Wall clock time and date at job start Fri Apr 10 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35763 * 117.00242 * 2 1 4 4 C 1.35594 * 126.08797 * 175.77926 * 3 2 1 5 5 C 1.41057 * 107.79738 * 180.14597 * 4 3 2 6 6 C 1.47720 * 125.97734 * 179.86226 * 5 4 3 7 7 O 1.21572 * 120.00460 * 359.71363 * 6 5 4 8 8 N 1.34783 * 120.00213 * 179.71072 * 6 5 4 9 9 C 1.46496 * 120.00047 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46735 * 173.53047 * 9 8 6 11 11 H 1.08997 * 109.87698 * 57.95718 * 10 9 8 12 12 C 1.54325 * 109.88460 * 178.97481 * 10 9 8 13 13 C 1.55152 * 102.94641 * 141.60847 * 12 10 9 14 14 C 1.54917 * 101.58026 * 324.49761 * 13 12 10 15 15 N 1.47030 * 109.88233 * 296.78218 * 10 9 8 16 16 C 1.36930 * 125.64772 * 61.60765 * 15 10 9 17 17 H 1.07995 * 120.00127 * 323.41659 * 16 15 10 18 18 C 1.38810 * 119.99887 * 143.41671 * 16 15 10 19 19 N 1.31619 * 120.00010 * 165.63345 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 345.63993 * 18 16 15 21 21 H 1.48500 * 109.47033 * 87.15026 * 20 18 16 22 22 H 1.48504 * 109.47272 * 207.14923 * 20 18 16 23 23 H 1.48499 * 109.47392 * 327.14993 * 20 18 16 24 24 N 1.31858 * 108.03898 * 359.59879 * 5 4 3 25 25 N 1.35845 * 126.08251 * 355.48037 * 3 2 1 26 26 C 1.46500 * 125.95047 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47647 * 174.64546 * 1 2 3 28 28 H 1.09001 * 109.47432 * 294.64539 * 1 2 3 29 29 H 1.09002 * 109.47163 * 54.64810 * 1 2 3 30 30 H 1.07999 * 126.09750 * 0.02613 * 4 3 2 31 31 H 0.96999 * 119.99477 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47015 * 53.53582 * 9 8 6 33 33 H 1.08994 * 109.47543 * 293.52772 * 9 8 6 34 34 H 1.09000 * 110.71860 * 259.97830 * 12 10 9 35 35 H 1.09010 * 110.71577 * 23.24218 * 12 10 9 36 36 H 1.08994 * 111.00526 * 82.57447 * 13 12 10 37 37 H 1.08999 * 111.00415 * 206.42613 * 13 12 10 38 38 H 1.08993 * 110.36746 * 278.16914 * 14 13 12 39 39 H 1.09004 * 110.36349 * 155.84369 * 14 13 12 40 40 H 0.97005 * 120.00145 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46892 * 276.58167 * 26 25 3 42 42 H 1.09000 * 109.46840 * 36.57569 * 26 25 3 43 43 H 1.09003 * 109.47364 * 156.58036 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3817 1.4251 0.0806 5 6 3.5962 2.8190 0.0515 6 6 4.9069 3.4969 0.1190 7 8 5.9262 2.8412 0.2139 8 7 4.9728 4.8424 0.0754 9 6 6.2726 5.5147 0.1429 10 6 6.0831 7.0154 -0.0873 11 1 5.3963 7.4205 0.6558 12 6 7.4440 7.7369 0.0073 13 6 7.3468 8.8102 -1.1088 14 6 6.5341 8.0588 -2.1928 15 7 5.5572 7.2512 -1.4400 16 6 4.3589 6.7955 -1.9210 17 1 3.9942 5.8222 -1.6276 18 6 3.6128 7.5845 -2.7856 19 7 2.6189 7.0555 -3.4672 20 14 4.0196 9.3970 -2.9821 21 1 5.0588 9.5603 -4.0303 22 1 2.7958 10.1389 -3.3786 23 1 4.5276 9.9329 -1.6937 24 7 2.4224 3.4106 -0.0524 25 7 1.4335 2.4194 -0.0865 26 6 -0.0095 2.6475 -0.1958 27 1 -0.3634 -1.0232 -0.0959 28 1 -0.3634 0.4285 0.9340 29 1 -0.3633 0.5946 -0.8382 30 1 4.1453 0.6651 0.1559 31 1 4.1594 5.3655 0.0000 32 1 6.9315 5.1096 -0.6251 33 1 6.7158 5.3510 1.1251 34 1 7.5647 8.2058 0.9839 35 1 8.2621 7.0449 -0.1931 36 1 6.8092 9.6911 -0.7580 37 1 8.3359 9.0797 -1.4789 38 1 7.1888 7.4136 -2.7785 39 1 6.0201 8.7683 -2.8414 40 1 2.0977 7.6068 -4.0718 41 1 -0.3147 2.5511 -1.2378 42 1 -0.5404 1.9114 0.4079 43 1 -0.2470 3.6497 0.1611 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028016837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:36 Heat of formation + Delta-G solvation = 62.833563 kcal Electronic energy + Delta-G solvation = -26049.561417 eV Core-core repulsion = 22327.314772 eV Total energy + Delta-G solvation = -3722.246645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45455 -39.18281 -38.21883 -37.61567 -33.96018 -33.35665 -32.60594 -30.30995 -29.94167 -29.18031 -27.89738 -26.42910 -24.99675 -23.93564 -22.30099 -21.34098 -20.78271 -19.77921 -19.24960 -18.07125 -16.86372 -16.71243 -16.21382 -15.94909 -15.64251 -15.18677 -14.88149 -14.77479 -14.54840 -14.25771 -13.85562 -13.57930 -13.25571 -13.12611 -12.91551 -12.84702 -12.46951 -12.28581 -11.91139 -11.48865 -11.36926 -11.28093 -11.27526 -10.87956 -10.70211 -10.55052 -10.46013 -10.17114 -9.78213 -9.59290 -9.48490 -9.02763 -8.55390 -8.30511 -8.27244 -6.80212 -5.96371 -3.44068 1.66355 2.25990 2.39000 2.85366 3.30963 3.44503 3.49809 3.74835 3.91921 4.30142 4.52017 4.60806 4.69901 4.93243 4.96620 5.06258 5.08011 5.16852 5.36081 5.38002 5.44925 5.49139 5.53956 5.66859 5.88348 5.98661 5.98756 6.07107 6.13555 6.15318 6.29280 6.35935 6.42133 6.57599 6.60864 6.87675 6.89471 7.07343 7.33605 7.54687 7.91988 8.20937 8.35882 8.74713 8.85127 9.66315 10.24273 11.17678 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.004275 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.227388 B = 6547.711525 C = 7937.417689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.290 6.290 3 C 0.260 3.740 4 C -0.235 4.235 5 C 0.059 3.941 6 C 0.595 3.405 7 O -0.546 6.546 8 N -0.690 5.690 9 C 0.115 3.885 10 C 0.143 3.857 11 H 0.049 0.951 12 C -0.120 4.120 13 C -0.136 4.136 14 C 0.112 3.888 15 N -0.602 5.602 16 C -0.255 4.255 17 H 0.096 0.904 18 C 0.035 3.965 19 N -0.903 5.903 20 Si 0.895 3.105 21 H -0.286 1.286 22 H -0.306 1.306 23 H -0.271 1.271 24 N -0.227 5.227 25 N -0.392 5.392 26 C 0.077 3.923 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.420 0.580 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.434 -7.651 8.781 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.197 6.197 3 C 0.094 3.906 4 C -0.265 4.265 5 C -0.109 4.109 6 C 0.378 3.622 7 O -0.422 6.422 8 N -0.343 5.343 9 C -0.011 4.011 10 C 0.035 3.965 11 H 0.067 0.933 12 C -0.159 4.159 13 C -0.174 4.174 14 C -0.013 4.013 15 N -0.328 5.328 16 C -0.382 4.382 17 H 0.113 0.887 18 C -0.166 4.166 19 N -0.545 5.545 20 Si 0.727 3.273 21 H -0.214 1.214 22 H -0.235 1.235 23 H -0.196 1.196 24 N -0.057 5.057 25 N -0.189 5.189 26 C -0.063 4.063 27 H 0.125 0.875 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.180 0.820 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.603 -7.287 8.608 11.840 hybrid contribution -0.354 0.569 -0.474 0.821 sum -3.958 -6.718 8.133 11.267 Atomic orbital electron populations 1.23623 0.78327 1.05020 1.01499 1.86270 1.21360 1.21871 1.90181 1.19527 0.91116 0.78929 1.01074 1.20283 0.91866 0.95621 1.18778 1.21937 0.93159 0.92918 1.02920 1.16874 0.85650 0.82454 0.77223 1.90739 1.34386 1.65651 1.51454 1.46138 1.11645 1.05506 1.71033 1.22003 0.84653 0.94144 1.00288 1.21291 0.94034 0.91510 0.89622 0.93318 1.22488 0.97017 0.97742 0.98655 1.22775 0.99664 0.97984 0.96998 1.21991 0.91573 0.93745 0.93950 1.44706 1.18039 1.63207 1.06889 1.18764 0.93209 0.99883 1.26388 0.88727 1.25442 0.95294 0.97641 0.98229 1.69796 1.21757 1.35644 1.27279 0.86717 0.75414 0.87024 0.78142 1.21418 1.23477 1.19607 1.77959 0.95176 1.10378 1.22167 1.49093 1.07227 1.02957 1.59669 1.22512 0.74862 1.05492 1.03452 0.87546 0.92047 0.91624 0.81983 0.73973 0.91370 0.92544 0.91376 0.91176 0.91653 0.91559 0.95069 0.93838 0.92754 0.90241 0.88927 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.38 101.05 0.95 1.02 16 2 O -0.29 -3.59 10.57 -19.00 -0.20 -3.79 16 3 C 0.26 3.96 7.78 -16.72 -0.13 3.83 16 4 C -0.24 -4.09 10.59 -39.46 -0.42 -4.50 16 5 C 0.06 1.15 7.09 -82.91 -0.59 0.56 16 6 C 0.60 12.40 7.83 -12.38 -0.10 12.30 16 7 O -0.55 -12.20 16.88 5.30 0.09 -12.11 16 8 N -0.69 -14.06 4.34 -61.29 -0.27 -14.32 16 9 C 0.11 2.15 5.17 -4.04 -0.02 2.13 16 10 C 0.14 2.71 3.32 -66.95 -0.22 2.49 16 11 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 12 C -0.12 -1.86 6.48 -24.90 -0.16 -2.02 16 13 C -0.14 -2.28 7.09 -24.58 -0.17 -2.46 16 14 C 0.11 2.38 6.25 -2.52 -0.02 2.36 16 15 N -0.60 -13.99 2.68 -162.56 -0.44 -14.43 16 16 C -0.25 -6.89 9.50 -15.06 -0.14 -7.04 16 17 H 0.10 2.70 5.48 -52.49 -0.29 2.41 16 18 C 0.03 0.98 5.47 -17.43 -0.10 0.89 16 19 N -0.90 -27.17 13.97 55.49 0.78 -26.39 16 20 Si 0.89 22.37 24.89 -169.99 -4.23 18.13 16 21 H -0.29 -7.03 6.57 56.52 0.37 -6.66 16 22 H -0.31 -7.80 7.11 56.52 0.40 -7.39 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 N -0.23 -4.35 12.26 33.34 0.41 -3.94 16 25 N -0.39 -6.03 4.04 -68.18 -0.28 -6.30 16 26 C 0.08 0.79 9.62 59.85 0.58 1.36 16 27 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.36 6.59 -51.93 -0.34 0.01 16 29 H 0.07 0.43 5.90 -51.93 -0.31 0.12 16 30 H 0.16 2.62 8.06 -52.49 -0.42 2.19 16 31 H 0.42 9.01 5.93 -40.82 -0.24 8.77 16 32 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.00 7.85 -51.92 -0.41 0.59 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 1.01 2.86 -51.93 -0.15 0.86 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 42 H 0.09 0.60 4.54 -51.93 -0.24 0.37 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 342.43 15.07 5.16 5.16 Total: -1.00 -34.56 342.43 -5.28 -39.84 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.76 Total: 7.23 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: -0.54 Total: 10.93 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: 0.21 Total: -65.39 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.11 Total: -15.91 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.23 Total: 18.13 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.56 -5.28 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028016837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.670 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds