Wall clock time and date at job start Fri Apr 10 2020 17:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35769 * 117.00324 * 2 1 4 4 C 1.35593 * 126.08606 * 182.97965 * 3 2 1 5 5 C 1.41060 * 107.79623 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.97972 * 180.02562 * 5 4 3 7 7 O 1.21574 * 120.00194 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00300 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00203 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47299 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.88551 * 51.12418 * 10 9 8 12 12 C 1.55154 * 111.00901 * 175.00210 * 10 9 8 13 13 C 1.54321 * 102.94541 * 153.58066 * 12 10 9 14 14 N 1.47022 * 107.26785 * 337.80734 * 13 12 10 15 15 C 1.36944 * 125.64578 * 178.92127 * 14 13 12 16 16 H 1.07994 * 119.99950 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99894 * 0.02740 * 15 14 13 18 18 N 1.31620 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99880 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47410 * 119.99699 * 19 17 15 22 22 H 1.48504 * 109.46925 * 239.99578 * 19 17 15 23 23 C 1.47421 * 108.70632 * 358.93950 * 14 13 12 24 24 N 1.31865 * 108.04057 * 0.02562 * 5 4 3 25 25 N 1.35848 * 126.08011 * 2.67279 * 3 2 1 26 26 C 1.46491 * 125.94898 * 359.97438 * 25 3 2 27 27 H 1.08991 * 109.47292 * 307.45209 * 1 2 3 28 28 H 1.09007 * 109.46803 * 67.45139 * 1 2 3 29 29 H 1.08999 * 109.47329 * 187.44979 * 1 2 3 30 30 H 1.08002 * 126.09887 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99219 * 0.02562 * 8 6 5 32 32 H 1.09000 * 109.47569 * 300.00660 * 9 8 6 33 33 H 1.09003 * 109.47043 * 60.00500 * 9 8 6 34 34 H 1.09005 * 110.72448 * 271.94478 * 12 10 9 35 35 H 1.09005 * 110.72109 * 35.03501 * 12 10 9 36 36 H 1.08995 * 109.88742 * 97.22829 * 13 12 10 37 37 H 1.09008 * 109.87944 * 218.39292 * 13 12 10 38 38 H 0.97001 * 120.00053 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.37074 * 265.29530 * 23 14 13 40 40 H 1.09001 * 110.36523 * 142.96374 * 23 14 13 41 41 H 1.09003 * 109.47337 * 82.76018 * 26 25 3 42 42 H 1.09007 * 109.46911 * 202.76220 * 26 25 3 43 43 H 1.09001 * 109.47373 * 322.75898 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3830 1.4244 -0.0570 5 6 3.5972 2.8185 -0.0345 6 6 4.9092 3.4957 -0.0801 7 8 5.9304 2.8391 -0.1436 8 7 4.9742 4.8417 -0.0524 9 6 6.2753 5.5133 -0.0970 10 6 6.0688 7.0286 -0.0535 11 1 5.4201 7.3088 0.7763 12 6 7.4277 7.7731 0.0272 13 6 7.1099 9.1427 -0.6090 14 7 5.9230 8.9646 -1.4582 15 6 5.3056 9.9486 -2.1834 16 1 4.4352 9.7153 -2.7786 17 6 5.7987 11.2458 -2.1535 18 7 6.8592 11.5303 -1.4278 19 14 4.9561 12.5882 -3.1422 20 1 3.7944 12.0138 -3.8674 21 1 4.4880 13.6585 -2.2255 22 1 5.9165 13.1593 -4.1204 23 6 5.5073 7.5514 -1.3993 24 7 2.4214 3.4112 0.0342 25 7 1.4315 2.4204 0.0512 26 6 -0.0139 2.6497 0.1156 27 1 -0.3633 0.6249 0.8157 28 1 -0.3633 0.3941 -0.9492 29 1 -0.3634 -1.0190 0.1332 30 1 4.1479 0.6638 -0.1100 31 1 4.1593 5.3655 -0.0021 32 1 6.8740 5.2030 0.7594 33 1 6.7919 5.2437 -1.0182 34 1 7.7408 7.8930 1.0643 35 1 8.1907 7.2463 -0.5460 36 1 6.9010 9.8744 0.1713 37 1 7.9530 9.4745 -1.2151 38 1 7.2040 12.4367 -1.4072 39 1 5.9373 6.9944 -2.2317 40 1 4.4200 7.4750 -1.4119 41 1 -0.3509 2.5569 1.1481 42 1 -0.2397 3.6509 -0.2517 43 1 -0.5267 1.9121 -0.5016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028679349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:56 Heat of formation + Delta-G solvation = 50.947367 kcal Electronic energy + Delta-G solvation = -24865.088845 eV Core-core repulsion = 21142.326776 eV Total energy + Delta-G solvation = -3722.762069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90431 -39.58322 -38.49386 -37.53511 -34.63854 -33.81398 -32.47527 -30.60937 -29.68645 -28.47571 -28.12940 -26.76252 -25.49758 -23.99389 -22.57017 -21.74636 -20.40160 -19.93239 -19.53770 -18.38466 -17.11870 -16.84862 -16.43419 -16.28256 -15.74030 -15.39976 -15.23118 -14.90136 -14.65169 -14.44161 -14.19750 -13.80539 -13.57895 -13.45325 -13.21851 -12.96607 -12.29353 -11.99555 -11.88739 -11.75515 -11.68696 -11.35301 -11.07336 -10.86731 -10.78910 -10.44359 -10.15986 -10.01871 -9.86972 -9.78162 -9.62397 -9.49386 -8.91729 -8.70832 -8.57374 -6.79384 -5.68313 -3.01477 1.15021 1.79906 1.95227 2.47084 3.24402 3.36715 3.41368 3.46685 3.49301 3.87587 4.26113 4.34626 4.51930 4.56983 4.60167 4.72425 4.97114 5.01760 5.10071 5.22726 5.28688 5.47786 5.57718 5.58908 5.64547 5.73281 5.94839 6.06901 6.11033 6.14018 6.39989 6.45289 6.56137 6.58798 6.73501 6.91545 6.96718 7.05117 7.59775 7.61029 7.67429 7.86340 8.20270 8.29482 9.25547 9.85936 10.52266 11.43576 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002637 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.988303 B =10615.121785 C =11769.555652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.288 6.288 3 C 0.267 3.733 4 C -0.234 4.234 5 C 0.061 3.939 6 C 0.597 3.403 7 O -0.528 6.528 8 N -0.707 5.707 9 C 0.131 3.869 10 C -0.118 4.118 11 H 0.080 0.920 12 C -0.134 4.134 13 C 0.177 3.823 14 N -0.607 5.607 15 C -0.226 4.226 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.141 3.859 24 N -0.246 5.246 25 N -0.393 5.393 26 C 0.076 3.924 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.166 0.834 31 H 0.409 0.591 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.251 0.749 39 H 0.020 0.980 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 -21.891 5.565 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.194 6.194 3 C 0.101 3.899 4 C -0.264 4.264 5 C -0.107 4.107 6 C 0.380 3.620 7 O -0.402 6.402 8 N -0.358 5.358 9 C 0.008 3.992 10 C -0.138 4.138 11 H 0.099 0.901 12 C -0.173 4.173 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.354 4.354 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.015 3.985 24 N -0.077 5.077 25 N -0.190 5.190 26 C -0.064 4.064 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.184 0.816 31 H 0.244 0.756 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.119 0.881 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.797 -21.312 5.526 25.983 hybrid contribution -0.895 0.355 -0.500 1.085 sum -14.691 -20.957 5.026 26.082 Atomic orbital electron populations 1.23665 0.77976 1.05361 1.01569 1.86307 1.21620 1.21573 1.89913 1.19568 0.91078 0.78931 1.00360 1.20350 0.92012 0.95629 1.18412 1.21912 0.92875 0.93081 1.02836 1.16860 0.85815 0.82173 0.77154 1.90808 1.34219 1.65286 1.49937 1.45959 1.11065 1.05658 1.73163 1.21497 0.83640 0.91645 1.02406 1.22617 0.99385 0.91601 1.00152 0.90132 1.22859 0.95038 0.98879 1.00559 1.21147 0.89761 0.90401 0.93448 1.44497 1.31506 1.03057 1.54253 1.19106 1.08389 0.87467 1.20472 0.90456 1.24806 0.98152 0.97359 1.00306 1.69978 1.24532 1.18922 1.43566 0.86048 0.78485 0.82029 0.79230 1.20549 1.21803 1.21784 1.21594 0.96900 0.86933 0.93067 1.77765 0.95115 1.10995 1.23863 1.49074 1.07014 1.02945 1.59990 1.22541 0.74584 1.05818 1.03477 0.91664 0.91822 0.87269 0.81638 0.75596 0.91233 0.90917 0.91958 0.92118 0.93562 0.93897 0.93844 0.96218 0.94538 0.90277 0.88095 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.40 101.05 0.95 0.98 16 2 O -0.29 -2.49 10.57 -19.02 -0.20 -2.69 16 3 C 0.27 2.88 7.78 -16.72 -0.13 2.75 16 4 C -0.23 -2.97 10.59 -39.46 -0.42 -3.39 16 5 C 0.06 0.84 7.09 -82.91 -0.59 0.25 16 6 C 0.60 9.16 7.83 -12.39 -0.10 9.06 16 7 O -0.53 -9.43 16.90 5.30 0.09 -9.34 16 8 N -0.71 -10.12 5.50 -61.29 -0.34 -10.46 16 9 C 0.13 1.96 5.13 -4.05 -0.02 1.94 16 10 C -0.12 -2.00 3.05 -88.47 -0.27 -2.27 16 11 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 12 C -0.13 -2.48 6.42 -24.90 -0.16 -2.64 16 13 C 0.18 4.32 5.37 -3.07 -0.02 4.30 16 14 N -0.61 -15.64 3.39 -170.08 -0.58 -16.21 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.37 10.31 55.49 0.57 -26.79 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 C 0.14 2.91 6.65 -2.53 -0.02 2.90 16 24 N -0.25 -3.18 12.26 33.34 0.41 -2.77 16 25 N -0.39 -3.97 4.03 -68.19 -0.28 -4.25 16 26 C 0.08 0.39 9.59 59.84 0.57 0.96 16 27 H 0.06 0.16 5.82 -51.93 -0.30 -0.14 16 28 H 0.06 0.16 6.57 -51.93 -0.34 -0.18 16 29 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.41 5.48 8.17 -40.82 -0.33 5.15 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 36 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 37 H 0.04 1.16 7.51 -51.92 -0.39 0.77 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.27 7.61 -51.93 -0.40 -0.12 16 42 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 43 H 0.10 0.24 4.66 -51.93 -0.24 0.00 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -35.02 353.18 -6.60 -41.62 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.13 Total: 0.36 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.44 Total: 7.94 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.21 Total: -60.48 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.11 Total: -12.03 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.02 -6.60 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028679349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.568 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds