Wall clock time and date at job start Fri Apr 10 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 C 1.52998 * 109.47171 * 239.99527 * 2 1 3 5 5 N 1.46510 * 109.46856 * 119.99576 * 2 1 3 6 6 N 1.28781 * 125.44943 * 359.97411 * 5 2 1 7 7 N 1.28994 * 108.72484 * 180.02562 * 6 5 2 8 8 C 1.33316 * 107.35493 * 0.02562 * 7 6 5 9 9 C 1.50702 * 126.54852 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46623 * 90.02506 * 9 8 7 11 11 O 1.21272 * 120.00493 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99751 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00376 * 179.97438 * 12 10 9 14 14 C 1.53496 * 114.20904 * 155.00161 * 13 12 10 15 15 N 1.47062 * 87.98485 * 87.72044 * 14 13 12 16 16 C 1.36939 * 136.05593 * 207.08750 * 15 14 13 17 17 H 1.08008 * 119.99868 * 7.82597 * 16 15 14 18 18 C 1.38808 * 120.00203 * 187.82575 * 16 15 14 19 19 N 1.31618 * 119.99998 * 195.17052 * 18 16 15 20 20 Si 1.86797 * 119.99840 * 15.16580 * 18 16 15 21 21 H 1.48503 * 109.47450 * 270.00422 * 20 18 16 22 22 H 1.48503 * 109.47360 * 30.00092 * 20 18 16 23 23 H 1.48498 * 109.47360 * 150.00270 * 20 18 16 24 24 C 1.47059 * 87.88616 * 27.34176 * 15 14 13 25 25 N 1.28877 * 125.44624 * 180.30829 * 5 2 1 26 26 H 1.09003 * 109.46751 * 300.00324 * 1 2 3 27 27 H 1.08994 * 109.46489 * 60.00232 * 1 2 3 28 28 H 1.08998 * 109.47135 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46789 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46589 * 299.99692 * 3 2 1 31 31 H 1.09001 * 109.47060 * 59.99519 * 3 2 1 32 32 H 1.09005 * 109.46932 * 300.00290 * 4 2 1 33 33 H 1.08991 * 109.47080 * 60.00176 * 4 2 1 34 34 H 1.08998 * 109.46834 * 180.02562 * 4 2 1 35 35 H 1.08998 * 109.47168 * 330.02870 * 9 8 7 36 36 H 1.08997 * 109.46771 * 210.02303 * 9 8 7 37 37 H 0.97007 * 119.99743 * 359.97438 * 12 10 9 38 38 H 1.09003 * 113.27537 * 21.93512 * 13 12 10 39 39 H 1.09008 * 113.46447 * 332.93478 * 14 13 12 40 40 H 1.08996 * 113.51824 * 202.51288 * 14 13 12 41 41 H 0.96995 * 120.00365 * 354.90363 * 19 18 16 42 42 H 1.08997 * 113.47135 * 87.43718 * 24 15 14 43 43 H 1.09007 * 113.47198 * 217.88025 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1963 6 7 1.2782 -1.2170 2.1093 7 7 2.0399 -1.7371 3.0110 8 6 3.3016 -1.5217 2.6384 9 6 4.5419 -1.9487 3.3803 10 6 4.9562 -3.3218 2.9174 11 8 4.3086 -3.8966 2.0685 12 7 6.0473 -3.9104 3.4463 13 6 6.4498 -5.2454 2.9968 14 6 7.9433 -5.5480 3.1815 15 7 7.6271 -6.0184 4.5385 16 6 8.2945 -6.1102 5.7307 17 1 9.2736 -5.6669 5.8370 18 6 7.7127 -6.7731 6.8025 19 7 8.1968 -6.6139 8.0160 20 14 6.2425 -7.8909 6.5227 21 1 4.9901 -7.1031 6.6505 22 1 6.3201 -8.4795 5.1615 23 1 6.2482 -8.9788 7.5335 24 6 6.2809 -6.3527 4.0501 25 7 3.2573 -0.8630 1.5064 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 -1.7490 -1.2491 33 1 1.6768 -0.2076 -2.1391 34 1 3.1300 -0.7217 -1.2489 35 1 4.3350 -1.9730 4.4502 36 1 5.3461 -1.2403 3.1816 37 1 6.5660 -3.4501 4.1246 38 1 6.0597 -5.5044 2.0125 39 1 8.5717 -4.6574 3.1661 40 1 8.3121 -6.3352 2.5240 41 1 9.0039 -6.0933 8.1518 42 1 6.2104 -7.3524 3.6214 43 1 5.4928 -6.1479 4.7748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030363278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:12 Heat of formation + Delta-G solvation = 122.523382 kcal Electronic energy + Delta-G solvation = -25319.597177 eV Core-core repulsion = 21632.231628 eV Total energy + Delta-G solvation = -3687.365549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.39150 -41.22199 -39.57895 -38.56111 -35.11817 -34.66707 -34.25854 -33.94286 -30.83046 -29.48067 -28.51104 -28.39061 -26.93456 -25.63443 -24.83511 -23.60561 -21.87406 -21.49432 -21.14462 -19.49071 -18.71456 -18.03691 -17.83396 -17.39793 -16.77560 -16.24632 -16.04707 -15.73584 -15.30525 -15.21660 -15.18013 -15.09099 -14.62828 -14.50802 -14.10053 -13.64466 -13.43328 -13.36519 -13.22490 -13.14210 -12.87170 -12.84612 -12.75172 -12.55775 -12.31323 -12.15210 -11.95369 -11.94498 -11.86167 -11.62719 -11.39164 -11.26708 -10.93075 -10.81198 -9.99632 -9.24365 -8.57632 -5.43512 0.21567 0.92430 1.04109 1.41598 1.48056 1.52777 1.64167 2.14828 2.52961 2.80213 3.02317 3.16156 3.19252 3.53144 3.58222 3.61738 3.67252 3.75718 4.20099 4.32224 4.39276 4.40609 4.46814 4.51910 4.53419 4.61273 4.65321 4.65793 4.72192 4.72414 4.73525 4.77382 4.80698 4.94735 5.02727 5.12191 5.22075 5.22530 5.36333 5.56916 5.98774 6.52032 6.72840 7.15799 7.33357 7.35797 8.29730 8.93906 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.002800 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.749344 B = 9998.028267 C =10214.180963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.152 4.152 4 C -0.155 4.155 5 N -0.119 5.119 6 N -0.079 5.079 7 N -0.312 5.312 8 C 0.176 3.824 9 C -0.040 4.040 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.688 5.688 13 C 0.122 3.878 14 C 0.115 3.885 15 N -0.650 5.650 16 C -0.283 4.283 17 H 0.059 0.941 18 C -0.079 4.079 19 N -0.970 5.970 20 Si 1.095 2.905 21 H -0.287 1.287 22 H -0.256 1.256 23 H -0.305 1.305 24 C 0.077 3.923 25 N -0.300 5.300 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.416 0.584 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.249 0.751 42 H 0.065 0.935 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 19.076 -21.759 31.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.210 4.210 4 C -0.213 4.213 5 N -0.035 5.035 6 N -0.071 5.071 7 N -0.182 5.182 8 C -0.107 4.107 9 C -0.083 4.083 10 C 0.312 3.688 11 O -0.459 6.459 12 N -0.338 5.338 13 C 0.015 3.985 14 C -0.010 4.010 15 N -0.379 5.379 16 C -0.411 4.411 17 H 0.077 0.923 18 C -0.272 4.272 19 N -0.616 5.616 20 Si 0.923 3.077 21 H -0.215 1.215 22 H -0.181 1.181 23 H -0.233 1.233 24 C -0.049 4.049 25 N -0.151 5.151 26 H 0.087 0.913 27 H 0.144 0.856 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.252 0.748 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.351 17.823 -21.549 31.901 hybrid contribution 2.330 0.469 0.415 2.413 sum -13.021 18.292 -21.135 30.835 Atomic orbital electron populations 1.22138 0.88772 1.04163 1.05665 1.22030 0.97635 0.93594 0.78546 1.22249 1.02682 0.90662 1.05411 1.22258 1.02508 1.00610 0.95931 1.50990 1.00666 1.33566 1.18239 1.78806 1.22268 1.09906 0.96083 1.75777 1.01732 1.19243 1.21415 1.25001 0.95089 0.98540 0.92108 1.19997 0.92191 0.94383 1.01679 1.20569 0.79656 0.87671 0.80865 1.90688 1.54245 1.66780 1.34236 1.45383 1.28365 1.17394 1.42689 1.22173 0.96484 0.82547 0.97311 1.22910 0.94135 0.98463 0.85514 1.46401 1.11181 1.74948 1.05345 1.19987 1.02145 1.31406 0.87530 0.92347 1.26765 1.07039 1.01680 0.91737 1.71000 1.23689 1.45851 1.21047 0.83353 0.73182 0.75467 0.75743 1.21458 1.18109 1.23332 1.23409 0.88294 0.97975 0.95229 1.74486 1.03988 1.20710 1.15942 0.91278 0.85594 0.92083 0.91359 0.85663 0.92000 0.93110 0.85438 0.91705 0.83656 0.82324 0.74752 0.86601 0.91750 0.91236 0.94140 0.91784 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.91 71.98 0.57 -0.89 16 2 C 0.16 2.17 1.30 3.60 0.00 2.17 16 3 C -0.15 -1.30 8.66 71.98 0.62 -0.68 16 4 C -0.15 -1.78 8.67 71.98 0.62 -1.15 16 5 N -0.12 -2.82 3.73 -152.37 -0.57 -3.38 16 6 N -0.08 -2.28 12.24 37.02 0.45 -1.82 16 7 N -0.31 -10.14 12.50 -51.26 -0.64 -10.78 16 8 C 0.18 5.02 6.86 138.55 0.95 5.97 16 9 C -0.04 -0.91 6.33 29.10 0.18 -0.73 16 10 C 0.53 15.72 7.82 87.66 0.69 16.41 16 11 O -0.58 -22.00 15.63 -3.01 -0.05 -22.05 16 12 N -0.69 -20.29 5.40 -441.53 -2.39 -22.68 16 13 C 0.12 4.00 4.61 45.55 0.21 4.21 16 14 C 0.12 3.97 8.44 83.17 0.70 4.67 16 15 N -0.65 -29.62 3.62 -738.12 -2.67 -32.30 16 16 C -0.28 -15.76 11.03 84.03 0.93 -14.83 16 17 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 18 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 19 N -0.97 -62.02 13.70 21.65 0.30 -61.73 16 20 Si 1.10 54.42 25.50 68.60 1.75 56.17 16 21 H -0.29 -13.87 6.97 99.48 0.69 -13.18 16 22 H -0.26 -11.47 5.66 99.48 0.56 -10.91 16 23 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 24 C 0.08 3.12 5.44 83.26 0.45 3.57 16 25 N -0.30 -7.93 11.83 -51.20 -0.61 -8.54 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.76 16 33 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.16 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.42 11.26 8.76 -92.70 -0.81 10.44 16 38 H 0.12 3.60 7.45 -2.39 -0.02 3.58 16 39 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 42 H 0.06 2.50 7.02 -2.39 -0.02 2.48 16 43 H 0.04 1.77 6.22 -2.38 -0.01 1.76 16 Total: -1.00 -82.08 358.55 1.99 -80.08 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.02 Total: 12.51 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.40 Total: 14.51 kcal Atomic # 7 Polarization: -135.10 SS G_CDS: -6.12 Total: -141.23 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 54.42 SS G_CDS: 1.75 Total: 56.17 kcal Total: -82.08 1.99 -80.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030363278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.604 kcal (2) G-P(sol) polarization free energy of solvation -82.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds