Wall clock time and date at job start Fri Apr 10 2020 17:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 C 1.52998 * 109.47171 * 239.99527 * 2 1 3 5 5 N 1.46510 * 109.46856 * 119.99576 * 2 1 3 6 6 N 1.28781 * 125.44943 * 359.97411 * 5 2 1 7 7 N 1.28994 * 108.72484 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35493 * 0.02562 * 7 6 5 9 9 C 1.50702 * 126.54852 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46623 * 90.02506 * 9 8 7 11 11 O 1.21272 * 120.00493 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99751 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53496 * 114.20904 * 155.00161 * 13 12 10 15 15 N 1.47062 * 87.98485 * 87.72044 * 14 13 12 16 16 C 1.36939 * 136.05593 * 207.08750 * 15 14 13 17 17 H 1.08008 * 119.99868 * 7.82597 * 16 15 14 18 18 C 1.38808 * 120.00203 * 187.82575 * 16 15 14 19 19 N 1.31618 * 119.99998 * 195.17052 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 15.16580 * 18 16 15 21 21 H 1.48503 * 109.47450 * 270.00422 * 20 18 16 22 22 H 1.48503 * 109.47360 * 30.00092 * 20 18 16 23 23 H 1.48498 * 109.47360 * 150.00270 * 20 18 16 24 24 C 1.47059 * 87.88616 * 27.34176 * 15 14 13 25 25 N 1.28877 * 125.44624 * 180.30829 * 5 2 1 26 26 H 1.09003 * 109.46751 * 300.00324 * 1 2 3 27 27 H 1.08994 * 109.46489 * 60.00232 * 1 2 3 28 28 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46789 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46589 * 299.99692 * 3 2 1 31 31 H 1.09001 * 109.47060 * 59.99519 * 3 2 1 32 32 H 1.09005 * 109.46932 * 300.00290 * 4 2 1 33 33 H 1.08991 * 109.47080 * 60.00176 * 4 2 1 34 34 H 1.08998 * 109.46834 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47168 * 330.02870 * 9 8 7 36 36 H 1.08997 * 109.46771 * 210.02303 * 9 8 7 37 37 H 0.97007 * 119.99743 * 359.97438 * 12 10 9 38 38 H 1.09003 * 113.27537 * 21.93512 * 13 12 10 39 39 H 1.09008 * 113.46447 * 332.93478 * 14 13 12 40 40 H 1.08996 * 113.51824 * 202.51288 * 14 13 12 41 41 H 0.96995 * 120.00365 * 354.90363 * 19 18 16 42 42 H 1.08997 * 113.47135 * 87.43718 * 24 15 14 43 43 H 1.09007 * 113.47198 * 217.88025 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 7 1.2782 -1.2170 2.1093 7 7 2.0399 -1.7371 3.0110 8 6 3.3016 -1.5217 2.6384 9 6 4.5419 -1.9487 3.3803 10 6 4.9562 -3.3218 2.9174 11 8 4.3086 -3.8966 2.0685 12 7 6.0473 -3.9104 3.4463 13 6 6.4498 -5.2454 2.9968 14 6 7.9433 -5.5480 3.1815 15 7 7.6271 -6.0184 4.5385 16 6 8.2945 -6.1102 5.7307 17 1 9.2736 -5.6669 5.8370 18 6 7.7127 -6.7731 6.8025 19 7 8.1968 -6.6139 8.0160 20 14 6.2425 -7.8909 6.5227 21 1 4.9901 -7.1031 6.6505 22 1 6.3201 -8.4795 5.1615 23 1 6.2482 -8.9788 7.5335 24 6 6.2809 -6.3527 4.0501 25 7 3.2573 -0.8630 1.5064 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1391 34 1 3.1300 -0.7217 -1.2489 35 1 4.3350 -1.9730 4.4502 36 1 5.3461 -1.2403 3.1816 37 1 6.5660 -3.4501 4.1246 38 1 6.0597 -5.5044 2.0125 39 1 8.5717 -4.6574 3.1661 40 1 8.3121 -6.3352 2.5240 41 1 9.0039 -6.0933 8.1518 42 1 6.2104 -7.3524 3.6214 43 1 5.4928 -6.1479 4.7748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030363278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:13 Heat of formation + Delta-G solvation = 151.483044 kcal Electronic energy + Delta-G solvation = -25318.341392 eV Core-core repulsion = 21632.231628 eV Total energy + Delta-G solvation = -3686.109764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.37955 -39.81368 -38.16433 -37.77300 -33.61330 -33.47359 -33.21807 -32.13398 -29.68620 -28.04438 -28.00282 -27.57279 -25.30245 -24.68665 -23.33073 -22.17365 -20.84540 -20.41430 -19.49929 -17.61299 -17.46828 -17.29501 -16.69940 -15.99189 -15.32838 -14.91723 -14.79438 -14.55638 -14.52222 -13.91285 -13.82606 -13.54240 -13.37779 -13.23017 -13.09675 -12.95449 -12.81227 -12.46936 -12.34038 -12.04581 -11.94419 -11.89566 -11.50249 -11.37601 -10.94315 -10.92894 -10.86272 -10.52906 -10.29941 -10.16545 -9.77540 -9.66427 -9.24681 -8.76084 -8.52870 -7.21927 -6.31926 -3.25463 1.22454 1.71850 2.12152 2.75932 3.34113 3.46140 3.50884 3.64557 3.69882 3.99384 4.05747 4.15930 4.45722 4.59431 4.74931 4.86484 4.91856 4.93592 4.99688 5.08934 5.11718 5.16628 5.16733 5.17390 5.38095 5.39009 5.45617 5.57225 5.60886 5.69644 5.85351 5.89240 5.91246 6.17336 6.20450 6.24782 6.38560 6.44471 6.97653 7.09277 7.78552 8.21570 8.38084 8.41109 8.95016 9.48537 10.34617 11.17656 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002800 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.749344 B = 9998.028267 C =10214.180963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.132 5.132 6 N -0.064 5.064 7 N -0.274 5.274 8 C 0.190 3.810 9 C -0.046 4.046 10 C 0.523 3.477 11 O -0.542 6.542 12 N -0.691 5.691 13 C 0.101 3.899 14 C 0.109 3.891 15 N -0.624 5.624 16 C -0.308 4.308 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.930 5.930 20 Si 1.060 2.940 21 H -0.293 1.293 22 H -0.282 1.282 23 H -0.296 1.296 24 C 0.087 3.913 25 N -0.296 5.296 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.409 0.591 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.261 0.739 42 H 0.055 0.945 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 17.564 -18.938 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.046 5.046 6 N -0.057 5.057 7 N -0.145 5.145 8 C -0.093 4.093 9 C -0.089 4.089 10 C 0.307 3.693 11 O -0.419 6.419 12 N -0.341 5.341 13 C -0.005 4.005 14 C -0.018 4.018 15 N -0.353 5.353 16 C -0.434 4.434 17 H 0.100 0.900 18 C -0.220 4.220 19 N -0.572 5.572 20 Si 0.892 3.108 21 H -0.220 1.220 22 H -0.208 1.208 23 H -0.223 1.223 24 C -0.040 4.040 25 N -0.146 5.146 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.245 0.755 38 H 0.120 0.880 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.481 16.281 -18.679 28.700 hybrid contribution 2.050 0.824 -0.273 2.226 sum -12.431 17.105 -18.952 28.396 Atomic orbital electron populations 1.22084 0.90179 1.04683 1.04123 1.21351 0.96381 0.92620 0.79823 1.22224 1.03309 0.92168 1.03895 1.22229 1.03390 1.01212 0.94889 1.50397 1.01179 1.34993 1.18007 1.78891 1.22009 1.09227 0.95532 1.75828 1.00799 1.17823 1.20073 1.24595 0.94836 0.98250 0.91619 1.19874 0.91917 0.95959 1.01125 1.20056 0.80595 0.86809 0.81862 1.90702 1.53174 1.65547 1.32454 1.45389 1.28128 1.18028 1.42564 1.22429 0.97377 0.82790 0.97952 1.22740 0.93120 0.97634 0.88270 1.46396 1.09790 1.74601 1.04471 1.20123 1.03470 1.34087 0.85696 0.90029 1.25749 1.04530 0.99922 0.91845 1.70912 1.23045 1.43698 1.19574 0.83792 0.75250 0.76914 0.74855 1.22020 1.20845 1.22309 1.23195 0.90091 0.96076 0.94627 1.74518 1.03222 1.20667 1.16239 0.90635 0.89359 0.90547 0.90409 0.89278 0.91447 0.91270 0.89323 0.90388 0.85379 0.85924 0.75545 0.88016 0.93198 0.93369 0.92858 0.92780 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 7.91 37.16 0.29 -0.60 16 2 C 0.18 1.37 1.30 -131.81 -0.17 1.20 16 3 C -0.16 -0.88 8.66 37.16 0.32 -0.56 16 4 C -0.16 -1.07 8.67 37.16 0.32 -0.75 16 5 N -0.13 -1.62 3.73 0.49 0.00 -1.62 16 6 N -0.06 -0.93 12.24 60.35 0.74 -0.19 16 7 N -0.27 -4.47 12.50 32.45 0.41 -4.07 16 8 C 0.19 2.80 6.86 -156.62 -1.07 1.73 16 9 C -0.05 -0.56 6.33 -29.03 -0.18 -0.75 16 10 C 0.52 8.28 7.82 -10.98 -0.09 8.20 16 11 O -0.54 -10.61 15.63 5.56 0.09 -10.52 16 12 N -0.69 -10.98 5.40 -53.49 -0.29 -11.27 16 13 C 0.10 1.79 4.61 -67.68 -0.31 1.48 16 14 C 0.11 2.04 8.44 -8.52 -0.07 1.97 16 15 N -0.62 -14.76 3.62 -184.65 -0.67 -15.43 16 16 C -0.31 -8.59 11.03 -15.06 -0.17 -8.75 16 17 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 18 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 19 N -0.93 -29.03 13.70 55.49 0.76 -28.27 16 20 Si 1.06 26.93 25.50 -169.99 -4.34 22.59 16 21 H -0.29 -7.26 6.97 56.52 0.39 -6.87 16 22 H -0.28 -6.69 5.66 56.52 0.32 -6.37 16 23 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 24 C 0.09 1.85 5.44 -8.39 -0.05 1.81 16 25 N -0.30 -4.06 11.83 32.47 0.38 -3.67 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.41 6.01 8.76 -40.82 -0.36 5.65 16 38 H 0.10 1.74 7.45 -51.93 -0.39 1.35 16 39 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 42 H 0.05 1.14 7.02 -51.93 -0.36 0.77 16 43 H 0.06 1.27 6.22 -51.93 -0.32 0.95 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -36.89 358.55 -5.37 -42.27 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.59 Total: 0.50 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.27 Total: 4.27 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: 1.33 Total: -64.51 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.34 Total: 22.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.89 -5.37 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030363278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.749 kcal (2) G-P(sol) polarization free energy of solvation -36.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds