Wall clock time and date at job start Fri Apr 10 2020 17:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30856 * 125.41767 * 2 1 4 4 C 1.33322 * 109.68853 * 180.02562 * 3 2 1 5 5 C 1.36671 * 107.78360 * 359.97438 * 4 3 2 6 6 C 1.46766 * 126.84674 * 179.97438 * 5 4 3 7 7 O 1.21676 * 120.00131 * 174.65427 * 6 5 4 8 8 N 1.34774 * 119.99624 * 354.93615 * 6 5 4 9 9 C 1.46500 * 119.99548 * 184.96230 * 8 6 5 10 10 H 1.08997 * 109.46434 * 35.00130 * 9 8 6 11 11 C 1.53042 * 109.46068 * 275.02412 * 9 8 6 12 12 C 1.53196 * 109.31220 * 178.60273 * 11 9 8 13 13 N 1.46926 * 108.76220 * 54.65696 * 12 11 9 14 14 C 1.36943 * 120.62935 * 126.40706 * 13 12 11 15 15 H 1.07999 * 120.00010 * 211.60962 * 14 13 12 16 16 C 1.38811 * 119.99891 * 31.61109 * 14 13 12 17 17 N 1.31622 * 120.00058 * 10.16374 * 16 14 13 18 18 Si 1.86803 * 119.99845 * 190.16234 * 16 14 13 19 19 H 1.48491 * 109.47172 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46860 * 119.99999 * 18 16 14 21 21 H 1.48497 * 109.47078 * 239.99717 * 18 16 14 22 22 C 1.46922 * 118.74299 * 306.37917 * 13 12 11 23 23 C 1.53047 * 109.45983 * 154.97388 * 9 8 6 24 24 H 1.08994 * 109.49730 * 61.39835 * 23 9 8 25 25 O 1.42907 * 109.49340 * 301.33489 * 23 9 8 26 26 N 1.34495 * 125.41938 * 180.27702 * 2 1 3 27 27 C 1.46504 * 126.47365 * 0.02562 * 26 2 1 28 28 H 1.08997 * 109.47212 * 89.97171 * 1 2 3 29 29 H 1.09004 * 109.46937 * 209.97425 * 1 2 3 30 30 H 1.08998 * 109.47393 * 329.97521 * 1 2 3 31 31 H 1.07998 * 126.11094 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00566 * 4.96196 * 8 6 5 33 33 H 1.09004 * 109.49641 * 298.56384 * 11 9 8 34 34 H 1.08994 * 109.50045 * 58.66400 * 11 9 8 35 35 H 1.08992 * 109.59789 * 294.86875 * 12 11 9 36 36 H 1.08997 * 109.58587 * 174.43473 * 12 11 9 37 37 H 0.97004 * 119.99846 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.58850 * 293.82759 * 22 13 12 39 39 H 1.08992 * 109.70901 * 173.46942 * 22 13 12 40 40 H 0.96696 * 113.99726 * 180.02562 * 25 23 9 41 41 H 1.09006 * 109.46947 * 274.62003 * 27 26 2 42 42 H 1.08994 * 109.47033 * 34.62066 * 27 26 2 43 43 H 1.09002 * 109.47197 * 154.62481 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 4.7040 -2.7070 0.0972 8 7 6.0195 -0.9280 -0.1056 9 6 7.2150 -1.7676 -0.2161 10 1 6.9785 -2.6622 -0.7921 11 6 7.6854 -2.1716 1.1831 12 6 8.9146 -3.0778 1.0623 13 7 9.9333 -2.3879 0.2593 14 6 11.2060 -2.2242 0.7378 15 1 11.7807 -1.3539 0.4571 16 6 11.7573 -3.1769 1.5835 17 7 11.1447 -4.3273 1.7672 18 14 13.3689 -2.8264 2.4607 19 1 13.8508 -1.4721 2.0884 20 1 13.1569 -2.8894 3.9292 21 1 14.3796 -3.8388 2.0626 22 6 9.5610 -1.8773 -1.0671 23 6 8.3243 -0.9849 -0.9225 24 1 8.5783 -0.1029 -0.3345 25 8 7.8732 -0.5814 -2.2171 26 7 2.2864 -1.0960 -0.0053 27 6 1.8311 -2.4885 -0.0126 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5135 30 1 -0.3634 0.8897 0.5142 31 1 4.3978 1.3723 -0.0003 32 1 6.1037 0.0383 -0.1075 33 1 7.9460 -1.2786 1.7513 34 1 6.8866 -2.7086 1.6946 35 1 8.6344 -4.0109 0.5736 36 1 9.3126 -3.2880 2.0550 37 1 11.5302 -4.9932 2.3579 38 1 9.3334 -2.7126 -1.7295 39 1 10.3845 -1.2962 -1.4818 40 1 8.5272 -0.0798 -2.7227 41 1 1.6391 -2.8133 1.0101 42 1 0.9146 -2.5680 -0.5971 43 1 2.6009 -3.1202 -0.4559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090520332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:24 Heat of formation + Delta-G solvation = -29.687835 kcal Electronic energy + Delta-G solvation = -25895.501753 eV Core-core repulsion = 22169.243080 eV Total energy + Delta-G solvation = -3726.258674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.30636 -40.92228 -39.29723 -36.97021 -35.97979 -35.00131 -33.88464 -32.90839 -31.68491 -30.26620 -28.75524 -27.81290 -26.78030 -24.47095 -23.84021 -23.28021 -21.50862 -21.33021 -20.68156 -19.13302 -18.56550 -18.01584 -17.40428 -17.19071 -17.08479 -16.68460 -15.80081 -15.73585 -15.62699 -15.27825 -14.98218 -14.77527 -14.48513 -14.20921 -14.18940 -13.87543 -13.73692 -13.60917 -13.28780 -13.22508 -13.15898 -12.95604 -12.79276 -12.38556 -12.12581 -12.03377 -11.91234 -11.58166 -11.30638 -11.08076 -10.90569 -10.77141 -10.60419 -10.16075 -9.49482 -8.70909 -7.89794 -5.43468 0.23316 1.41900 1.48087 1.49444 1.59857 1.73293 2.24144 2.27294 2.48416 3.11313 3.28498 3.39565 3.62609 3.63716 3.84757 3.88425 3.94972 4.04110 4.21821 4.29424 4.36216 4.38993 4.53270 4.58179 4.65653 4.69980 4.72996 4.84214 4.91821 5.02330 5.04408 5.12398 5.14926 5.36265 5.40530 5.45772 5.61820 5.66667 6.05640 6.36711 6.43342 6.84546 6.89306 7.10599 7.11338 7.77101 8.31064 9.17084 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.028068 B = 0.003051 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.330214 B = 9176.531306 C = 9526.874887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.229 3.771 3 N -0.524 5.524 4 C 0.045 3.955 5 C -0.112 4.112 6 C 0.591 3.409 7 O -0.583 6.583 8 N -0.689 5.689 9 C 0.176 3.824 10 H 0.058 0.942 11 C -0.130 4.130 12 C 0.182 3.818 13 N -0.604 5.604 14 C -0.264 4.264 15 H 0.077 0.923 16 C -0.050 4.050 17 N -0.938 5.938 18 Si 0.973 3.027 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.294 1.294 22 C 0.118 3.882 23 C 0.102 3.898 24 H 0.076 0.924 25 O -0.571 6.571 26 N -0.431 5.431 27 C 0.063 3.937 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.200 0.800 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.056 0.944 35 H -0.008 1.008 36 H 0.063 0.937 37 H 0.250 0.750 38 H 0.012 0.988 39 H 0.077 0.923 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.259 10.549 -4.751 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 N -0.243 5.243 4 C -0.110 4.110 5 C -0.228 4.228 6 C 0.379 3.621 7 O -0.465 6.465 8 N -0.339 5.339 9 C 0.071 3.929 10 H 0.076 0.924 11 C -0.170 4.170 12 C 0.056 3.944 13 N -0.329 5.329 14 C -0.394 4.394 15 H 0.094 0.906 16 C -0.246 4.246 17 N -0.584 5.584 18 Si 0.800 3.200 19 H -0.184 1.184 20 H -0.219 1.219 21 H -0.221 1.221 22 C -0.008 4.008 23 C 0.041 3.959 24 H 0.094 0.906 25 O -0.378 6.378 26 N -0.112 5.112 27 C -0.078 4.078 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.216 0.784 32 H 0.251 0.749 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.010 0.990 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.030 0.970 39 H 0.096 0.904 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.140 0.860 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.144 9.876 -4.451 22.872 hybrid contribution 2.052 -0.778 0.395 2.230 sum -18.092 9.098 -4.056 20.653 Atomic orbital electron populations 1.20507 0.81070 1.05856 1.05382 1.24341 0.97614 0.80455 1.00848 1.70144 1.02443 1.29132 1.22604 1.23026 0.95897 0.91088 1.00957 1.20654 0.85545 0.95195 1.21438 1.17052 0.82876 0.86365 0.75807 1.90768 1.87303 1.15848 1.52585 1.45470 1.04367 1.10915 1.73164 1.20683 0.83224 0.93229 0.95743 0.92407 1.22349 0.98144 1.00753 0.95773 1.20536 0.86482 0.90936 0.96468 1.44216 1.07973 1.66918 1.13781 1.19595 0.91221 1.02690 1.25850 0.90585 1.26013 1.01295 0.94608 1.02637 1.70162 1.41288 1.06665 1.40248 0.85127 0.79231 0.77959 0.77636 1.18448 1.21865 1.22092 1.21691 0.95870 0.95890 0.87386 1.22324 0.92474 0.96727 0.84386 0.90637 1.86459 1.45449 1.77019 1.28894 1.45309 1.04704 1.09439 1.51744 1.22424 1.02859 0.77395 1.05115 0.88019 0.88299 0.88035 0.78355 0.74916 0.91192 0.92510 0.99036 0.91827 0.94036 0.96978 0.90448 0.75295 0.89244 0.85976 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.01 71.23 0.71 0.03 16 2 C 0.23 4.70 7.88 138.20 1.09 5.79 16 3 N -0.52 -12.98 11.20 -187.39 -2.10 -15.08 16 4 C 0.05 1.10 11.37 84.10 0.96 2.05 16 5 C -0.11 -3.08 6.91 40.01 0.28 -2.80 16 6 C 0.59 19.17 7.74 86.47 0.67 19.84 16 7 O -0.58 -22.85 14.51 -4.27 -0.06 -22.91 16 8 N -0.69 -20.35 4.90 -446.29 -2.19 -22.54 16 9 C 0.18 6.25 2.08 45.02 0.09 6.35 16 10 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 11 C -0.13 -5.17 5.65 30.67 0.17 -5.00 16 12 C 0.18 9.01 5.25 86.36 0.45 9.47 16 13 N -0.60 -29.56 2.99 -699.12 -2.09 -31.64 16 14 C -0.26 -13.91 9.58 84.03 0.81 -13.11 16 15 H 0.08 3.80 7.85 -2.91 -0.02 3.77 16 16 C -0.05 -2.74 5.06 84.86 0.43 -2.31 16 17 N -0.94 -55.35 11.04 21.65 0.24 -55.11 16 18 Si 0.97 43.78 29.57 68.60 2.03 45.81 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 C 0.12 4.65 6.14 86.36 0.53 5.19 16 23 C 0.10 3.23 3.14 30.67 0.10 3.33 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 O -0.57 -15.28 13.16 -148.98 -1.96 -17.24 16 26 N -0.43 -10.01 3.17 -524.92 -1.67 -11.67 16 27 C 0.06 1.12 10.27 127.77 1.31 2.44 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.53 7.79 -2.39 -0.02 0.51 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.20 3.60 7.46 -2.91 -0.02 3.58 16 32 H 0.41 9.62 7.55 -92.71 -0.70 8.92 16 33 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.06 2.32 8.08 -2.39 -0.02 2.30 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.06 3.53 6.11 -2.39 -0.01 3.52 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 2.76 7.94 -2.39 -0.02 2.75 16 40 H 0.40 6.92 9.08 -74.06 -0.67 6.25 16 41 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.12 1.17 7.87 -2.39 -0.02 1.16 16 43 H 0.08 1.93 6.37 -2.39 -0.02 1.92 16 Total: -1.00 -75.58 351.98 -0.53 -76.11 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.33 Total: 23.03 kcal Atomic # 6 Polarization: 23.66 SS G_CDS: 7.60 Total: 31.26 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -7.80 Total: -136.05 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -2.02 Total: -40.15 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.58 -0.53 -76.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090520332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.423 kcal (2) G-P(sol) polarization free energy of solvation -75.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds