Wall clock time and date at job start Fri Apr 10 2020 17:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99828 * 2 1 4 4 C 1.50706 * 109.46702 * 179.97438 * 3 2 1 5 5 N 1.30444 * 125.98750 * 90.02559 * 4 3 2 6 6 N 1.39932 * 108.89992 * 179.97438 * 5 4 3 7 7 C 1.46501 * 125.75987 * 179.97438 * 6 5 4 8 8 C 1.34260 * 108.48844 * 0.02562 * 6 5 4 9 9 C 1.38040 * 107.41713 * 359.76586 * 8 6 5 10 10 C 1.47430 * 126.41461 * 180.25195 * 9 8 6 11 11 O 1.21612 * 119.99731 * 180.12550 * 10 9 8 12 12 N 1.34771 * 120.00332 * 0.13584 * 10 9 8 13 13 C 1.46503 * 120.00544 * 179.97438 * 12 10 9 14 14 H 1.09007 * 112.84526 * 23.80133 * 13 12 10 15 15 C 1.53777 * 113.61887 * 154.99523 * 13 12 10 16 16 C 1.53775 * 87.08246 * 139.98172 * 15 13 12 17 17 H 1.08997 * 113.61748 * 219.93688 * 16 15 13 18 18 N 1.46501 * 113.61408 * 89.11461 * 16 15 13 19 19 C 1.36939 * 120.00084 * 154.99718 * 18 16 15 20 20 H 1.08004 * 119.99462 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00132 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00022 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00023 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47370 * 89.99946 * 23 21 19 25 25 H 1.48500 * 109.47494 * 210.00235 * 23 21 19 26 26 H 1.48498 * 109.47244 * 330.00211 * 23 21 19 27 27 C 1.53782 * 113.61347 * 252.49813 * 13 12 10 28 28 H 1.09002 * 109.47018 * 59.99971 * 1 2 3 29 29 H 1.09002 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00778 * 1 2 3 31 31 H 1.09000 * 109.46890 * 59.99811 * 3 2 1 32 32 H 1.09000 * 109.47141 * 299.99454 * 3 2 1 33 33 H 1.09002 * 109.46683 * 90.02468 * 7 6 5 34 34 H 1.09001 * 109.47255 * 210.02871 * 7 6 5 35 35 H 1.08996 * 109.46992 * 330.03320 * 7 6 5 36 36 H 1.08003 * 126.28961 * 179.97438 * 8 6 5 37 37 H 0.97003 * 119.99829 * 359.97438 * 12 10 9 38 38 H 1.08991 * 113.61805 * 254.53631 * 15 13 12 39 39 H 1.09002 * 113.61131 * 25.43500 * 15 13 12 40 40 H 0.96994 * 120.00190 * 335.00939 * 18 16 15 41 41 H 0.96998 * 120.00210 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61577 * 334.56020 * 27 13 12 43 43 H 1.08999 * 113.61223 * 105.47115 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2771 1.1262 -1.0545 6 7 5.6103 1.0210 -0.6428 7 6 6.7747 0.9286 -1.5271 8 6 5.6424 1.0178 0.6994 9 6 4.3401 1.1256 1.1441 10 6 3.8957 1.1672 2.5493 11 8 2.7117 1.2623 2.8099 12 7 4.8016 1.0999 3.5448 13 6 4.3601 1.1418 4.9411 14 1 3.3271 0.8178 5.0683 15 6 5.3406 0.4711 5.9177 16 6 5.0435 1.6275 6.8869 17 1 5.9234 1.9875 7.4199 18 7 3.9059 1.3721 7.7740 19 6 3.8216 2.0130 8.9812 20 1 4.5937 2.7070 9.2791 21 6 2.7441 1.7706 9.8220 22 7 2.6629 2.3870 10.9821 23 14 1.4092 0.5697 9.3070 24 1 1.7628 -0.7943 9.7756 25 1 0.1151 0.9799 9.9089 26 1 1.2884 0.5687 7.8269 27 6 4.6836 2.4676 5.6500 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 7.1447 1.9302 -1.7464 34 1 7.5584 0.3510 -1.0368 35 1 6.4873 0.4361 -2.4560 36 1 6.5253 0.9476 1.3176 37 1 5.7460 1.0239 3.3369 38 1 5.0015 -0.4996 6.2791 39 1 6.3702 0.4547 5.5602 40 1 3.2125 0.7490 7.5063 41 1 1.9097 2.2180 11.5694 42 1 5.5336 2.9969 5.2194 43 1 3.8140 3.1084 5.7955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020310370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:08 Heat of formation + Delta-G solvation = 40.489417 kcal Electronic energy + Delta-G solvation = -25076.638057 eV Core-core repulsion = 21353.422497 eV Total energy + Delta-G solvation = -3723.215560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72037 -39.57480 -37.98237 -37.70436 -34.14776 -33.89246 -32.71930 -30.84476 -30.04686 -29.17235 -26.80327 -25.49342 -25.19532 -24.40191 -22.92530 -22.15801 -20.56597 -20.06225 -18.98782 -17.81868 -17.53602 -16.65444 -16.32686 -15.95113 -15.78941 -15.76127 -15.33111 -14.83322 -14.55977 -14.36358 -14.08467 -13.70291 -13.26868 -13.10610 -12.94933 -12.68426 -12.48247 -12.29917 -12.19548 -12.05351 -12.03182 -11.53049 -11.17222 -10.93201 -10.81742 -10.37246 -10.23313 -9.97097 -9.81599 -9.80933 -9.60085 -9.48210 -9.01218 -8.91928 -8.65632 -7.29117 -5.77820 -3.14375 1.23241 1.78160 1.97923 3.35274 3.41000 3.42726 3.46165 3.48805 3.81339 4.10075 4.27760 4.60143 4.60433 4.65193 4.84779 4.91724 4.92463 5.06367 5.11395 5.19350 5.23315 5.24195 5.31100 5.39663 5.43706 5.60160 5.64074 5.73584 5.79240 6.01730 6.09064 6.14275 6.30055 6.42130 6.55126 6.61306 6.72545 6.93912 7.01953 7.23798 7.69857 7.98927 8.41489 8.42641 9.19104 9.91650 10.10063 11.40049 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.003203 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.554310 B = 8738.901621 C =10081.239994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.130 3.870 5 N -0.282 5.282 6 N -0.360 5.360 7 C 0.097 3.903 8 C 0.095 3.905 9 C -0.268 4.268 10 C 0.590 3.410 11 O -0.536 6.536 12 N -0.716 5.716 13 C 0.125 3.875 14 H 0.111 0.889 15 C -0.166 4.166 16 C 0.177 3.823 17 H 0.077 0.923 18 N -0.730 5.730 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.274 1.274 27 C -0.182 4.182 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.185 0.815 37 H 0.392 0.608 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -3.771 -27.320 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.062 3.938 4 C -0.038 4.038 5 N -0.105 5.105 6 N -0.139 5.139 7 C -0.044 4.044 8 C -0.056 4.056 9 C -0.283 4.283 10 C 0.376 3.624 11 O -0.413 6.413 12 N -0.366 5.366 13 C 0.021 3.979 14 H 0.129 0.871 15 C -0.206 4.206 16 C 0.064 3.936 17 H 0.095 0.905 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.189 4.189 22 N -0.579 5.579 23 Si 0.711 3.289 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.200 1.200 27 C -0.224 4.224 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.202 0.798 37 H 0.226 0.774 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.197 0.803 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.083 -3.750 -28.251 29.623 hybrid contribution -0.535 -0.632 0.362 0.904 sum 7.548 -4.382 -27.889 29.223 Atomic orbital electron populations 1.22738 0.80397 1.02837 1.00209 1.87886 1.20003 1.26564 1.95507 1.20709 0.84780 0.86004 1.02303 1.21950 0.95702 0.96976 0.89135 1.77168 0.86340 1.24477 1.22561 1.48306 1.06339 1.54338 1.04873 1.22018 0.83799 1.03808 0.94794 1.23081 0.98925 0.98389 0.85188 1.20352 0.92092 1.21025 0.94816 1.17245 0.85829 0.75927 0.83359 1.90763 1.16514 1.49971 1.84079 1.45912 1.09214 1.75067 1.06359 1.22636 0.99788 0.98136 0.77303 0.87104 1.23914 0.98715 1.00392 0.97530 1.20858 0.91573 0.92532 0.88620 0.90542 1.42549 1.23620 1.52040 1.18785 1.19088 1.07075 1.19854 0.91752 0.88985 1.24668 0.98284 0.99638 0.96289 1.69696 1.32162 1.45718 1.10318 0.86593 0.82497 0.81599 0.78205 1.20979 1.21601 1.20009 1.24283 1.01808 0.97058 0.99285 0.94191 0.89579 0.93370 0.89057 0.92116 0.90098 0.88888 0.88802 0.79782 0.77416 0.90962 0.89959 0.80342 0.92975 0.90888 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.44 10.69 -35.23 -0.38 -5.81 16 3 C 0.14 1.85 5.98 36.01 0.22 2.07 16 4 C 0.13 1.78 6.89 -82.02 -0.57 1.21 16 5 N -0.28 -3.54 12.50 33.90 0.42 -3.12 16 6 N -0.36 -3.21 3.98 -67.60 -0.27 -3.48 16 7 C 0.10 0.37 11.44 59.85 0.68 1.05 16 8 C 0.09 0.82 10.99 -16.56 -0.18 0.64 16 9 C -0.27 -3.41 6.13 -105.07 -0.64 -4.05 16 10 C 0.59 8.85 7.81 -12.52 -0.10 8.75 16 11 O -0.54 -10.16 14.51 5.27 0.08 -10.08 16 12 N -0.72 -9.05 5.34 -54.09 -0.29 -9.34 16 13 C 0.13 1.95 4.12 -67.12 -0.28 1.68 16 14 H 0.11 2.08 7.46 -51.93 -0.39 1.70 16 15 C -0.17 -2.40 7.58 -25.92 -0.20 -2.59 16 16 C 0.18 3.26 4.56 -67.12 -0.31 2.95 16 17 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.73 -17.17 5.11 -52.64 -0.27 -17.44 16 19 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 20 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 23 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.27 -6.71 6.52 56.52 0.37 -6.34 16 27 C -0.18 -3.03 7.68 -25.92 -0.20 -3.23 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.30 6.54 -51.93 -0.34 0.96 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.19 0.74 7.46 -52.48 -0.39 0.35 16 37 H 0.39 3.44 7.65 -40.82 -0.31 3.13 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 40 H 0.36 8.55 5.76 -40.82 -0.24 8.31 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 363.58 15.07 5.48 5.48 Total: -1.00 -37.60 363.58 -6.20 -43.80 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.33 Total: 7.84 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.71 Total: 2.96 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.37 Total: -61.89 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.30 Total: -15.89 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.60 -6.20 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020310370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.287 kcal (2) G-P(sol) polarization free energy of solvation -37.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds