 4 C 0.036 3.964 5 C -0.079 4.079 6 C 0.592 3.408 7 O -0.547 6.547 8 N -0.701 5.701 9 C 0.167 3.833 10 H 0.088 0.912 11 C -0.148 4.148 12 C 0.172 3.828 13 N -0.588 5.588 14 C -0.259 4.259 15 H 0.066 0.934 16 C 0.007 3.993 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.121 3.879 23 C 0.079 3.921 24 H 0.058 0.942 25 O -0.571 6.571 26 N -0.424 5.424 27 C 0.065 3.935 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.178 0.822 32 H 0.399 0.601 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.095 0.905 37 H 0.255 0.745 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.374 0.626 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 7.991 -4.213 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.214 5.214 4 C -0.118 4.118 5 C -0.196 4.196 6 C 0.378 3.622 7 O -0.426 6.426 8 N -0.350 5.350 9 C 0.064 3.936 10 H 0.106 0.894 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.312 5.312 14 C -0.389 4.389 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.545 5.545 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.006 4.006 23 C 0.018 3.982 24 H 0.076 0.924 25 O -0.376 6.376 26 N -0.105 5.105 27 C -0.077 4.077 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.195 0.805 32 H 0.233 0.767 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.221 0.779 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.819 7.260 -3.873 20.540 hybrid contribution 1.746 0.002 0.315 1.774 sum -17.074 7.261 -3.558 18.892 Atomic orbital electron populations 1.20244 0.84486 1.04303 1.03755 1.23402 0.95874 0.81247 1.03731 1.70077 1.02172 1.28125 1.21002 1.22607 0.95098 0.91323 1.02815 1.20887 0.85397 0.94990 1.18328 1.16739 0.82113 0.86609 0.76757 1.90784 1.86767 1.14177 1.50900 1.45751 1.05386 1.10467 1.73354 1.21059 0.81771 0.93429 0.97371 0.89416 1.22639 1.00423 1.01504 0.94254 1.20847 0.84957 0.91025 0.98534 1.44013 1.08356 1.66817 1.12059 1.19194 0.90521 1.02713 1.26424 0.91610 1.25212 0.97989 0.94686 1.01364 1.69982 1.39647 1.05622 1.39234 0.86163 0.83229 0.77700 0.79294 1.20190 1.21475 1.21547 1.21530 0.93682 0.95773 0.89661 1.22797 0.94934 0.97285 0.83147 0.92445 1.86484 1.44673 1.76676 1.29726 1.45071 1.05205 1.08315 1.51904 1.22291 1.02330 0.78961 1.04072 0.89864 0.90602 0.88819 0.80474 0.76734 0.92269 0.91823 0.95831 0.88711 0.93441 0.95326 0.92083 0.77902 0.90111 0.89718 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.01 36.00 0.36 -0.10 16 2 C 0.22 2.51 7.88 -155.62 -1.23 1.28 16 3 N -0.49 -6.65 11.20 -10.58 -0.12 -6.76 16 4 C 0.04 0.47 11.37 -17.47 -0.20 0.27 16 5 C -0.08 -1.12 6.91 -82.14 -0.57 -1.69 16 6 C 0.59 9.60 7.74 -12.82 -0.10 9.50 16 7 O -0.55 -10.38 14.51 5.21 0.08 -10.30 16 8 N -0.70 -10.64 4.90 -55.04 -0.27 -10.91 16 9 C 0.17 2.97 2.08 -67.88 -0.14 2.83 16 10 H 0.09 1.79 7.66 -51.93 -0.40 1.39 16 11 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 12 C 0.17 4.08 5.25 -3.71 -0.02 4.07 16 13 N -0.59 -14.23 2.99 -172.33 -0.51 -14.74 16 14 C -0.26 -6.84 9.58 -15.06 -0.14 -6.99 16 15 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 17 N -0.90 -25.66 11.04 55.49 0.61 -25.04 16 18 Si 0.91 21.13 29.57 -169.99 -5.03 16.11 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.12 2.42 6.14 -3.71 -0.02 2.40 16 23 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 O -0.57 -8.38 13.16 -35.23 -0.46 -8.85 16 26 N -0.42 -5.23 3.17 -117.27 -0.37 -5.60 16 27 C 0.07 0.62 10.27 59.85 0.61 1.24 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.36 7.79 -51.93 -0.40 -0.05 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.18 1.82 7.46 -52.49 -0.39 1.43 16 32 H 0.40 5.05 7.55 -40.82 -0.31 4.74 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.50 6.11 -51.93 -0.32 2.19 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 40 H 0.37 3.91 9.08 45.56 0.41 4.33 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.52 7.87 -51.93 -0.41 0.12 16 43 H 0.11 1.27 6.37 -51.93 -0.33 0.94 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -33.70 351.98 -8.02 -41.73 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.48 Total: 7.97 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.77 Total: 11.11 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.66 Total: -63.06 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.39 Total: -19.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.70 -8.02 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090520332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.799 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds