Wall clock time and date at job start Fri Apr 10 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99900 * 2 1 4 4 C 1.53005 * 109.47412 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47366 * 179.97438 * 4 3 2 6 6 C 1.35034 * 124.87916 * 124.97589 * 5 4 3 7 7 C 1.35373 * 107.22482 * 179.76348 * 6 5 4 8 8 C 1.41503 * 105.50095 * 0.35936 * 7 6 5 9 9 C 1.47708 * 126.51790 * 179.90656 * 8 7 6 10 10 O 1.21575 * 120.00055 * 359.70656 * 9 8 7 11 11 N 1.34779 * 120.00425 * 179.70687 * 9 8 7 12 12 C 1.46495 * 120.00274 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.90714 * 336.25191 * 12 11 9 14 14 C 1.53779 * 113.61190 * 107.50667 * 12 11 9 15 15 C 1.53782 * 87.08376 * 139.98158 * 14 12 11 16 16 H 1.09007 * 113.69034 * 89.11986 * 15 14 12 17 17 N 1.46496 * 113.61660 * 220.02143 * 15 14 12 18 18 C 1.36945 * 119.99718 * 252.49423 * 17 15 14 19 19 H 1.07997 * 119.99756 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99878 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18 25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18 26 26 C 1.53784 * 113.61463 * 205.00198 * 12 11 9 27 27 N 1.28462 * 124.88513 * 304.97430 * 5 4 3 28 28 H 1.09003 * 109.46855 * 59.99909 * 1 2 3 29 29 H 1.08997 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47484 * 300.00363 * 1 2 3 31 31 H 1.09003 * 109.47448 * 59.99631 * 3 2 1 32 32 H 1.09002 * 109.47664 * 299.99825 * 3 2 1 33 33 H 1.08997 * 109.46686 * 59.99646 * 4 3 2 34 34 H 1.09002 * 109.46612 * 300.00529 * 4 3 2 35 35 H 1.07996 * 126.38768 * 0.03448 * 6 5 4 36 36 H 1.08000 * 127.25071 * 180.24170 * 7 6 5 37 37 H 0.96995 * 119.99414 * 0.02562 * 11 9 8 38 38 H 1.08995 * 113.61453 * 25.43277 * 14 12 11 39 39 H 1.09003 * 113.61291 * 254.52998 * 14 12 11 40 40 H 0.96996 * 120.00499 * 72.49153 * 17 15 14 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.61528 * 105.47154 * 26 12 11 43 43 H 1.08996 * 113.61354 * 334.57143 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0251 2.9708 0.9078 7 6 5.3389 4.2430 0.5676 8 6 4.5732 4.5252 -0.5884 9 6 4.5598 5.7932 -1.3459 10 8 5.2521 6.7248 -0.9841 11 7 3.7801 5.9175 -2.4382 12 6 3.7664 7.1752 -3.1892 13 1 4.0686 8.0322 -2.5871 14 6 4.4862 7.0907 -4.5455 15 6 3.3504 7.9579 -5.1136 16 1 3.5376 9.0291 -5.0384 17 7 2.9125 7.5493 -6.4505 18 6 3.2294 8.3172 -7.5392 19 1 3.8017 9.2242 -7.4121 20 6 2.8150 7.9299 -8.8061 21 7 2.1170 6.8247 -8.9610 22 14 3.2467 8.9777 -10.2911 23 1 2.6922 8.3505 -11.5175 24 1 2.6685 10.3352 -10.1239 25 1 4.7232 9.0801 -10.4123 26 6 2.4685 7.4058 -3.9811 27 7 3.8786 3.4394 -0.8641 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 5.4197 2.4159 1.7460 36 1 6.0271 4.9041 1.0733 37 1 3.2275 5.1743 -2.7266 38 1 4.5166 6.0837 -4.9616 39 1 5.4584 7.5834 -4.5553 40 1 2.3982 6.7349 -6.5647 41 1 1.8271 6.5543 -9.8463 42 1 1.8118 8.1529 -3.5353 43 1 1.9474 6.4850 -4.2429 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022410103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:27 Heat of formation + Delta-G solvation = 10.332357 kcal Electronic energy + Delta-G solvation = -24343.989781 eV Core-core repulsion = 20619.466513 eV Total energy + Delta-G solvation = -3724.523268 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.68207 -40.93378 -39.26139 -38.96690 -35.79049 -35.01755 -34.21550 -31.98696 -31.57066 -30.45820 -27.48534 -26.61493 -26.49123 -25.50086 -23.91165 -22.74348 -22.38747 -21.23098 -20.58758 -19.23103 -18.78092 -17.97969 -17.58031 -17.37340 -17.02967 -16.70631 -16.32854 -16.14046 -15.94515 -15.52119 -15.27217 -14.95747 -14.79697 -14.54278 -14.24120 -13.94801 -13.63873 -13.32880 -13.15571 -13.01987 -12.79148 -12.63614 -12.34613 -12.27964 -12.21739 -12.08224 -11.90933 -11.77791 -11.53185 -11.15345 -10.85499 -10.78583 -10.34866 -10.12356 -9.93962 -8.99191 -7.94837 -5.23331 0.48177 1.17329 1.32283 1.48020 1.50911 1.56793 2.16558 2.34685 2.57525 2.78009 3.36277 3.37853 3.67239 3.76280 3.82007 3.84298 3.95317 3.99198 4.11379 4.20651 4.27734 4.30663 4.44266 4.48030 4.61559 4.65982 4.68632 4.75312 4.80057 4.83837 4.87307 4.88789 5.11595 5.14215 5.32456 5.35565 5.50825 5.65362 5.81442 6.00598 6.27235 6.44764 6.86941 7.15089 7.33598 8.08961 8.32660 9.28248 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002582 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.168429 B =10843.622655 C =12302.958658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.277 5.277 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.600 3.400 10 O -0.572 6.572 11 N -0.695 5.695 12 C 0.134 3.866 13 H 0.114 0.886 14 C -0.170 4.170 15 C 0.153 3.847 16 H 0.084 0.916 17 N -0.724 5.724 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.973 3.027 23 H -0.296 1.296 24 H -0.276 1.276 25 H -0.280 1.280 26 C -0.140 4.140 27 N -0.278 5.278 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.150 0.850 35 H 0.232 0.768 36 H 0.167 0.833 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -14.950 25.725 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.002 3.998 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.344 5.344 12 C 0.029 3.971 13 H 0.131 0.869 14 C -0.212 4.212 15 C 0.042 3.958 16 H 0.102 0.898 17 N -0.361 5.361 18 C -0.378 4.378 19 H 0.095 0.905 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.802 3.198 23 H -0.222 1.222 24 H -0.202 1.202 25 H -0.206 1.206 26 C -0.180 4.180 27 N -0.115 5.115 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.168 0.832 35 H 0.248 0.752 36 H 0.185 0.815 37 H 0.248 0.752 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.104 0.896 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.213 -14.864 25.079 29.154 hybrid contribution 0.087 0.409 -0.878 0.973 sum 0.300 -14.455 24.201 28.191 Atomic orbital electron populations 1.22964 0.78780 1.04291 1.00876 1.87743 1.21859 1.26798 1.95675 1.22585 0.92771 0.85470 1.01742 1.21975 0.92419 0.77165 1.08231 1.45642 1.30966 1.11763 1.18302 1.23541 0.95865 0.95596 0.98250 1.22042 1.05011 0.97667 0.98136 1.21886 1.03548 0.93759 1.00789 1.17277 0.79054 0.85385 0.79724 1.90746 1.43762 1.40729 1.69766 1.45827 1.44693 1.16701 1.27191 1.22271 0.97570 0.86958 0.90311 0.86859 1.24171 0.99799 1.01240 0.96033 1.21660 0.93571 0.97002 0.83543 0.89808 1.42510 1.64200 1.27593 1.01828 1.19687 1.27206 1.03926 0.86966 0.90456 1.25567 1.01508 0.99278 1.00429 1.69807 1.43857 1.25914 1.22452 0.85219 0.77750 0.78125 0.78724 1.22200 1.20221 1.20596 1.23674 0.96272 1.02088 0.95927 1.73450 1.23226 0.98033 1.16785 0.93780 0.87713 0.92867 0.92058 0.92971 0.87616 0.83207 0.75154 0.81532 0.75246 0.91505 0.92402 0.79300 0.94006 0.89562 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.40 -5.42 10.70 -148.98 -1.59 -7.01 16 3 C 0.05 0.64 6.04 71.98 0.44 1.08 16 4 C 0.12 1.14 6.77 86.38 0.58 1.72 16 5 N -0.28 -4.32 3.41 -347.94 -1.19 -5.51 16 6 C 0.01 0.12 11.40 83.54 0.95 1.08 16 7 C -0.20 -4.08 10.81 22.41 0.24 -3.84 16 8 C -0.04 -1.08 7.13 42.46 0.30 -0.77 16 9 C 0.60 18.99 7.83 86.75 0.68 19.67 16 10 O -0.57 -21.38 16.53 -3.95 -0.07 -21.44 16 11 N -0.69 -20.58 5.35 -443.03 -2.37 -22.95 16 12 C 0.13 4.22 4.24 45.52 0.19 4.41 16 13 H 0.11 3.60 7.47 -2.39 -0.02 3.59 16 14 C -0.17 -6.27 7.68 31.12 0.24 -6.03 16 15 C 0.15 6.07 4.48 45.52 0.20 6.27 16 16 H 0.08 3.26 8.10 -2.38 -0.02 3.24 16 17 N -0.72 -36.72 5.40 -320.44 -1.73 -38.45 16 18 C -0.25 -13.77 9.97 84.03 0.84 -12.94 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 22 Si 0.97 46.50 29.55 68.60 2.03 48.53 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 C -0.14 -4.48 7.58 31.12 0.24 -4.25 16 27 N -0.28 -6.42 11.36 -48.18 -0.55 -6.97 16 28 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.15 0.32 8.04 -2.39 -0.02 0.31 16 35 H 0.23 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.41 11.19 8.45 -92.71 -0.78 10.40 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.37 20.26 7.92 -92.71 -0.73 19.52 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.08 2.68 8.09 -2.39 -0.02 2.67 16 Total: -1.00 -75.01 370.66 0.95 -74.06 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.49 Total: 35.07 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.62 Total: 4.01 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -5.55 Total: -133.21 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.66 Total: -28.46 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.01 0.95 -74.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022410103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.391 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds