Wall clock time and date at job start Fri Apr 10 2020 17:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35769 * 117.00324 * 2 1 4 4 C 1.35593 * 126.08606 * 182.97965 * 3 2 1 5 5 C 1.41060 * 107.79623 * 179.97438 * 4 3 2 6 6 C 1.47718 * 125.97972 * 180.02562 * 5 4 3 7 7 O 1.21574 * 120.00194 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00300 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00203 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47299 * 179.97438 * 9 8 6 11 11 H 1.08997 * 110.88551 * 51.12418 * 10 9 8 12 12 C 1.55154 * 111.00901 * 175.00210 * 10 9 8 13 13 C 1.54321 * 102.94541 * 153.58066 * 12 10 9 14 14 N 1.47022 * 107.26785 * 337.80734 * 13 12 10 15 15 C 1.36944 * 125.64578 * 178.92127 * 14 13 12 16 16 H 1.07994 * 119.99950 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99894 * 0.02740 * 15 14 13 18 18 N 1.31620 * 120.00218 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99880 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47410 * 119.99699 * 19 17 15 22 22 H 1.48504 * 109.46925 * 239.99578 * 19 17 15 23 23 C 1.47421 * 108.70632 * 358.93950 * 14 13 12 24 24 N 1.31865 * 108.04057 * 0.02562 * 5 4 3 25 25 N 1.35848 * 126.08011 * 2.67279 * 3 2 1 26 26 C 1.46491 * 125.94898 * 359.97438 * 25 3 2 27 27 H 1.08991 * 109.47292 * 307.45209 * 1 2 3 28 28 H 1.09007 * 109.46803 * 67.45139 * 1 2 3 29 29 H 1.08999 * 109.47329 * 187.44979 * 1 2 3 30 30 H 1.08002 * 126.09887 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99219 * 0.02562 * 8 6 5 32 32 H 1.09000 * 109.47569 * 300.00660 * 9 8 6 33 33 H 1.09003 * 109.47043 * 60.00500 * 9 8 6 34 34 H 1.09005 * 110.72448 * 271.94478 * 12 10 9 35 35 H 1.09005 * 110.72109 * 35.03501 * 12 10 9 36 36 H 1.08995 * 109.88742 * 97.22829 * 13 12 10 37 37 H 1.09008 * 109.87944 * 218.39292 * 13 12 10 38 38 H 0.97001 * 120.00053 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.37074 * 265.29530 * 23 14 13 40 40 H 1.09001 * 110.36523 * 142.96374 * 23 14 13 41 41 H 1.09003 * 109.47337 * 82.76018 * 26 25 3 42 42 H 1.09007 * 109.46911 * 202.76220 * 26 25 3 43 43 H 1.09001 * 109.47373 * 322.75898 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 3.3830 1.4244 -0.0570 5 6 3.5972 2.8185 -0.0345 6 6 4.9092 3.4957 -0.0801 7 8 5.9304 2.8391 -0.1436 8 7 4.9742 4.8417 -0.0524 9 6 6.2753 5.5133 -0.0970 10 6 6.0688 7.0286 -0.0535 11 1 5.4201 7.3088 0.7763 12 6 7.4277 7.7731 0.0272 13 6 7.1099 9.1427 -0.6090 14 7 5.9230 8.9646 -1.4582 15 6 5.3056 9.9486 -2.1834 16 1 4.4352 9.7153 -2.7786 17 6 5.7987 11.2458 -2.1535 18 7 6.8592 11.5303 -1.4278 19 14 4.9561 12.5882 -3.1422 20 1 3.7944 12.0138 -3.8674 21 1 4.4880 13.6585 -2.2255 22 1 5.9165 13.1593 -4.1204 23 6 5.5073 7.5514 -1.3993 24 7 2.4214 3.4112 0.0342 25 7 1.4315 2.4204 0.0512 26 6 -0.0139 2.6497 0.1156 27 1 -0.3633 0.6249 0.8157 28 1 -0.3633 0.3941 -0.9492 29 1 -0.3634 -1.0190 0.1332 30 1 4.1479 0.6638 -0.1100 31 1 4.1593 5.3655 -0.0021 32 1 6.8740 5.2030 0.7594 33 1 6.7919 5.2437 -1.0182 34 1 7.7408 7.8930 1.0643 35 1 8.1907 7.2463 -0.5460 36 1 6.9010 9.8744 0.1713 37 1 7.9530 9.4745 -1.2151 38 1 7.2040 12.4367 -1.4072 39 1 5.9373 6.9944 -2.2317 40 1 4.4200 7.4750 -1.4119 41 1 -0.3509 2.5569 1.1481 42 1 -0.2397 3.6509 -0.2517 43 1 -0.5267 1.9121 -0.5016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028679349.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:55 Heat of formation + Delta-G solvation = 24.188946 kcal Electronic energy + Delta-G solvation = -24866.249178 eV Core-core repulsion = 21142.326776 eV Total energy + Delta-G solvation = -3723.922401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71728 -40.71582 -39.38500 -39.02293 -36.08946 -34.57117 -34.24902 -31.82206 -31.10756 -29.91702 -28.95800 -27.57962 -26.97937 -25.50465 -23.75043 -22.50826 -21.99352 -21.49791 -20.77895 -19.29096 -18.75156 -17.73122 -17.45771 -17.44146 -16.71658 -16.57290 -16.31508 -16.16998 -15.99114 -15.54030 -15.37574 -14.79162 -14.65196 -14.60892 -14.06466 -13.91752 -13.89343 -13.79241 -13.42812 -13.03806 -12.75736 -12.65588 -12.40619 -12.29572 -11.97754 -11.93192 -11.84965 -11.81195 -11.54370 -11.44740 -11.25529 -10.70231 -10.32980 -10.05237 -9.54133 -8.88236 -7.83961 -5.19363 0.19569 1.04543 1.09139 1.46069 1.47308 1.57620 1.78129 2.26362 2.28019 2.50239 3.09556 3.34131 3.61756 3.76631 3.86666 4.00865 4.03716 4.06091 4.16515 4.26963 4.30389 4.37777 4.46609 4.53128 4.65254 4.66697 4.72797 4.74136 4.82963 4.93627 4.99560 5.06296 5.11139 5.22212 5.31073 5.46012 5.47132 5.70670 5.80017 6.10056 6.21738 6.27644 6.50744 7.04910 7.11980 7.79412 8.43907 9.26761 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.020168 B = 0.002637 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.988303 B =10615.121785 C =11769.555652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.299 6.299 3 C 0.280 3.720 4 C -0.262 4.262 5 C 0.042 3.958 6 C 0.599 3.401 7 O -0.559 6.559 8 N -0.701 5.701 9 C 0.142 3.858 10 C -0.096 4.096 11 H 0.089 0.911 12 C -0.121 4.121 13 C 0.183 3.817 14 N -0.629 5.629 15 C -0.240 4.240 16 H 0.082 0.918 17 C -0.069 4.069 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.265 1.265 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.137 3.863 24 N -0.261 5.261 25 N -0.384 5.384 26 C 0.061 3.939 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.162 0.838 31 H 0.414 0.586 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.013 0.987 37 H 0.005 0.995 38 H 0.246 0.754 39 H 0.020 0.980 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.421 -23.442 5.856 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.112 3.888 4 C -0.292 4.292 5 C -0.124 4.124 6 C 0.383 3.617 7 O -0.436 6.436 8 N -0.352 5.352 9 C 0.019 3.981 10 C -0.115 4.115 11 H 0.107 0.893 12 C -0.160 4.160 13 C 0.057 3.943 14 N -0.356 5.356 15 C -0.369 4.369 16 H 0.100 0.900 17 C -0.262 4.262 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.218 1.218 22 H -0.221 1.221 23 C 0.012 3.988 24 N -0.094 5.094 25 N -0.182 5.182 26 C -0.077 4.077 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.150 0.850 30 H 0.180 0.820 31 H 0.250 0.750 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.031 0.969 37 H 0.023 0.977 38 H 0.056 0.944 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.343 -22.892 5.817 28.722 hybrid contribution -0.285 0.742 -0.604 0.998 sum -16.628 -22.150 5.213 28.183 Atomic orbital electron populations 1.24101 0.75279 1.07513 1.03085 1.86332 1.24416 1.20238 1.89489 1.19477 0.90758 0.79869 0.98709 1.20432 0.93310 0.95293 1.20155 1.21662 0.92558 0.93535 1.04634 1.17039 0.86155 0.82131 0.76341 1.90781 1.35447 1.65897 1.51500 1.45865 1.11021 1.05528 1.72810 1.21321 0.84103 0.89879 1.02831 1.22415 0.98206 0.92724 0.98191 0.89302 1.22723 0.96189 0.95419 1.01652 1.20931 0.88198 0.93132 0.91992 1.44826 1.31914 1.04744 1.54081 1.19501 1.08513 0.88420 1.20507 0.90036 1.25673 0.99065 0.99687 1.01776 1.70201 1.25962 1.18915 1.45056 0.84999 0.77724 0.78920 0.77629 1.18944 1.21798 1.22055 1.21766 0.97494 0.84485 0.95065 1.77669 0.95319 1.12111 1.24261 1.49411 1.08221 1.02220 1.58348 1.23053 0.71904 1.07093 1.05670 0.90021 0.90318 0.85009 0.82036 0.74970 0.89809 0.91438 0.89410 0.90738 0.96875 0.97685 0.94442 0.96239 0.93791 0.88088 0.87815 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.03 9.40 113.37 1.07 1.04 16 2 O -0.30 -4.50 10.57 -90.96 -0.96 -5.46 16 3 C 0.28 5.61 7.78 83.46 0.65 6.25 16 4 C -0.26 -6.61 10.59 22.35 0.24 -6.37 16 5 C 0.04 1.16 7.09 42.34 0.30 1.46 16 6 C 0.60 18.18 7.83 86.75 0.68 18.86 16 7 O -0.56 -20.01 16.90 -3.95 -0.07 -20.08 16 8 N -0.70 -19.29 5.50 -466.10 -2.56 -21.85 16 9 C 0.14 4.01 5.13 86.38 0.44 4.45 16 10 C -0.10 -3.11 3.05 -9.40 -0.03 -3.14 16 11 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 12 C -0.12 -4.33 6.42 31.78 0.20 -4.12 16 13 C 0.18 9.12 5.37 86.73 0.47 9.58 16 14 N -0.63 -32.81 3.39 -692.00 -2.35 -35.16 16 15 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 18 N -0.95 -58.25 10.31 21.65 0.22 -58.03 16 19 Si 0.98 46.37 29.55 68.60 2.03 48.39 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 C 0.14 5.55 6.65 86.86 0.58 6.13 16 24 N -0.26 -6.44 12.26 -48.43 -0.59 -7.04 16 25 N -0.38 -6.96 4.03 -480.57 -1.94 -8.90 16 26 C 0.06 0.42 9.59 127.77 1.22 1.65 16 27 H 0.08 0.08 5.82 -2.39 -0.01 0.07 16 28 H 0.08 0.10 6.57 -2.38 -0.02 0.08 16 29 H 0.13 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 31 H 0.41 10.57 8.17 -92.71 -0.76 9.82 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.02 7.96 -2.39 -0.02 2.01 16 34 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.07 2.47 8.04 -2.38 -0.02 2.46 16 36 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 37 H 0.00 0.28 7.51 -2.38 -0.02 0.26 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.02 0.81 7.90 -2.39 -0.02 0.79 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 0.31 7.61 -2.39 -0.02 0.30 16 42 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.13 0.13 4.66 -2.39 -0.01 0.12 16 Total: -1.00 -78.32 353.18 1.20 -77.12 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.28 Total: 11.58 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 7.15 Total: 19.42 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -7.22 Total: -130.98 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -1.03 Total: -25.54 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -78.32 1.20 -77.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028679349.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.309 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds