Wall clock time and date at job start Fri Apr 10 2020 17:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00379 * 2 1 4 4 C 1.52994 * 109.47537 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47357 * 180.02562 * 4 3 2 6 6 N 1.28451 * 125.18894 * 274.51552 * 5 4 3 7 7 C 1.30861 * 110.92471 * 180.15879 * 6 5 4 8 8 C 1.39671 * 107.86407 * 359.61029 * 7 6 5 9 9 C 1.36593 * 125.19087 * 94.23806 * 5 4 3 10 10 C 1.47167 * 126.88602 * 359.97438 * 9 5 4 11 11 O 1.21625 * 119.99787 * 354.43503 * 10 9 5 12 12 N 1.34770 * 120.00031 * 174.43398 * 10 9 5 13 13 C 1.46500 * 120.00024 * 185.10761 * 12 10 9 14 14 C 1.53003 * 109.47490 * 180.02562 * 13 12 10 15 15 C 1.53941 * 113.74128 * 273.74788 * 14 13 12 16 16 N 1.47820 * 86.03629 * 222.08041 * 15 14 13 17 17 C 1.36931 * 134.45699 * 204.64493 * 16 15 14 18 18 H 1.08004 * 119.99621 * 179.86290 * 17 16 15 19 19 C 1.38813 * 120.00389 * 359.86418 * 17 16 15 20 20 N 1.31616 * 119.99656 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00097 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47161 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47236 * 119.99952 * 21 19 17 24 24 H 1.48506 * 109.46579 * 240.00136 * 21 19 17 25 25 C 1.47583 * 91.04855 * 24.55071 * 16 15 14 26 26 H 1.09000 * 109.46727 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46725 * 299.99870 * 1 2 3 28 28 H 1.08994 * 109.47045 * 59.99917 * 1 2 3 29 29 H 1.09001 * 109.46616 * 59.99566 * 3 2 1 30 30 H 1.09007 * 109.46912 * 300.00528 * 3 2 1 31 31 H 1.09004 * 109.46918 * 60.00328 * 4 3 2 32 32 H 1.09000 * 109.47381 * 300.00549 * 4 3 2 33 33 H 1.07997 * 126.06931 * 179.87078 * 7 6 5 34 34 H 1.08001 * 127.32151 * 180.24967 * 8 7 6 35 35 H 0.97000 * 120.00313 * 5.11406 * 12 10 9 36 36 H 1.08999 * 109.47232 * 300.00539 * 13 12 10 37 37 H 1.09007 * 109.46943 * 60.00424 * 13 12 10 38 38 H 1.09003 * 112.93967 * 45.33390 * 14 13 12 39 39 H 1.08998 * 113.77265 * 336.34276 * 15 14 13 40 40 H 1.08999 * 113.77306 * 107.74867 * 15 14 13 41 41 H 0.96998 * 119.99682 * 179.97438 * 20 19 17 42 42 H 1.09003 * 113.77048 * 221.15694 * 25 16 15 43 43 H 1.08991 * 113.77234 * 89.75085 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 7 4.3566 3.2334 -1.0462 7 6 4.8989 4.3801 -0.7245 8 6 5.0293 4.4175 0.6656 9 6 4.5274 3.2078 1.1135 10 6 4.4377 2.7513 2.5097 11 8 3.8797 1.7030 2.7721 12 7 4.9739 3.4950 3.4975 13 6 4.9841 2.9889 4.8723 14 6 5.6440 4.0197 5.7904 15 6 7.1768 3.8955 5.8610 16 7 7.0258 4.1245 7.3136 17 6 7.8435 4.6123 8.2977 18 1 7.4833 4.6827 9.3134 19 6 9.1353 5.0164 7.9898 20 7 9.5740 4.9311 6.7518 21 14 10.2510 5.6813 9.3325 22 1 9.5247 5.6751 10.6277 23 1 11.4609 4.8270 9.4388 24 1 10.6539 7.0709 8.9981 25 6 5.6399 3.6186 7.2767 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8567 0.6439 -0.8909 32 1 3.8575 0.6435 0.8890 33 1 5.1897 5.1610 -1.4116 34 1 5.4351 5.2198 1.2639 35 1 5.3530 4.3653 3.2983 36 1 3.9604 2.8119 5.2019 37 1 5.5451 2.0551 4.9116 38 1 5.2939 5.0359 5.6091 39 1 7.5492 2.9026 5.6092 40 1 7.7067 4.6943 5.3421 41 1 10.4766 5.2139 6.5367 42 1 4.9448 4.1966 7.8858 43 1 5.5598 2.5442 7.4415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031756490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:19 Heat of formation + Delta-G solvation = 56.998415 kcal Electronic energy + Delta-G solvation = -24862.082585 eV Core-core repulsion = 21139.582909 eV Total energy + Delta-G solvation = -3722.499676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.72403 -39.46520 -38.29255 -37.96766 -34.81451 -33.88786 -32.27435 -31.18781 -29.56323 -28.75331 -26.64366 -26.02835 -24.83762 -23.91007 -23.10354 -22.10149 -21.25988 -20.17720 -19.13381 -18.00853 -16.97965 -16.72959 -16.39394 -16.32747 -16.00366 -15.59029 -15.24424 -14.92039 -14.70663 -14.54851 -14.12725 -13.85636 -13.68692 -13.44885 -13.04552 -12.94933 -12.43329 -12.37771 -11.84003 -11.66673 -11.45506 -11.37511 -11.03781 -11.00279 -10.76242 -10.62214 -10.18706 -10.06317 -9.84438 -9.81044 -9.48698 -9.43621 -9.25347 -8.90956 -8.83256 -6.91229 -5.79978 -3.12148 1.09949 2.03640 2.43629 3.04065 3.20454 3.37065 3.42559 3.45014 3.63858 4.29503 4.42501 4.51111 4.57644 4.73325 4.91725 4.97222 5.00827 5.02835 5.11417 5.24626 5.30871 5.31706 5.32750 5.38885 5.50978 5.58428 5.61251 5.76448 5.95942 6.16727 6.27525 6.30594 6.46081 6.48139 6.57996 6.67656 6.71108 7.18115 7.30755 7.44016 7.52096 7.85993 7.95050 8.10234 9.01882 9.67992 10.56322 11.37317 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.023460 B = 0.002575 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.246710 B =10871.135617 C =11777.892180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.056 3.944 4 C 0.119 3.881 5 N -0.257 5.257 6 N -0.280 5.280 7 C 0.000 4.000 8 C -0.185 4.185 9 C -0.031 4.031 10 C 0.585 3.415 11 O -0.543 6.543 12 N -0.703 5.703 13 C 0.132 3.868 14 C -0.154 4.154 15 C 0.168 3.832 16 N -0.613 5.613 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.129 3.871 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.188 0.812 34 H 0.165 0.835 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.253 0.747 42 H 0.046 0.954 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 -3.541 -15.779 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.303 6.303 3 C -0.021 4.021 4 C -0.001 4.001 5 N -0.046 5.046 6 N -0.112 5.112 7 C -0.176 4.176 8 C -0.214 4.214 9 C -0.160 4.160 10 C 0.370 3.630 11 O -0.421 6.421 12 N -0.353 5.353 13 C 0.008 3.992 14 C -0.174 4.174 15 C 0.043 3.957 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.002 3.998 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.205 0.795 34 H 0.182 0.818 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.746 -5.129 -16.315 23.248 hybrid contribution 1.028 1.463 1.234 2.173 sum -14.719 -3.666 -15.081 21.390 Atomic orbital electron populations 1.22777 0.80119 1.03102 1.00236 1.87798 1.20389 1.26579 1.95530 1.22622 0.92530 0.85660 1.01336 1.21846 0.92539 0.78448 1.07307 1.45474 1.42664 1.14314 1.02176 1.73215 1.18425 1.05787 1.13758 1.23608 1.03084 0.95798 0.95106 1.22355 1.05861 0.97475 0.95748 1.21546 1.09207 0.95252 0.89950 1.16930 0.79029 0.84049 0.83024 1.90793 1.43836 1.23622 1.83891 1.45757 1.59828 1.21647 1.08069 1.21554 1.01033 0.97966 0.78653 1.23834 0.99922 0.98156 0.95480 1.22366 0.88812 0.98852 0.85683 1.45989 1.10144 1.72185 1.05602 1.19073 0.93214 1.33963 0.88736 0.90186 1.24788 0.97099 1.01902 0.96752 1.69815 1.17325 1.52899 1.16854 0.86047 0.80684 0.78293 0.80745 1.20455 1.21738 1.21684 1.22481 0.88593 0.96726 0.91952 0.89142 0.93711 0.93953 0.92239 0.92571 0.87639 0.85431 0.79499 0.81785 0.75896 0.91501 0.91042 0.89053 0.95453 0.90880 0.93679 0.93593 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.17 10.70 -35.23 -0.38 -4.55 16 3 C 0.06 0.60 6.26 37.15 0.23 0.83 16 4 C 0.12 1.34 6.23 -4.05 -0.03 1.31 16 5 N -0.26 -3.19 3.35 -57.14 -0.19 -3.38 16 6 N -0.28 -3.39 11.90 30.59 0.36 -3.03 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -1.93 10.50 -38.98 -0.41 -2.34 16 9 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 10 C 0.58 8.17 7.78 -12.64 -0.10 8.07 16 11 O -0.54 -8.86 14.68 5.26 0.08 -8.79 16 12 N -0.70 -9.10 5.54 -61.46 -0.34 -9.44 16 13 C 0.13 1.91 5.52 -4.04 -0.02 1.89 16 14 C -0.15 -2.60 3.93 -89.69 -0.35 -2.95 16 15 C 0.17 3.73 7.08 -2.84 -0.02 3.71 16 16 N -0.61 -15.33 3.70 -177.69 -0.66 -15.98 16 17 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 18 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -26.89 11.39 55.49 0.63 -26.25 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.13 2.50 8.51 -2.96 -0.03 2.48 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.13 1.60 6.20 -51.93 -0.32 1.28 16 33 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.16 1.29 7.59 -52.49 -0.40 0.90 16 35 H 0.41 4.51 7.51 -40.82 -0.31 4.20 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.13 7.88 -51.92 -0.41 0.72 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.64 7.92 -51.93 -0.41 0.22 16 40 H 0.07 1.78 7.16 -51.93 -0.37 1.41 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -33.57 363.99 -7.09 -40.66 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -6.41 Total: 1.88 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.65 Total: 6.52 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.19 Total: -58.09 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.30 Total: -13.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.57 -7.09 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031756490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.655 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds