Wall clock time and date at job start Fri Apr 10 2020 17:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37014 * 125.65177 * 2 1 4 4 C 1.35144 * 107.87700 * 180.10494 * 3 2 1 5 5 C 1.46664 * 126.37382 * 179.89912 * 4 3 2 6 6 O 1.21710 * 119.99659 * 179.69284 * 5 4 3 7 7 N 1.34776 * 120.00325 * 359.69307 * 5 4 3 8 8 C 1.46495 * 119.99778 * 180.27092 * 7 5 4 9 9 C 1.53001 * 109.46907 * 176.20332 * 8 7 5 10 10 H 1.08994 * 109.87529 * 53.58846 * 9 8 7 11 11 C 1.54325 * 109.88234 * 292.41467 * 9 8 7 12 12 C 1.55161 * 102.94567 * 218.38769 * 11 9 8 13 13 C 1.54912 * 101.57788 * 35.50397 * 12 11 9 14 14 N 1.47018 * 109.88400 * 174.60927 * 9 8 7 15 15 C 1.36941 * 125.64799 * 298.39110 * 14 9 8 16 16 H 1.07991 * 119.99724 * 345.87490 * 15 14 9 17 17 C 1.38811 * 119.99916 * 165.87309 * 15 14 9 18 18 N 1.31618 * 120.00238 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99746 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47000 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46925 * 120.00334 * 19 17 15 22 22 H 1.48498 * 109.46829 * 240.00132 * 19 17 15 23 23 N 1.39829 * 107.24620 * 359.64115 * 4 3 2 24 24 C 1.46507 * 126.18255 * 180.22114 * 23 4 3 25 25 C 1.34620 * 125.65172 * 179.69526 * 2 1 3 26 26 O 1.21722 * 125.73178 * 0.05567 * 25 2 1 27 27 H 1.09001 * 109.47128 * 270.30030 * 1 2 3 28 28 H 1.08996 * 109.47261 * 30.30628 * 1 2 3 29 29 H 1.09006 * 109.46962 * 150.30624 * 1 2 3 30 30 H 1.08003 * 126.05866 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99825 * 359.97438 * 7 5 4 32 32 H 1.08992 * 109.47548 * 296.20227 * 8 7 5 33 33 H 1.09002 * 109.47375 * 56.20783 * 8 7 5 34 34 H 1.09000 * 110.72378 * 336.75699 * 11 9 8 35 35 H 1.09003 * 110.72153 * 100.02354 * 11 9 8 36 36 H 1.08989 * 111.00619 * 277.42950 * 12 11 9 37 37 H 1.08998 * 111.00289 * 153.57692 * 12 11 9 38 38 H 1.09001 * 110.36619 * 204.15341 * 13 12 11 39 39 H 1.08997 * 110.45792 * 81.87391 * 13 12 11 40 40 H 0.96997 * 120.00113 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46474 * 90.00185 * 24 23 4 42 42 H 1.09004 * 109.46899 * 209.99787 * 24 23 4 43 43 H 1.08997 * 109.47083 * 330.00147 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1133 0.0000 4 6 3.5505 0.7008 -0.0024 5 6 4.7393 1.5598 -0.0053 6 8 5.8498 1.0618 -0.0016 7 7 4.6019 2.9005 -0.0121 8 6 5.7894 3.7583 -0.0210 9 6 5.3595 5.2232 -0.1229 10 1 4.6428 5.4547 0.6649 11 6 4.7285 5.4900 -1.5058 12 6 5.2527 6.9069 -1.8595 13 6 6.6763 6.8730 -1.2497 14 7 6.5345 6.0986 -0.0032 15 6 7.3609 6.1807 1.0857 16 1 7.0556 5.7522 2.0287 17 6 8.5910 6.8148 0.9772 18 7 8.9628 7.3375 -0.1721 19 14 9.7180 6.9274 2.4627 20 1 9.0719 6.2670 3.6253 21 1 11.0042 6.2496 2.1607 22 1 9.9738 8.3547 2.7828 23 7 3.5376 -0.6974 0.0045 24 6 4.7121 -1.5732 0.0094 25 6 2.2496 -1.0939 0.0058 26 8 1.8610 -2.2474 0.0110 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3633 -0.8928 -0.5091 30 1 1.9246 2.1388 0.0004 31 1 3.7168 3.2973 -0.0154 32 1 6.3530 3.6084 0.8998 33 1 6.4156 3.5032 -0.8759 34 1 5.0743 4.7576 -2.2353 35 1 3.6405 5.4865 -1.4404 36 1 4.6438 7.6778 -1.3875 37 1 5.2935 7.0500 -2.9393 38 1 7.0196 7.8842 -1.0312 39 1 7.3697 6.3760 -1.9282 40 1 9.8222 7.7809 -0.2478 41 1 5.0028 -1.7853 1.0383 42 1 4.4716 -2.5064 -0.4999 43 1 5.5356 -1.0795 -0.5065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028339494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:47 Heat of formation + Delta-G solvation = -11.989662 kcal Electronic energy + Delta-G solvation = -25601.423158 eV Core-core repulsion = 21875.931935 eV Total energy + Delta-G solvation = -3725.491223 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.52101 -40.62811 -39.19099 -37.99787 -36.49706 -35.69754 -34.38487 -32.04249 -31.27426 -30.34144 -28.84829 -27.10767 -26.63979 -25.61784 -24.01828 -22.01661 -21.79520 -21.48013 -21.03936 -19.26179 -18.51870 -17.88721 -17.62281 -17.31092 -16.70789 -16.42219 -16.23930 -16.07245 -15.71313 -15.60792 -15.09877 -15.03237 -14.62119 -14.47895 -13.97501 -13.90582 -13.61403 -13.42183 -13.34414 -13.22610 -12.95876 -12.82318 -12.66629 -12.55967 -11.95919 -11.86144 -11.79287 -11.65829 -11.42373 -11.32145 -11.10575 -10.93859 -10.65728 -10.10305 -8.90009 -8.81998 -7.85591 -5.22348 0.33342 1.11295 1.45765 1.48336 1.56866 1.65359 1.84116 2.21482 2.48735 2.62196 3.34789 3.57199 3.79130 3.96214 3.98102 4.06437 4.08775 4.21333 4.33575 4.34939 4.37588 4.52887 4.55454 4.61889 4.67551 4.81216 4.84042 4.94392 5.03917 5.08633 5.22150 5.25043 5.27938 5.38489 5.53315 5.60897 5.64837 5.72570 5.84150 6.11551 6.27024 6.58684 7.04391 7.12682 7.22909 7.80782 8.45557 9.25240 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020301 B = 0.003175 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.908611 B = 8817.304878 C = 9630.930353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.516 5.516 3 C 0.102 3.898 4 C -0.071 4.071 5 C 0.588 3.412 6 O -0.585 6.585 7 N -0.688 5.688 8 C 0.131 3.869 9 C 0.148 3.852 10 H 0.061 0.939 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.171 3.829 14 N -0.611 5.611 15 C -0.234 4.234 16 H 0.080 0.920 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.298 1.298 22 H -0.291 1.291 23 N -0.520 5.520 24 C 0.101 3.899 25 C 0.630 3.370 26 O -0.610 6.610 27 H 0.086 0.914 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.420 0.580 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.034 0.966 39 H -0.011 1.011 40 H 0.246 0.754 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.000 -8.209 -2.109 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.231 5.231 3 C -0.028 4.028 4 C -0.179 4.179 5 C 0.375 3.625 6 O -0.467 6.467 7 N -0.340 5.340 8 C 0.005 3.995 9 C 0.041 3.959 10 H 0.078 0.922 11 C -0.151 4.151 12 C -0.173 4.173 13 C 0.046 3.954 14 N -0.336 5.336 15 C -0.363 4.363 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.594 5.594 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.218 1.218 23 N -0.239 5.239 24 C -0.040 4.040 25 C 0.333 3.667 26 O -0.491 6.491 27 H 0.105 0.895 28 H 0.148 0.852 29 H 0.096 0.904 30 H 0.265 0.735 31 H 0.258 0.742 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.007 0.993 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.317 -9.316 -2.038 22.444 hybrid contribution 1.427 0.035 0.728 1.602 sum -18.890 -9.282 -1.310 21.088 Atomic orbital electron populations 1.22263 0.71867 1.06253 1.05000 1.45224 1.09426 1.05228 1.63207 1.22911 0.86002 0.94987 0.98929 1.19592 0.94675 0.83320 1.20311 1.17011 0.86742 0.82456 0.76273 1.90817 1.28160 1.75052 1.52631 1.45381 1.10954 1.03905 1.73804 1.21764 0.86777 0.91049 0.99901 1.21394 0.89593 0.86973 0.97980 0.92172 1.22645 1.01562 0.96352 0.94493 1.22864 0.96204 0.97671 1.00513 1.21287 0.93167 0.94958 0.85972 1.44773 1.30423 1.43760 1.14619 1.19349 0.96074 1.31493 0.89431 0.90239 1.25641 0.98726 1.01757 0.99335 1.70144 1.21492 1.42912 1.24884 0.85168 0.78739 0.76965 0.79456 1.19011 1.22546 1.21762 1.45306 1.07094 1.05896 1.65627 1.21833 0.85168 0.93552 1.03477 1.16391 0.81236 0.85339 0.83750 1.90983 1.77291 1.18145 1.62698 0.89515 0.85150 0.90448 0.73493 0.74218 0.94513 0.94235 0.91664 0.86836 0.90998 0.90210 0.94743 0.99282 0.94470 0.91236 0.89605 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.01 127.77 1.41 2.00 16 2 N -0.52 -8.15 3.12 -679.65 -2.12 -10.27 16 3 C 0.10 1.23 10.91 83.17 0.91 2.13 16 4 C -0.07 -1.56 6.88 39.35 0.27 -1.29 16 5 C 0.59 16.21 7.79 86.44 0.67 16.88 16 6 O -0.59 -21.98 14.83 -4.38 -0.06 -22.04 16 7 N -0.69 -15.89 5.36 -467.09 -2.51 -18.39 16 8 C 0.13 4.48 5.11 86.38 0.44 4.92 16 9 C 0.15 4.93 3.19 45.34 0.14 5.07 16 10 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 11 C -0.11 -2.85 6.23 31.78 0.20 -2.65 16 12 C -0.13 -4.17 7.09 31.99 0.23 -3.94 16 13 C 0.17 7.90 5.42 86.86 0.47 8.37 16 14 N -0.61 -28.74 3.13 -668.26 -2.09 -30.83 16 15 C -0.23 -12.48 9.71 84.03 0.82 -11.67 16 16 H 0.08 4.09 7.83 -2.92 -0.02 4.07 16 17 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 18 N -0.95 -55.98 10.55 21.65 0.23 -55.76 16 19 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 N -0.52 -13.56 3.21 -667.02 -2.14 -15.70 16 24 C 0.10 2.55 10.58 127.77 1.35 3.90 16 25 C 0.63 16.50 8.49 179.11 1.52 18.02 16 26 O -0.61 -20.27 17.59 -4.42 -0.08 -20.35 16 27 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.13 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.08 0.76 8.04 -2.38 -0.02 0.75 16 30 H 0.25 -0.06 7.37 -2.91 -0.02 -0.08 16 31 H 0.42 5.40 7.25 -92.71 -0.67 4.73 16 32 H 0.04 1.51 7.83 -2.39 -0.02 1.49 16 33 H 0.04 1.58 8.01 -2.39 -0.02 1.56 16 34 H 0.06 1.68 7.76 -2.39 -0.02 1.67 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.03 1.82 6.89 -2.39 -0.02 1.81 16 39 H -0.01 -0.57 8.07 -2.39 -0.02 -0.59 16 40 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 41 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 43 H 0.09 2.46 6.45 -2.39 -0.02 2.45 16 Total: -1.00 -84.12 355.41 2.50 -81.63 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.35 Total: 5.43 kcal Atomic # 6 Polarization: 29.92 SS G_CDS: 8.89 Total: 38.81 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -8.63 Total: -130.95 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.14 Total: -42.39 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -84.12 2.50 -81.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028339494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.640 kcal (2) G-P(sol) polarization free energy of solvation -84.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds