Wall clock time and date at job start Fri Apr 10 2020 17:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99900 * 2 1 4 4 C 1.53005 * 109.47412 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47366 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.87916 * 124.97589 * 5 4 3 7 7 C 1.35373 * 107.22482 * 179.76348 * 6 5 4 8 8 C 1.41503 * 105.50095 * 0.35936 * 7 6 5 9 9 C 1.47708 * 126.51790 * 179.90656 * 8 7 6 10 10 O 1.21575 * 120.00055 * 359.70656 * 9 8 7 11 11 N 1.34779 * 120.00425 * 179.70687 * 9 8 7 12 12 C 1.46495 * 120.00274 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.90714 * 336.25191 * 12 11 9 14 14 C 1.53779 * 113.61190 * 107.50667 * 12 11 9 15 15 C 1.53782 * 87.08376 * 139.98158 * 14 12 11 16 16 H 1.09007 * 113.69034 * 89.11986 * 15 14 12 17 17 N 1.46496 * 113.61660 * 220.02143 * 15 14 12 18 18 C 1.36945 * 119.99718 * 252.49423 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.53784 * 113.61463 * 205.00198 * 12 11 9 27 27 N 1.28462 * 124.88513 * 304.97430 * 5 4 3 28 28 H 1.09003 * 109.46855 * 59.99909 * 1 2 3 29 29 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47484 * 300.00363 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99631 * 3 2 1 32 32 H 1.09002 * 109.47664 * 299.99825 * 3 2 1 33 33 H 1.08997 * 109.46686 * 59.99646 * 4 3 2 34 34 H 1.09002 * 109.46612 * 300.00529 * 4 3 2 35 35 H 1.07996 * 126.38768 * 0.03448 * 6 5 4 36 36 H 1.08000 * 127.25071 * 180.24170 * 7 6 5 37 37 H 0.96995 * 119.99414 * 0.02562 * 11 9 8 38 38 H 1.08995 * 113.61453 * 25.43277 * 14 12 11 39 39 H 1.09003 * 113.61291 * 254.52998 * 14 12 11 40 40 H 0.96996 * 120.00499 * 72.49153 * 17 15 14 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61528 * 105.47154 * 26 12 11 43 43 H 1.08996 * 113.61354 * 334.57143 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0251 2.9708 0.9078 7 6 5.3389 4.2430 0.5676 8 6 4.5732 4.5252 -0.5884 9 6 4.5598 5.7932 -1.3459 10 8 5.2521 6.7248 -0.9841 11 7 3.7801 5.9175 -2.4382 12 6 3.7664 7.1752 -3.1892 13 1 4.0686 8.0322 -2.5871 14 6 4.4862 7.0907 -4.5455 15 6 3.3504 7.9579 -5.1136 16 1 3.5376 9.0291 -5.0384 17 7 2.9125 7.5493 -6.4505 18 6 3.2294 8.3172 -7.5392 19 1 3.8017 9.2242 -7.4121 20 6 2.8150 7.9299 -8.8061 21 7 2.1170 6.8247 -8.9610 22 14 3.2467 8.9777 -10.2911 23 1 2.6922 8.3505 -11.5175 24 1 2.6685 10.3352 -10.1239 25 1 4.7232 9.0801 -10.4123 26 6 2.4685 7.4058 -3.9811 27 7 3.8786 3.4394 -0.8641 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 5.4197 2.4159 1.7460 36 1 6.0271 4.9041 1.0733 37 1 3.2275 5.1743 -2.7266 38 1 4.5166 6.0837 -4.9616 39 1 5.4584 7.5834 -4.5553 40 1 2.3982 6.7349 -6.5647 41 1 1.8271 6.5543 -9.8463 42 1 1.8118 8.1529 -3.5353 43 1 1.9474 6.4850 -4.2429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022410103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:28 Heat of formation + Delta-G solvation = 35.700177 kcal Electronic energy + Delta-G solvation = -24342.889750 eV Core-core repulsion = 20619.466513 eV Total energy + Delta-G solvation = -3723.423237 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90497 -39.60861 -38.49133 -37.77779 -34.31821 -34.02363 -32.66108 -30.94841 -30.05780 -29.57744 -26.90793 -25.21538 -25.06461 -24.10687 -22.85325 -21.72582 -21.40299 -20.04110 -19.21994 -18.08445 -17.26864 -17.03254 -16.71616 -16.45045 -16.14010 -15.88468 -15.21719 -14.73841 -14.47823 -14.38638 -14.16833 -13.94716 -13.60831 -13.38159 -12.99886 -12.76651 -12.54092 -12.16384 -12.06391 -11.86149 -11.85778 -11.24213 -11.10465 -10.89109 -10.63307 -10.48355 -10.28959 -10.26704 -10.07850 -9.85520 -9.58037 -9.51799 -9.31342 -8.87434 -8.66605 -6.95689 -5.77594 -3.06331 1.42424 1.91351 1.97046 3.22273 3.40428 3.44940 3.46698 3.49425 3.50534 4.01642 4.30761 4.48508 4.52024 4.60724 4.64973 4.83859 4.87364 4.98448 5.08758 5.11523 5.20618 5.23380 5.28543 5.41973 5.45121 5.51005 5.56286 5.90565 5.99046 6.13474 6.19718 6.30453 6.36709 6.40791 6.51787 6.57788 6.66795 6.79499 7.11697 7.53661 7.70829 7.81728 8.34515 8.41071 9.52189 10.09351 10.43947 11.44816 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002582 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.168429 B =10843.622655 C =12302.958658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.009 4.009 9 C 0.601 3.399 10 O -0.538 6.538 11 N -0.699 5.699 12 C 0.117 3.883 13 H 0.111 0.889 14 C -0.176 4.176 15 C 0.169 3.831 16 H 0.081 0.919 17 N -0.710 5.710 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.158 4.158 27 N -0.261 5.261 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.183 0.817 36 H 0.164 0.836 37 H 0.405 0.595 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.067 0.933 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 -13.980 23.774 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.073 5.073 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.170 4.170 9 C 0.385 3.615 10 O -0.413 6.413 11 N -0.349 5.349 12 C 0.012 3.988 13 H 0.129 0.871 14 C -0.218 4.218 15 C 0.056 3.944 16 H 0.098 0.902 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.212 1.212 25 H -0.212 1.212 26 C -0.198 4.198 27 N -0.097 5.097 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.240 0.760 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.112 -13.900 23.089 26.951 hybrid contribution 0.186 0.203 -0.391 0.478 sum 0.074 -13.697 22.699 26.511 Atomic orbital electron populations 1.22806 0.79652 1.03243 1.00601 1.87768 1.20816 1.26625 1.95643 1.22650 0.92084 0.85683 1.02434 1.21682 0.93136 0.78520 1.06258 1.45306 1.31398 1.11535 1.19038 1.22883 0.97947 0.96683 0.98385 1.21813 1.04399 0.96005 0.98385 1.22108 1.01351 0.94094 0.99456 1.16922 0.79917 0.84754 0.79905 1.90780 1.42427 1.39289 1.68848 1.45921 1.44630 1.16970 1.27362 1.22554 0.98716 0.86256 0.91246 0.87097 1.24337 1.00333 1.02507 0.94622 1.21355 0.91795 0.96477 0.84756 0.90151 1.42355 1.63935 1.28076 1.00453 1.19279 1.28343 1.03885 0.85964 0.91016 1.24764 1.00700 0.97819 0.97630 1.69653 1.42094 1.24105 1.22334 0.86250 0.77940 0.79513 0.82388 1.21718 1.21201 1.21212 1.23866 0.96260 1.01832 0.97857 1.73506 1.22872 0.97732 1.15547 0.93385 0.89067 0.93782 0.92491 0.91071 0.87778 0.86943 0.79989 0.81872 0.75989 0.90177 0.92135 0.78086 0.93430 0.91439 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -2.96 10.70 -35.23 -0.38 -3.34 16 3 C 0.05 0.34 6.04 37.16 0.22 0.57 16 4 C 0.12 0.76 6.77 -4.04 -0.03 0.74 16 5 N -0.28 -2.56 3.41 -61.33 -0.21 -2.77 16 6 C -0.02 -0.14 11.40 -17.16 -0.20 -0.33 16 7 C -0.18 -1.94 10.81 -39.36 -0.43 -2.37 16 8 C -0.01 -0.12 7.13 -82.76 -0.59 -0.71 16 9 C 0.60 9.47 7.83 -12.39 -0.10 9.37 16 10 O -0.54 -9.94 16.53 5.30 0.09 -9.86 16 11 N -0.70 -10.38 5.35 -54.00 -0.29 -10.67 16 12 C 0.12 1.86 4.24 -67.12 -0.28 1.58 16 13 H 0.11 1.80 7.47 -51.93 -0.39 1.41 16 14 C -0.18 -3.21 7.68 -25.92 -0.20 -3.41 16 15 C 0.17 3.36 4.48 -67.12 -0.30 3.06 16 16 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 17 N -0.71 -17.81 5.40 -52.64 -0.28 -18.10 16 18 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.16 -2.59 7.58 -25.92 -0.20 -2.79 16 27 N -0.26 -3.14 11.36 33.42 0.38 -2.76 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.11 0.38 8.04 -51.93 -0.42 -0.04 16 35 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.41 5.51 8.45 -40.82 -0.35 5.16 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.39 10.18 7.92 -40.82 -0.32 9.86 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -34.24 370.66 -7.14 -41.38 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.51 Total: 10.97 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.23 Total: -0.41 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.32 Total: -61.77 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.29 Total: -13.19 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.24 -7.14 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022410103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.079 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds