Wall clock time and date at job start Fri Apr 10 2020 18:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.47103 * 2 1 4 4 N 1.31879 * 119.92915 * 90.00314 * 3 2 1 5 5 N 1.28276 * 122.62181 * 180.02562 * 4 3 2 6 6 C 1.32491 * 122.22227 * 359.97438 * 5 4 3 7 7 O 1.35444 * 120.25420 * 180.02562 * 6 5 4 8 8 C 1.40454 * 119.49173 * 0.02562 * 6 5 4 9 9 C 1.47816 * 121.18086 * 179.97438 * 8 6 5 10 10 O 1.21557 * 119.99897 * 89.99920 * 9 8 6 11 11 N 1.34777 * 120.00174 * 270.00561 * 9 8 6 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47030 * 180.02562 * 13 12 11 15 15 C 1.36943 * 119.99943 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99502 * 359.97438 * 15 14 13 17 17 C 1.38805 * 120.00174 * 179.97438 * 15 14 13 18 18 N 1.31616 * 120.00484 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47174 * 89.99722 * 19 17 15 21 21 H 1.48498 * 109.47352 * 209.99721 * 19 17 15 22 22 H 1.48501 * 109.47062 * 329.99771 * 19 17 15 23 23 C 1.38481 * 119.93098 * 270.26399 * 3 2 1 24 24 C 1.50701 * 121.06352 * 0.02562 * 23 3 2 25 25 C 1.52998 * 109.46885 * 270.22470 * 24 23 3 26 26 H 1.09000 * 109.47903 * 59.99890 * 1 2 3 27 27 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47370 * 299.99728 * 1 2 3 29 29 H 1.09004 * 109.46643 * 240.00197 * 2 1 3 30 30 H 1.08994 * 109.47342 * 120.00490 * 2 1 3 31 31 H 0.96695 * 114.00304 * 269.98163 * 7 6 5 32 32 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 34 34 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 35 35 H 1.09004 * 109.46930 * 299.99770 * 13 12 11 36 36 H 1.09004 * 109.47059 * 59.99372 * 13 12 11 37 37 H 0.96999 * 120.00085 * 359.97438 * 14 13 12 38 38 H 0.97000 * 120.00708 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47008 * 30.22251 * 24 23 3 40 40 H 1.08993 * 109.47241 * 150.22012 * 24 23 3 41 41 H 1.09001 * 109.47351 * 179.97438 * 25 24 23 42 42 H 1.09002 * 109.47118 * 299.99713 * 25 24 23 43 43 H 1.09002 * 109.47313 * 59.99770 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2517 2.0412 1.1429 5 7 2.6783 3.2494 1.2032 6 6 2.9310 3.9644 0.1168 7 8 3.3810 5.2372 0.2268 8 6 2.7287 3.3924 -1.1500 9 6 2.9980 4.1562 -2.3865 10 8 4.1014 4.1198 -2.8952 11 7 2.0203 4.8932 -2.9498 12 6 2.2874 5.6507 -4.1751 13 6 1.0200 6.3941 -4.6017 14 7 1.2870 7.1510 -5.8272 15 6 0.2935 7.8997 -6.3997 16 1 -0.6869 7.9318 -5.9478 17 6 0.5466 8.6174 -7.5605 18 7 -0.4083 9.3366 -8.1111 19 14 2.2423 8.5613 -8.3423 20 1 2.3012 7.4425 -9.3170 21 1 2.5066 9.8433 -9.0437 22 1 3.2669 8.3536 -7.2877 23 6 2.2574 2.0741 -1.2001 24 6 2.0076 1.3874 -2.5181 25 6 3.2812 0.6690 -2.9683 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.6789 5.9012 0.2586 32 1 1.1397 4.9221 -2.5441 33 1 3.0861 6.3694 -3.9910 34 1 2.5905 4.9657 -4.9670 35 1 0.2217 5.6750 -4.7859 36 1 0.7166 7.0789 -3.8098 37 1 2.1677 7.1225 -6.2327 38 1 -0.2314 9.8384 -8.9221 39 1 1.2025 0.6617 -2.4027 40 1 1.7245 2.1281 -3.2658 41 1 3.1004 0.1719 -3.9213 42 1 4.0862 1.3948 -3.0836 43 1 3.5642 -0.0718 -2.2204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128558480.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:19 Heat of formation + Delta-G solvation = -46.545924 kcal Electronic energy + Delta-G solvation = -25341.056686 eV Core-core repulsion = 21614.066991 eV Total energy + Delta-G solvation = -3726.989695 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.78718 -40.73872 -39.08078 -37.55567 -36.93485 -35.66554 -34.77163 -33.49286 -32.31138 -31.07460 -29.97663 -27.05069 -26.18555 -25.27557 -23.73558 -23.13420 -22.94209 -21.73633 -20.16078 -19.92839 -19.45674 -18.65593 -17.59137 -17.02488 -16.63530 -16.47140 -16.08510 -15.98480 -15.66507 -15.41247 -15.20275 -15.04606 -14.79598 -14.61199 -14.49229 -13.75353 -13.60618 -13.48357 -13.32391 -13.25484 -13.03756 -12.74361 -12.67147 -12.64092 -12.33240 -12.09694 -12.01023 -11.86639 -11.82662 -11.69821 -11.14311 -11.04641 -10.62514 -10.60601 -10.37362 -9.37292 -8.05613 -5.41264 -0.76622 -0.48134 1.12447 1.39550 1.41012 1.48156 1.68973 2.00258 2.19508 2.46486 2.86842 3.14716 3.16361 3.26626 3.46137 3.70336 3.74521 3.90217 3.97319 4.14327 4.15105 4.19449 4.31550 4.38769 4.42315 4.50102 4.56247 4.69250 4.89258 4.91752 4.93231 5.00646 5.05875 5.07700 5.15055 5.19287 5.26212 5.43606 5.72074 6.15602 6.18827 6.26895 6.83763 7.03264 7.39359 7.77201 7.94089 9.15126 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.002962 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.138618 B = 9451.989049 C = 9773.453174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C 0.071 3.929 4 N -0.223 5.223 5 N -0.280 5.280 6 C 0.285 3.715 7 O -0.479 6.479 8 C -0.155 4.155 9 C 0.580 3.420 10 O -0.555 6.555 11 N -0.695 5.695 12 C 0.122 3.878 13 C 0.150 3.850 14 N -0.758 5.758 15 C -0.237 4.237 16 H 0.064 0.936 17 C -0.059 4.059 18 N -0.980 5.980 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.253 1.253 23 C -0.013 4.013 24 C -0.095 4.095 25 C -0.149 4.149 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.427 0.573 32 H 0.417 0.583 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.367 0.633 38 H 0.259 0.741 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -22.466 17.118 28.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.075 4.075 4 N -0.066 5.066 5 N -0.131 5.131 6 C 0.098 3.902 7 O -0.288 6.288 8 C -0.170 4.170 9 C 0.364 3.636 10 O -0.432 6.432 11 N -0.347 5.347 12 C -0.002 4.002 13 C 0.024 3.976 14 N -0.405 5.405 15 C -0.368 4.368 16 H 0.082 0.918 17 C -0.251 4.251 18 N -0.630 5.630 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.223 1.223 22 H -0.177 1.177 23 C -0.025 4.025 24 C -0.132 4.132 25 C -0.207 4.207 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.290 0.710 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.200 0.800 38 H 0.068 0.932 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.053 0.947 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.103 -22.551 18.368 29.373 hybrid contribution 0.226 1.328 -1.933 2.357 sum 4.329 -21.223 16.434 27.189 Atomic orbital electron populations 1.21772 0.92434 1.03976 1.02300 1.20720 0.97687 0.86657 1.05995 1.23288 0.95832 1.00157 0.88206 1.72774 1.07293 1.00853 1.25707 1.73020 1.11120 1.02085 1.26871 1.20893 0.92333 0.88768 0.88183 1.84730 1.36838 1.12023 1.95168 1.21257 1.04077 0.97412 0.94295 1.17737 0.84248 0.78729 0.82848 1.90840 1.24265 1.64339 1.63763 1.45647 1.14649 1.47273 1.27160 1.21370 0.98042 0.94881 0.85949 1.20829 0.94835 0.93813 0.88153 1.42528 1.11339 1.57500 1.29103 1.18989 0.92500 1.19975 1.05299 0.91795 1.25473 1.01324 0.99439 0.98856 1.69862 1.34316 1.35934 1.22931 0.85474 0.80778 0.77011 0.78935 1.20243 1.22299 1.17738 1.21445 0.91322 0.90782 0.98978 1.20908 1.01213 1.00889 0.90223 1.21778 0.95519 1.00265 1.03105 0.91848 0.89295 0.93209 0.86991 0.88575 0.70981 0.74541 0.91631 0.91074 0.93691 0.94058 0.79981 0.93190 0.85543 0.90340 0.89511 0.94669 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.78 71.98 0.70 -0.29 16 2 C -0.07 -0.62 5.56 29.85 0.17 -0.46 16 3 C 0.07 1.18 6.11 42.61 0.26 1.44 16 4 N -0.22 -5.00 11.40 -47.73 -0.54 -5.54 16 5 N -0.28 -7.11 11.52 -169.57 -1.95 -9.06 16 6 C 0.28 6.71 7.88 85.13 0.67 7.39 16 7 O -0.48 -10.42 13.09 -87.41 -1.14 -11.57 16 8 C -0.16 -3.40 5.69 -19.75 -0.11 -3.51 16 9 C 0.58 14.60 5.62 86.78 0.49 15.09 16 10 O -0.55 -18.71 17.11 -3.89 -0.07 -18.78 16 11 N -0.70 -14.79 5.55 -465.98 -2.59 -17.38 16 12 C 0.12 3.30 5.79 86.38 0.50 3.80 16 13 C 0.15 4.85 6.37 86.38 0.55 5.40 16 14 N -0.76 -33.12 5.41 -343.45 -1.86 -34.98 16 15 C -0.24 -12.90 10.47 84.03 0.88 -12.02 16 16 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 17 C -0.06 -3.37 5.50 84.86 0.47 -2.90 16 18 N -0.98 -61.28 13.97 21.65 0.30 -60.98 16 19 Si 0.95 44.28 27.74 68.60 1.90 46.18 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 23 C -0.01 -0.23 5.22 -19.36 -0.10 -0.33 16 24 C -0.09 -1.17 5.07 29.85 0.15 -1.02 16 25 C -0.15 -1.97 9.78 71.98 0.70 -1.27 16 26 H 0.06 0.38 7.43 -2.39 -0.02 0.36 16 27 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.49 6.00 -2.38 -0.01 0.48 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.43 4.85 9.06 -74.06 -0.67 4.18 16 32 H 0.42 6.47 8.46 -92.71 -0.78 5.69 16 33 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.37 15.54 5.53 -92.71 -0.51 15.03 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.13 0.76 6.03 -2.39 -0.01 0.74 16 40 H 0.08 1.12 7.24 -2.39 -0.02 1.10 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.75 7.43 -2.39 -0.02 0.74 16 Total: -1.00 -78.07 362.18 -1.58 -79.64 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.96 Total: 21.16 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.33 Total: 11.30 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -6.64 Total: -127.95 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.21 Total: -30.34 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.90 Total: 46.18 kcal Total: -78.07 -1.58 -79.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128558480.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.097 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds