Wall clock time and date at job start Fri Apr 10 2020 17:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47394 * 2 1 4 4 C 1.50696 * 109.47124 * 120.00210 * 2 1 3 5 5 N 1.31070 * 126.66115 * 299.95312 * 4 2 1 6 6 N 1.28832 * 107.99232 * 180.02562 * 5 4 2 7 7 N 1.28743 * 109.40074 * 359.73373 * 6 5 4 8 8 N 1.29015 * 108.80253 * 0.44056 * 7 6 5 9 9 C 1.46499 * 126.43743 * 179.83257 * 8 7 6 10 10 C 1.50697 * 109.47133 * 269.68987 * 9 8 7 11 11 O 1.21275 * 120.00030 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00091 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99995 * 179.97438 * 12 10 9 14 14 H 1.09000 * 112.84837 * 23.80117 * 13 12 10 15 15 C 1.53784 * 113.61347 * 154.99569 * 13 12 10 16 16 C 1.53784 * 87.08042 * 89.19936 * 15 13 12 17 17 H 1.09001 * 113.61439 * 270.80415 * 16 15 13 18 18 N 1.46499 * 113.61690 * 139.97693 * 16 15 13 19 19 C 1.36935 * 119.99942 * 154.99904 * 18 16 15 20 20 H 1.07999 * 120.00083 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99632 * 180.02562 * 19 18 16 22 22 N 1.31617 * 120.00227 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99548 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47399 * 299.99577 * 23 21 19 26 26 H 1.48498 * 109.47295 * 60.00184 * 23 21 19 27 27 C 1.53782 * 113.68907 * 252.53103 * 13 12 10 28 28 H 1.08998 * 109.46970 * 300.00245 * 1 2 3 29 29 H 1.09007 * 109.47396 * 59.99839 * 1 2 3 30 30 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46664 * 239.99992 * 2 1 3 32 32 H 1.08998 * 109.47263 * 59.99934 * 3 2 1 33 33 H 1.09004 * 109.47420 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46980 * 300.00415 * 3 2 1 35 35 H 1.09007 * 109.47419 * 149.68563 * 9 8 7 36 36 H 1.09002 * 109.47246 * 29.69201 * 9 8 7 37 37 H 0.97002 * 119.99915 * 359.97438 * 12 10 9 38 38 H 1.08996 * 113.61383 * 334.65254 * 15 13 12 39 39 H 1.08991 * 113.61446 * 203.74924 * 15 13 12 40 40 H 0.96999 * 119.99980 * 335.00973 * 18 16 15 41 41 H 0.97000 * 120.00284 * 359.97438 * 22 21 19 42 42 H 1.09003 * 113.61105 * 156.32361 * 27 13 12 43 43 H 1.08997 * 113.61173 * 25.42684 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7982 -0.3780 2.4764 6 7 2.3996 -1.2282 3.2349 7 7 3.0068 -2.0978 2.5050 8 7 2.8089 -1.8093 1.2632 9 6 3.3270 -2.5434 0.1062 10 6 4.6650 -1.9752 -0.2914 11 8 5.1388 -1.0479 0.3303 12 7 5.3345 -2.4967 -1.3384 13 6 6.6349 -1.9439 -1.7252 14 1 7.1394 -1.4347 -0.9041 15 6 7.5316 -2.9443 -2.4735 16 6 6.8750 -2.4424 -3.7704 17 1 5.9733 -2.9904 -4.0437 18 7 7.8136 -2.2987 -4.8860 19 6 7.3596 -2.3681 -6.1760 20 1 6.3096 -2.5285 -6.3710 21 6 8.2492 -2.2325 -7.2330 22 7 9.5288 -2.0366 -6.9953 23 14 7.6297 -2.3265 -8.9928 24 1 8.7697 -2.1534 -9.9287 25 1 6.9963 -3.6495 -9.2246 26 1 6.6311 -1.2521 -9.2242 27 6 6.5960 -1.1256 -3.0266 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 2.6299 -2.4483 -0.7265 36 1 3.4418 -3.5959 0.3653 37 1 4.9553 -3.2382 -1.8359 38 1 7.3077 -3.9865 -2.2458 39 1 8.5947 -2.7140 -2.4049 40 1 8.7567 -2.1545 -4.7108 41 1 9.8503 -1.9866 -6.0815 42 1 7.4034 -0.3980 -3.1091 43 1 5.6169 -0.6995 -3.2453 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020702497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:13 Heat of formation + Delta-G solvation = 110.857499 kcal Electronic energy + Delta-G solvation = -25250.716024 eV Core-core repulsion = 21562.844605 eV Total energy + Delta-G solvation = -3687.871420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.42927 -40.43371 -38.43610 -36.51587 -35.62935 -34.54066 -33.11919 -31.71897 -30.07553 -29.10260 -27.61198 -25.40114 -24.74132 -24.58881 -23.65546 -22.56810 -21.55520 -20.83330 -19.33582 -18.36036 -17.97654 -17.45317 -16.62667 -16.29494 -15.75168 -15.68043 -15.27331 -14.93164 -14.42564 -14.06767 -13.78688 -13.66527 -13.63456 -13.26023 -13.17617 -12.60226 -12.53208 -12.32552 -12.15992 -12.05981 -11.75342 -11.72631 -11.61138 -11.58203 -11.20373 -10.94927 -10.71339 -10.51044 -10.38623 -10.24647 -10.13299 -10.03803 -9.32672 -9.17877 -9.00310 -7.18703 -6.23472 -3.24968 0.92446 1.50027 2.02872 2.05947 2.71358 3.42999 3.45922 3.52834 3.63993 3.76573 4.04004 4.09116 4.27942 4.54123 4.56614 4.65458 4.73680 4.79439 4.92456 5.14961 5.17565 5.23162 5.32651 5.33540 5.42286 5.45578 5.49301 5.58855 5.67081 5.75649 5.77969 5.81973 5.89512 5.97557 6.04181 6.15883 6.33816 6.38811 6.78662 7.07854 7.65937 7.72285 8.39934 8.61865 9.07161 9.93600 10.07673 11.24353 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.002700 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.196830 B =10367.793393 C =11100.656712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.145 4.145 4 C 0.205 3.795 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.087 5.087 8 N -0.295 5.295 9 C 0.091 3.909 10 C 0.501 3.499 11 O -0.520 6.520 12 N -0.695 5.695 13 C 0.116 3.884 14 H 0.098 0.902 15 C -0.160 4.160 16 C 0.173 3.827 17 H 0.076 0.924 18 N -0.723 5.723 19 C -0.341 4.341 20 H 0.065 0.935 21 C -0.042 4.042 22 N -0.940 5.940 23 Si 1.080 2.920 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.175 4.175 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.405 0.595 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.369 0.631 41 H 0.256 0.744 42 H 0.086 0.914 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.226 -0.841 12.148 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.072 5.072 8 N -0.095 5.095 9 C -0.035 4.035 10 C 0.283 3.717 11 O -0.395 6.395 12 N -0.347 5.347 13 C 0.011 3.989 14 H 0.116 0.884 15 C -0.200 4.200 16 C 0.060 3.940 17 H 0.094 0.906 18 N -0.362 5.362 19 C -0.472 4.472 20 H 0.083 0.917 21 C -0.240 4.240 22 N -0.584 5.584 23 Si 0.910 3.090 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.217 4.217 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.240 0.760 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.491 -0.319 12.328 20.592 hybrid contribution -0.219 -0.513 0.480 0.735 sum -16.710 -0.832 12.808 21.070 Atomic orbital electron populations 1.21855 0.91858 1.02677 1.03798 1.19816 0.97367 0.96693 0.89475 1.21835 1.02054 0.92927 1.03462 1.26113 0.94617 0.88604 0.98021 1.74950 1.20652 1.20934 0.98336 1.78599 1.06865 0.98823 1.22409 1.78886 1.19187 1.21927 0.87193 1.47842 1.33944 1.20919 1.06818 1.22009 0.96237 0.98769 0.86501 1.20232 0.86195 0.84043 0.81189 1.90825 1.68054 1.27893 1.52701 1.45556 1.21189 1.36725 1.31181 1.21896 0.82605 0.97043 0.97383 0.88387 1.23893 1.00010 0.98282 0.97824 1.21561 0.93377 0.93084 0.85941 0.90622 1.42407 1.05812 1.86189 1.01813 1.20063 0.94924 1.47996 0.84171 0.91658 1.25821 0.94535 0.99891 1.03766 1.70895 1.13684 1.51981 1.21871 0.83251 0.74832 0.75856 0.75067 1.20943 1.22177 1.22164 1.24321 1.01948 1.00505 0.94933 0.90925 0.90647 0.92389 0.89076 0.91060 0.91827 0.90746 0.84169 0.83813 0.76035 0.91451 0.88986 0.79699 0.93303 0.89530 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.18 37.16 0.34 -0.49 16 2 C -0.01 -0.09 3.26 -91.78 -0.30 -0.39 16 3 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 4 C 0.20 2.25 6.64 -155.43 -1.03 1.22 16 5 N -0.30 -4.15 12.36 32.70 0.40 -3.75 16 6 N -0.07 -1.12 13.43 60.35 0.81 -0.31 16 7 N -0.09 -1.20 13.29 60.35 0.80 -0.40 16 8 N -0.29 -3.20 2.83 -59.44 -0.17 -3.37 16 9 C 0.09 0.60 6.57 -5.20 -0.03 0.57 16 10 C 0.50 5.21 7.90 -10.98 -0.09 5.12 16 11 O -0.52 -8.04 16.03 5.56 0.09 -7.95 16 12 N -0.70 -6.58 5.27 -53.01 -0.28 -6.86 16 13 C 0.12 1.48 4.32 -67.12 -0.29 1.19 16 14 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 15 C -0.16 -2.21 7.58 -25.92 -0.20 -2.40 16 16 C 0.17 2.96 4.36 -67.12 -0.29 2.67 16 17 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 18 N -0.72 -16.71 5.40 -52.64 -0.28 -17.00 16 19 C -0.34 -8.99 9.97 -15.06 -0.15 -9.15 16 20 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 21 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 22 N -0.94 -28.01 13.70 55.49 0.76 -27.25 16 23 Si 1.08 24.65 29.92 -169.99 -5.09 19.57 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.17 -2.70 7.68 -25.92 -0.20 -2.90 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.51 6.85 -51.93 -0.36 0.15 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.14 0.36 7.13 -51.93 -0.37 -0.02 16 36 H 0.14 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.40 2.61 8.70 -40.82 -0.36 2.25 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.37 8.89 6.76 -40.82 -0.28 8.62 16 41 H 0.26 7.47 6.77 -40.82 -0.28 7.20 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -36.41 364.81 -5.75 -42.15 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.30 Total: 6.32 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.99 Total: -6.66 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 2.04 Total: -58.93 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.09 Total: 19.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.41 -5.75 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020702497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.010 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds