Wall clock time and date at job start Fri Apr 10 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35763 * 117.00242 * 2 1 4 4 C 1.35594 * 126.08797 * 175.77926 * 3 2 1 5 5 C 1.41057 * 107.79738 * 180.14597 * 4 3 2 6 6 C 1.47720 * 125.97734 * 179.86226 * 5 4 3 7 7 O 1.21572 * 120.00460 * 359.71363 * 6 5 4 8 8 N 1.34783 * 120.00213 * 179.71072 * 6 5 4 9 9 C 1.46496 * 120.00047 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46735 * 173.53047 * 9 8 6 11 11 H 1.08997 * 109.87698 * 57.95718 * 10 9 8 12 12 C 1.54325 * 109.88460 * 178.97481 * 10 9 8 13 13 C 1.55152 * 102.94641 * 141.60847 * 12 10 9 14 14 C 1.54917 * 101.58026 * 324.49761 * 13 12 10 15 15 N 1.47030 * 109.88233 * 296.78218 * 10 9 8 16 16 C 1.36930 * 125.64772 * 61.60765 * 15 10 9 17 17 H 1.07995 * 120.00127 * 323.41659 * 16 15 10 18 18 C 1.38810 * 119.99887 * 143.41671 * 16 15 10 19 19 N 1.31619 * 120.00010 * 165.63345 * 18 16 15 20 20 Si 1.86796 * 120.00135 * 345.63993 * 18 16 15 21 21 H 1.48500 * 109.47033 * 87.15026 * 20 18 16 22 22 H 1.48504 * 109.47272 * 207.14923 * 20 18 16 23 23 H 1.48499 * 109.47392 * 327.14993 * 20 18 16 24 24 N 1.31858 * 108.03898 * 359.59879 * 5 4 3 25 25 N 1.35845 * 126.08251 * 355.48037 * 3 2 1 26 26 C 1.46500 * 125.95047 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47647 * 174.64546 * 1 2 3 28 28 H 1.09001 * 109.47432 * 294.64539 * 1 2 3 29 29 H 1.09002 * 109.47163 * 54.64810 * 1 2 3 30 30 H 1.07999 * 126.09750 * 0.02613 * 4 3 2 31 31 H 0.96999 * 119.99477 * 0.02562 * 8 6 5 32 32 H 1.08998 * 109.47015 * 53.53582 * 9 8 6 33 33 H 1.08994 * 109.47543 * 293.52772 * 9 8 6 34 34 H 1.09000 * 110.71860 * 259.97830 * 12 10 9 35 35 H 1.09010 * 110.71577 * 23.24218 * 12 10 9 36 36 H 1.08994 * 111.00526 * 82.57447 * 13 12 10 37 37 H 1.08999 * 111.00415 * 206.42613 * 13 12 10 38 38 H 1.08993 * 110.36746 * 278.16914 * 14 13 12 39 39 H 1.09004 * 110.36349 * 155.84369 * 14 13 12 40 40 H 0.97005 * 120.00145 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.46892 * 276.58167 * 26 25 3 42 42 H 1.09000 * 109.46840 * 36.57569 * 26 25 3 43 43 H 1.09003 * 109.47364 * 156.58036 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.3817 1.4251 0.0806 5 6 3.5962 2.8190 0.0515 6 6 4.9069 3.4969 0.1190 7 8 5.9262 2.8412 0.2139 8 7 4.9728 4.8424 0.0754 9 6 6.2726 5.5147 0.1429 10 6 6.0831 7.0154 -0.0873 11 1 5.3963 7.4205 0.6558 12 6 7.4440 7.7369 0.0073 13 6 7.3468 8.8102 -1.1088 14 6 6.5341 8.0588 -2.1928 15 7 5.5572 7.2512 -1.4400 16 6 4.3589 6.7955 -1.9210 17 1 3.9942 5.8222 -1.6276 18 6 3.6128 7.5845 -2.7856 19 7 2.6189 7.0555 -3.4672 20 14 4.0196 9.3970 -2.9821 21 1 5.0588 9.5603 -4.0303 22 1 2.7958 10.1389 -3.3786 23 1 4.5276 9.9329 -1.6937 24 7 2.4224 3.4106 -0.0524 25 7 1.4335 2.4194 -0.0865 26 6 -0.0095 2.6475 -0.1958 27 1 -0.3634 -1.0232 -0.0959 28 1 -0.3634 0.4285 0.9340 29 1 -0.3633 0.5946 -0.8382 30 1 4.1453 0.6651 0.1559 31 1 4.1594 5.3655 0.0000 32 1 6.9315 5.1096 -0.6251 33 1 6.7158 5.3510 1.1251 34 1 7.5647 8.2058 0.9839 35 1 8.2621 7.0449 -0.1931 36 1 6.8092 9.6911 -0.7580 37 1 8.3359 9.0797 -1.4789 38 1 7.1888 7.4136 -2.7785 39 1 6.0201 8.7683 -2.8414 40 1 2.0977 7.6068 -4.0718 41 1 -0.3147 2.5511 -1.2378 42 1 -0.5404 1.9114 0.4079 43 1 -0.2470 3.6497 0.1611 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028016837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:35 Heat of formation + Delta-G solvation = 35.784991 kcal Electronic energy + Delta-G solvation = -26050.734331 eV Core-core repulsion = 22327.314772 eV Total energy + Delta-G solvation = -3723.419559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.68780 -40.70195 -39.50093 -39.03032 -35.56723 -34.61441 -34.45981 -31.75368 -31.57092 -30.59360 -28.96899 -27.39568 -26.53762 -25.66631 -23.80453 -22.50508 -22.23061 -21.41090 -20.71420 -19.44461 -18.56579 -17.93651 -17.69467 -17.37840 -16.99184 -16.49584 -16.29099 -16.13599 -15.98358 -15.46339 -15.19224 -14.86869 -14.82339 -14.63351 -14.26369 -14.01416 -13.90926 -13.78326 -13.58821 -13.01728 -12.94441 -12.61766 -12.37769 -12.28427 -12.26438 -12.06691 -11.77268 -11.69666 -11.49974 -11.31496 -11.19421 -10.61835 -10.27649 -9.91185 -9.52697 -8.71447 -8.11541 -5.55718 0.26318 1.06033 1.13587 1.31397 1.40372 1.52061 1.84261 2.28503 2.42078 2.47342 3.10172 3.16915 3.36776 3.81963 3.94072 4.01486 4.03411 4.11551 4.18593 4.25604 4.29829 4.33999 4.38152 4.50164 4.53811 4.66847 4.69471 4.71722 4.76502 4.88296 5.01431 5.02039 5.03267 5.16936 5.24391 5.33491 5.49298 5.51697 5.93491 6.16753 6.26537 6.30393 6.59523 6.86460 7.13141 7.58509 8.24009 9.05923 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.004275 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.227388 B = 6547.711525 C = 7937.417689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.295 6.295 3 C 0.279 3.721 4 C -0.261 4.261 5 C 0.036 3.964 6 C 0.591 3.409 7 O -0.569 6.569 8 N -0.693 5.693 9 C 0.116 3.884 10 C 0.138 3.862 11 H 0.050 0.950 12 C -0.109 4.109 13 C -0.125 4.125 14 C 0.098 3.902 15 N -0.620 5.620 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.025 4.025 19 N -0.952 5.952 20 Si 0.955 3.045 21 H -0.282 1.282 22 H -0.316 1.316 23 H -0.256 1.256 24 N -0.262 5.262 25 N -0.385 5.385 26 C 0.062 3.938 27 H 0.137 0.863 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.414 0.586 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.029 0.971 39 H 0.025 0.975 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -7.327 10.234 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.202 6.202 3 C 0.111 3.889 4 C -0.291 4.291 5 C -0.130 4.130 6 C 0.375 3.625 7 O -0.447 6.447 8 N -0.344 5.344 9 C -0.008 4.008 10 C 0.032 3.968 11 H 0.068 0.932 12 C -0.147 4.147 13 C -0.163 4.163 14 C -0.025 4.025 15 N -0.346 5.346 16 C -0.367 4.367 17 H 0.089 0.911 18 C -0.221 4.221 19 N -0.597 5.597 20 Si 0.787 3.213 21 H -0.210 1.210 22 H -0.246 1.246 23 H -0.181 1.181 24 N -0.094 5.094 25 N -0.183 5.183 26 C -0.076 4.076 27 H 0.155 0.845 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.183 0.817 31 H 0.253 0.747 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.154 0.846 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.240 -6.953 10.091 12.676 hybrid contribution -0.574 0.284 -0.907 1.110 sum -3.814 -6.669 9.184 11.974 Atomic orbital electron populations 1.24098 0.75370 1.07581 1.02964 1.86312 1.24360 1.19856 1.89631 1.19440 0.90726 0.79888 0.98809 1.20393 0.93356 0.94899 1.20461 1.21823 0.92803 0.93878 1.04538 1.17136 0.86161 0.82514 0.76676 1.90698 1.35291 1.66013 1.52740 1.46225 1.11934 1.05513 1.70730 1.22068 0.83797 0.93862 1.01108 1.21531 0.96233 0.91804 0.87245 0.93244 1.22523 0.94798 0.97256 1.00093 1.22749 1.00468 0.97559 0.95518 1.22167 0.91509 0.93570 0.95302 1.44867 1.17329 1.63226 1.09168 1.18773 0.94208 0.98917 1.24850 0.91147 1.26058 0.95771 1.01443 0.98848 1.69936 1.23808 1.36870 1.29085 0.85727 0.74641 0.82322 0.78654 1.20981 1.24585 1.18057 1.77854 0.95887 1.12199 1.23437 1.49415 1.08330 1.02390 1.58156 1.23035 0.72345 1.07017 1.05196 0.84510 0.90074 0.90646 0.81710 0.74745 0.93086 0.89872 0.87883 0.89626 0.91609 0.88150 0.95326 0.95712 0.93179 0.89125 0.84636 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.38 113.37 1.06 0.99 16 2 O -0.30 -6.76 10.57 -90.90 -0.96 -7.72 16 3 C 0.28 8.39 7.78 83.46 0.65 9.04 16 4 C -0.26 -9.31 10.59 22.35 0.24 -9.07 16 5 C 0.04 1.47 7.09 42.34 0.30 1.77 16 6 C 0.59 25.63 7.83 86.75 0.68 26.31 16 7 O -0.57 -26.25 16.88 -3.94 -0.07 -26.32 16 8 N -0.69 -29.05 4.34 -466.09 -2.02 -31.07 16 9 C 0.12 4.32 5.17 86.38 0.45 4.76 16 10 C 0.14 5.02 3.32 45.34 0.15 5.17 16 11 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 12 C -0.11 -2.91 6.48 31.78 0.21 -2.71 16 13 C -0.12 -3.71 7.09 31.99 0.23 -3.48 16 14 C 0.10 4.04 6.25 86.86 0.54 4.58 16 15 N -0.62 -28.49 2.68 -668.24 -1.79 -30.29 16 16 C -0.24 -13.21 9.50 84.03 0.80 -12.41 16 17 H 0.07 4.21 5.48 -2.91 -0.02 4.19 16 18 C -0.03 -1.47 5.47 84.86 0.46 -1.01 16 19 N -0.95 -59.45 13.97 21.65 0.30 -59.15 16 20 Si 0.96 46.92 24.89 68.60 1.71 48.63 16 21 H -0.28 -13.46 6.57 99.48 0.65 -12.81 16 22 H -0.32 -15.88 7.11 99.48 0.71 -15.17 16 23 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 24 N -0.26 -10.41 12.26 -48.43 -0.59 -11.01 16 25 N -0.38 -11.70 4.04 -480.57 -1.94 -13.64 16 26 C 0.06 1.17 9.62 127.77 1.23 2.40 16 27 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.08 0.62 6.59 -2.39 -0.02 0.60 16 29 H 0.08 0.74 5.90 -2.39 -0.01 0.73 16 30 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 31 H 0.41 18.52 5.93 -92.71 -0.55 17.97 16 32 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.08 7.85 -2.38 -0.02 2.06 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.03 1.12 2.86 -2.38 -0.01 1.12 16 40 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 41 H 0.09 1.54 7.70 -2.39 -0.02 1.52 16 42 H 0.14 1.33 4.54 -2.39 -0.01 1.32 16 43 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -78.93 342.43 2.07 -76.86 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.45 Total: 27.34 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: 6.99 Total: 26.34 kcal Atomic # 7 Polarization: -139.10 SS G_CDS: -6.05 Total: -145.15 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.03 Total: -34.03 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.71 Total: 48.63 kcal Total: -78.93 2.07 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028016837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.647 kcal (2) G-P(sol) polarization free energy of solvation -78.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds