Wall clock time and date at job start Fri Apr 10 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35513 * 117.00044 * 2 1 4 4 C 1.39637 * 120.49240 * 180.02562 * 3 2 1 5 5 C 1.39147 * 118.20770 * 180.02562 * 4 3 2 6 6 C 1.48445 * 120.51642 * 179.97438 * 5 4 3 7 7 O 1.21477 * 120.00500 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99816 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99713 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47271 * 35.00090 * 9 8 6 11 11 C 1.52993 * 109.47002 * 274.99674 * 9 8 6 12 12 C 1.52998 * 109.46555 * 155.00057 * 9 8 6 13 13 C 1.52998 * 109.47384 * 294.99651 * 12 9 8 14 14 H 1.09003 * 109.47082 * 305.00221 * 13 12 9 15 15 C 1.52995 * 109.47443 * 185.00170 * 13 12 9 16 16 N 1.46498 * 109.47009 * 65.00045 * 13 12 9 17 17 C 1.36935 * 120.00239 * 204.99963 * 16 13 12 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 13 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 N 1.33276 * 118.96375 * 0.27330 * 5 4 3 26 26 C 1.31534 * 120.88512 * 359.44095 * 25 5 4 27 27 N 1.31886 * 121.98792 * 0.57423 * 26 25 5 28 28 H 1.09007 * 109.46695 * 300.00015 * 1 2 3 29 29 H 1.09000 * 109.47098 * 59.99243 * 1 2 3 30 30 H 1.08996 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08007 * 120.89554 * 359.97438 * 4 3 2 32 32 H 0.96995 * 119.99521 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.47749 * 300.00516 * 11 9 8 34 34 H 1.09001 * 109.47223 * 60.00644 * 11 9 8 35 35 H 1.09004 * 109.47405 * 180.02562 * 11 9 8 36 36 H 1.08997 * 109.46877 * 175.00041 * 12 9 8 37 37 H 1.08999 * 109.47306 * 55.00192 * 12 9 8 38 38 H 1.09003 * 109.46933 * 60.00266 * 15 13 12 39 39 H 1.09004 * 109.47411 * 179.97438 * 15 13 12 40 40 H 1.08996 * 109.47329 * 300.00343 * 15 13 12 41 41 H 0.97004 * 119.99747 * 25.00702 * 16 13 12 42 42 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 43 43 H 1.08003 * 119.00440 * 180.26680 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 3.4380 1.2925 -0.0005 5 6 4.0198 2.5565 0.0000 6 6 5.4967 2.7065 0.0001 7 8 6.2074 1.7213 -0.0009 8 7 6.0491 3.9359 0.0012 9 6 7.5067 4.0840 0.0006 10 1 7.9529 3.2839 -0.5899 11 6 8.0274 4.0089 1.4373 12 6 7.8815 5.4368 -0.6077 13 6 7.4714 5.4647 -2.0814 14 1 7.9189 4.6163 -2.5992 15 6 7.9569 6.7667 -2.7215 16 7 6.0121 5.3847 -2.1837 17 6 5.4316 4.8887 -3.3205 18 1 6.0495 4.5561 -4.1415 19 6 4.0489 4.8134 -3.4177 20 7 3.2960 5.2137 -2.4150 21 14 3.2570 4.1362 -4.9680 22 1 1.7797 4.1559 -4.8185 23 1 3.6481 4.9740 -6.1302 24 1 3.7137 2.7404 -5.1880 25 7 3.2305 3.6303 0.0066 26 6 1.9210 3.5058 0.0015 27 7 1.3314 2.3260 0.0010 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0481 0.4012 -0.0005 32 1 5.4817 4.7225 0.0023 33 1 7.5811 4.8091 2.0279 34 1 7.7603 3.0451 1.8707 35 1 9.1118 4.1195 1.4370 36 1 8.9583 5.5854 -0.5275 37 1 7.3640 6.2323 -0.0714 38 1 9.0426 6.8261 -2.6454 39 1 7.6651 6.7863 -3.7716 40 1 7.5094 7.6150 -2.2038 41 1 5.4572 5.6832 -1.4463 42 1 3.7072 5.5650 -1.6097 43 1 1.3103 4.3965 0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134388724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:00:32 Heat of formation + Delta-G solvation = -4.804991 kcal Electronic energy + Delta-G solvation = -26829.373392 eV Core-core repulsion = 23104.193720 eV Total energy + Delta-G solvation = -3725.179673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89285 -39.33136 -38.09249 -36.89059 -34.35065 -33.10500 -32.27920 -31.37119 -30.48357 -28.20888 -27.49953 -26.40192 -24.66432 -23.82430 -23.40331 -21.46137 -20.34533 -20.04603 -18.44172 -17.86410 -17.30069 -16.03585 -15.99205 -15.79876 -15.07244 -15.02138 -14.64544 -14.55954 -14.20694 -13.85487 -13.63806 -13.58281 -13.29508 -13.07430 -12.91159 -12.17400 -12.04407 -11.97294 -11.73857 -11.59649 -11.45515 -11.08987 -10.76619 -10.47844 -10.43125 -10.40183 -10.12443 -9.97639 -9.92531 -9.83364 -9.11844 -8.97358 -8.92278 -8.77870 -8.46239 -6.92108 -5.99229 -2.97439 0.98210 1.48891 2.95846 3.28190 3.52229 3.54803 3.64367 3.70324 4.31896 4.39565 4.55385 4.69226 5.00777 5.10630 5.26775 5.32167 5.34645 5.39405 5.42786 5.56791 5.58735 5.65777 5.68826 5.81322 5.90994 5.93584 5.96744 6.08328 6.18753 6.28733 6.35672 6.47452 6.51557 6.52533 6.81777 6.96628 7.04073 7.09346 7.36753 7.88569 8.00187 8.46002 8.68333 8.85597 9.32046 10.14259 10.29807 11.48918 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.006316 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.041466 B = 4432.001560 C = 6066.077832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.352 3.648 4 C -0.198 4.198 5 C 0.166 3.834 6 C 0.582 3.418 7 O -0.546 6.546 8 N -0.673 5.673 9 C 0.147 3.853 10 H 0.086 0.914 11 C -0.162 4.162 12 C -0.135 4.135 13 C 0.174 3.826 14 H 0.048 0.952 15 C -0.162 4.162 16 N -0.726 5.726 17 C -0.326 4.326 18 H 0.057 0.943 19 C -0.038 4.038 20 N -0.928 5.928 21 Si 1.065 2.935 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.301 1.301 25 N -0.473 5.473 26 C 0.359 3.641 27 N -0.571 5.571 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.411 0.589 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.043 0.957 41 H 0.363 0.637 42 H 0.262 0.738 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -3.190 8.554 9.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.210 6.210 3 C 0.164 3.836 4 C -0.222 4.222 5 C 0.020 3.980 6 C 0.366 3.634 7 O -0.424 6.424 8 N -0.325 5.325 9 C 0.043 3.957 10 H 0.104 0.896 11 C -0.221 4.221 12 C -0.173 4.173 13 C 0.064 3.936 14 H 0.066 0.934 15 C -0.223 4.223 16 N -0.371 5.371 17 C -0.457 4.457 18 H 0.075 0.925 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.898 3.102 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.229 1.229 25 N -0.193 5.193 26 C 0.071 3.929 27 N -0.302 5.302 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.173 0.827 32 H 0.250 0.750 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.198 0.802 42 H 0.074 0.926 43 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -0.603 -3.802 7.636 8.551 hybrid contribution 1.171 0.227 0.446 1.273 sum 0.568 -3.575 8.082 8.855 Atomic orbital electron populations 1.22897 0.77033 1.02874 1.02777 1.86208 1.23084 1.24248 1.87413 1.19906 0.89153 0.85049 0.89534 1.21726 0.92533 1.00372 1.07574 1.21304 0.94994 0.88666 0.93056 1.17575 0.85415 0.83902 0.76532 1.90712 1.61763 1.38426 1.51462 1.45809 1.07297 1.08078 1.71302 1.20912 0.80352 0.98642 0.95817 0.89619 1.22207 1.00857 1.02154 0.96855 1.22234 1.01239 0.95855 0.97988 1.20208 0.86250 0.95352 0.91749 0.93437 1.22405 0.98188 0.99866 1.01809 1.42462 0.99661 1.76788 1.18145 1.19891 0.92544 1.38648 0.94662 0.92451 1.25379 0.92333 1.01714 1.04278 1.70780 1.36632 1.44344 1.05607 0.83434 0.76222 0.75517 0.75019 1.21318 1.22527 1.22852 1.68344 1.06391 1.31814 1.12701 1.24482 0.88194 0.93032 0.87199 1.68009 1.42058 0.99432 1.20684 0.92183 0.91943 0.88630 0.82729 0.74965 0.92658 0.92296 0.91856 0.90549 0.91736 0.94561 0.92845 0.93746 0.80221 0.92579 0.78287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.41 101.05 1.05 1.51 16 2 O -0.31 -4.75 10.49 -18.23 -0.19 -4.94 16 3 C 0.35 6.26 7.54 -16.68 -0.13 6.13 16 4 C -0.20 -3.72 9.68 -38.72 -0.37 -4.09 16 5 C 0.17 3.33 6.79 -82.70 -0.56 2.77 16 6 C 0.58 11.88 7.79 -12.05 -0.09 11.78 16 7 O -0.55 -11.96 16.08 5.39 0.09 -11.87 16 8 N -0.67 -12.35 3.79 -54.56 -0.21 -12.56 16 9 C 0.15 2.36 2.57 -67.93 -0.17 2.19 16 10 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 11 C -0.16 -2.14 9.48 37.15 0.35 -1.78 16 12 C -0.13 -2.01 4.43 -26.73 -0.12 -2.13 16 13 C 0.17 3.28 2.89 -67.93 -0.20 3.09 16 14 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 15 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 16 N -0.73 -16.50 3.84 -53.43 -0.21 -16.71 16 17 C -0.33 -8.68 9.93 -15.06 -0.15 -8.83 16 18 H 0.06 1.59 7.83 -52.48 -0.41 1.17 16 19 C -0.04 -1.02 5.50 -17.43 -0.10 -1.12 16 20 N -0.93 -25.12 12.88 55.49 0.71 -24.41 16 21 Si 1.07 26.00 29.92 -169.99 -5.09 20.91 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 25 N -0.47 -9.30 8.28 -11.20 -0.09 -9.40 16 26 C 0.36 6.56 12.27 -92.30 -1.13 5.42 16 27 N -0.57 -10.15 9.36 -14.64 -0.14 -10.29 16 28 H 0.06 0.66 8.12 -51.92 -0.42 0.24 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.15 2.76 7.73 -52.48 -0.41 2.35 16 32 H 0.41 7.75 5.89 -40.82 -0.24 7.51 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.36 8.33 4.54 -40.82 -0.19 8.15 16 42 H 0.26 6.91 6.19 -40.82 -0.25 6.66 16 43 H 0.20 3.21 8.06 -52.48 -0.42 2.79 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -30.26 360.15 -7.13 -37.39 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.17 Total: 13.99 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.27 Total: 12.46 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: 0.07 Total: -73.36 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.10 Total: -16.82 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.09 Total: 20.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.26 -7.13 -37.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134388724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.590 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds