Wall clock time and date at job start Fri Apr 10 2020 17:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30495 * 125.64688 * 2 1 4 4 C 1.34131 * 109.25155 * 180.02562 * 3 2 1 5 5 C 1.34665 * 108.02351 * 0.02562 * 4 3 2 6 6 N 1.35038 * 125.64641 * 179.69505 * 2 1 3 7 7 C 1.46495 * 126.40030 * 0.02562 * 6 2 1 8 8 C 1.50699 * 109.47164 * 85.00133 * 7 6 2 9 9 O 1.21284 * 120.00133 * 359.97438 * 8 7 6 10 10 N 1.34786 * 119.99861 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99722 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46289 * 324.96809 * 11 10 8 13 13 C 1.53035 * 109.46274 * 84.93142 * 11 10 8 14 14 C 1.53194 * 109.31246 * 181.38474 * 13 11 10 15 15 N 1.46927 * 108.77531 * 305.36183 * 14 13 11 16 16 C 1.36936 * 120.63027 * 233.58845 * 15 14 13 17 17 H 1.07994 * 120.00004 * 27.69483 * 16 15 14 18 18 C 1.38811 * 119.99576 * 207.70239 * 16 15 14 19 19 N 1.31618 * 120.00544 * 17.34931 * 18 16 15 20 20 Si 1.86800 * 119.99728 * 197.35723 * 18 16 15 21 21 H 1.48500 * 109.47524 * 59.99472 * 20 18 16 22 22 H 1.48503 * 109.47563 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.47118 * 299.99779 * 20 18 16 24 24 C 1.46922 * 118.73523 * 53.61430 * 15 14 13 25 25 C 1.53048 * 109.45985 * 205.00005 * 11 10 8 26 26 H 1.09005 * 109.49159 * 58.65912 * 25 11 10 27 27 O 1.42903 * 109.49195 * 298.56687 * 25 11 10 28 28 H 1.08999 * 109.47632 * 90.02269 * 1 2 3 29 29 H 1.08998 * 109.47046 * 330.02399 * 1 2 3 30 30 H 1.09002 * 109.47439 * 210.02935 * 1 2 3 31 31 H 1.08001 * 125.98653 * 180.02562 * 4 3 2 32 32 H 1.07997 * 126.59313 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47058 * 204.99913 * 7 6 2 34 34 H 1.08999 * 109.47104 * 324.99771 * 7 6 2 35 35 H 0.97000 * 119.99918 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.49686 * 301.33156 * 13 11 10 37 37 H 1.08997 * 109.49761 * 61.43149 * 13 11 10 38 38 H 1.09000 * 109.58571 * 185.57510 * 14 13 11 39 39 H 1.08998 * 109.58521 * 65.15337 * 14 13 11 40 40 H 0.96995 * 120.00177 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58508 * 186.60197 * 24 15 14 42 42 H 1.08994 * 109.70854 * 66.24581 * 24 15 14 43 43 H 0.96706 * 113.99339 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6818 -0.0006 5 6 3.5926 -0.6643 -0.0015 6 7 2.2940 -1.0973 0.0058 7 6 1.8424 -2.4909 0.0127 8 6 1.5704 -2.9378 -1.4005 9 8 1.7368 -2.1678 -2.3227 10 7 1.1411 -4.1929 -1.6396 11 6 0.8771 -4.6275 -3.0135 12 1 0.4746 -3.7928 -3.5875 13 6 2.1808 -5.1062 -3.6563 14 6 1.9074 -5.5272 -5.1036 15 7 0.8293 -6.5255 -5.1101 16 6 1.0018 -7.7345 -5.7296 17 1 1.9909 -8.1582 -5.8210 18 6 -0.0949 -8.4153 -6.2401 19 7 -1.2289 -7.7786 -6.4429 20 14 0.0386 -10.2353 -6.6392 21 1 0.3866 -10.9881 -5.4074 22 1 -1.2611 -10.7232 -7.1664 23 1 1.0965 -10.4417 -7.6608 24 6 -0.4373 -6.2017 -4.4398 25 6 -0.1376 -5.7731 -2.9999 26 1 -1.0578 -5.4383 -2.5208 27 8 0.4027 -6.8800 -2.2753 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 0.8902 0.5135 30 1 -0.3634 -0.8897 0.5143 31 1 4.4098 1.3411 -0.0003 32 1 4.4776 -1.2832 -0.0025 33 1 2.6163 -3.1215 0.4505 34 1 0.9295 -2.5741 0.6023 35 1 1.0076 -4.8086 -0.9020 36 1 2.9108 -4.2968 -3.6446 37 1 2.5710 -5.9568 -3.0975 38 1 2.8097 -5.9610 -5.5347 39 1 1.6035 -4.6574 -5.6860 40 1 -1.9952 -8.2545 -6.7993 41 1 -1.0821 -7.0805 -4.4327 42 1 -0.9347 -5.3878 -4.9672 43 1 -0.1884 -7.6438 -2.2258 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090813313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:44 Heat of formation + Delta-G solvation = -20.518629 kcal Electronic energy + Delta-G solvation = -26000.283527 eV Core-core repulsion = 22274.422460 eV Total energy + Delta-G solvation = -3725.861067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.08451 -41.05908 -39.46061 -36.49913 -35.78401 -34.99994 -33.91555 -32.62429 -31.40669 -30.76264 -28.95836 -27.66179 -26.72434 -24.18073 -23.61527 -22.37647 -21.85265 -21.16990 -20.53746 -19.20874 -18.42348 -18.22238 -17.37443 -17.05061 -16.65957 -16.47387 -16.16084 -15.64930 -15.43708 -15.28909 -15.16132 -14.81658 -14.66437 -14.44247 -13.95100 -13.82255 -13.67008 -13.55334 -13.30404 -13.16497 -13.05462 -12.79186 -12.62937 -12.39817 -12.26582 -12.05652 -11.86007 -11.53685 -11.35777 -10.97910 -10.76505 -10.58900 -10.46184 -10.08324 -9.26260 -8.69698 -7.88892 -5.33008 0.98515 1.47135 1.49222 1.50119 1.57611 1.70283 2.18662 2.25607 2.51248 3.23584 3.38301 3.55480 3.61355 3.69253 3.78171 3.86295 3.92292 4.00768 4.10664 4.32385 4.39162 4.46095 4.56523 4.57943 4.68559 4.72112 4.84871 4.86639 4.92012 5.02057 5.04007 5.16334 5.32079 5.40396 5.44078 5.55166 5.64204 5.84436 6.19103 6.35708 6.52369 6.91663 7.13655 7.15040 7.17207 7.81360 8.33967 9.17304 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.035718 B = 0.002922 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.739884 B = 9578.999395 C = 9721.585115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.202 3.798 3 N -0.536 5.536 4 C -0.056 4.056 5 C -0.050 4.050 6 N -0.444 5.444 7 C 0.088 3.912 8 C 0.493 3.507 9 O -0.576 6.576 10 N -0.698 5.698 11 C 0.171 3.829 12 H 0.069 0.931 13 C -0.118 4.118 14 C 0.143 3.857 15 N -0.598 5.598 16 C -0.257 4.257 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.283 1.283 24 C 0.148 3.852 25 C 0.093 3.907 26 H 0.074 0.926 27 O -0.560 6.560 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.183 0.817 32 H 0.201 0.799 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.420 0.580 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.006 0.994 40 H 0.251 0.749 41 H 0.073 0.927 42 H 0.001 0.999 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 6.952 18.899 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 N -0.256 5.256 4 C -0.203 4.203 5 C -0.182 4.182 6 N -0.127 5.127 7 C -0.037 4.037 8 C 0.278 3.722 9 O -0.454 6.454 10 N -0.350 5.350 11 C 0.066 3.934 12 H 0.087 0.913 13 C -0.158 4.158 14 C 0.017 3.983 15 N -0.321 5.321 16 C -0.387 4.387 17 H 0.079 0.921 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.209 1.209 24 C 0.021 3.979 25 C 0.032 3.968 26 H 0.091 0.909 27 O -0.366 6.366 28 H 0.088 0.912 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.200 0.800 32 H 0.218 0.782 33 H 0.177 0.823 34 H 0.176 0.824 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.019 0.981 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.521 8.499 18.246 20.434 hybrid contribution -0.182 -2.172 -0.899 2.358 sum 3.339 6.327 17.347 18.764 Atomic orbital electron populations 1.20298 0.83404 1.05440 1.03523 1.23782 0.96844 0.81425 1.04045 1.70186 1.03520 1.29740 1.22133 1.22640 0.94785 0.93997 1.08844 1.23130 0.87664 0.96936 1.10474 1.45023 1.06653 1.06748 1.54275 1.21985 1.07205 0.80649 0.93860 1.21377 0.76721 0.81922 0.92142 1.90796 1.52855 1.54522 1.47263 1.45862 1.66911 1.12858 1.09383 1.20649 0.95314 0.94529 0.82924 0.91270 1.22046 0.96762 1.00023 0.96964 1.20967 0.91812 0.91150 0.94374 1.44096 1.12199 1.14121 1.61644 1.19395 0.93828 0.95367 1.30152 0.92067 1.25693 0.96847 1.02460 0.99072 1.70154 1.03245 1.35852 1.48897 0.85356 0.76245 0.80757 0.78112 1.19962 1.22103 1.20887 1.21347 0.88244 0.98816 0.89490 1.22463 0.94673 0.86555 0.93083 0.90880 1.86304 1.48536 1.26661 1.75145 0.91162 0.88534 0.88168 0.80026 0.78242 0.82310 0.82382 0.74230 0.92751 0.91293 0.92755 0.97568 0.93966 0.90828 0.98108 0.76368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.19 71.24 0.73 -0.46 16 2 C 0.20 4.93 7.89 138.13 1.09 6.02 16 3 N -0.54 -15.63 11.25 -188.13 -2.12 -17.75 16 4 C -0.06 -1.39 11.87 83.52 0.99 -0.40 16 5 C -0.05 -1.04 11.58 83.08 0.96 -0.08 16 6 N -0.44 -9.12 2.24 -518.36 -1.16 -10.28 16 7 C 0.09 1.14 6.37 85.63 0.55 1.68 16 8 C 0.49 11.18 7.86 87.66 0.69 11.87 16 9 O -0.58 -19.71 16.08 -3.04 -0.05 -19.76 16 10 N -0.70 -15.14 5.05 -442.39 -2.23 -17.38 16 11 C 0.17 5.33 2.20 45.02 0.10 5.43 16 12 H 0.07 2.51 7.58 -2.39 -0.02 2.49 16 13 C -0.12 -4.12 5.51 30.67 0.17 -3.95 16 14 C 0.14 6.12 6.52 86.36 0.56 6.68 16 15 N -0.60 -28.87 2.94 -699.12 -2.05 -30.92 16 16 C -0.26 -13.68 9.59 84.03 0.81 -12.87 16 17 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 18 C -0.05 -2.42 4.91 84.86 0.42 -2.00 16 19 N -0.94 -52.64 11.19 21.65 0.24 -52.40 16 20 Si 0.97 42.99 29.59 68.60 2.03 45.02 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.15 6.49 4.95 86.36 0.43 6.92 16 25 C 0.09 2.96 3.38 30.67 0.10 3.07 16 26 H 0.07 1.95 8.14 -2.38 -0.02 1.94 16 27 O -0.56 -16.46 12.09 -148.98 -1.80 -18.26 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.05 7.16 -2.39 -0.02 1.03 16 31 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 33 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.16 0.87 7.21 -2.39 -0.02 0.85 16 35 H 0.42 6.49 8.26 -92.71 -0.77 5.73 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.07 2.45 7.61 -2.39 -0.02 2.43 16 38 H 0.05 2.30 7.93 -2.39 -0.02 2.28 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 41 H 0.07 3.57 6.04 -2.39 -0.01 3.55 16 42 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.39 9.80 9.08 -74.05 -0.67 9.13 16 Total: -1.00 -77.23 354.72 0.05 -77.19 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.40 Total: 22.64 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 7.59 Total: 21.90 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.32 Total: -128.73 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.85 Total: -38.02 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.23 0.05 -77.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090813313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.668 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds