Wall clock time and date at job start Fri Apr 10 2020 17:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99747 * 2 1 4 4 C 1.46897 * 110.99831 * 123.95115 * 2 1 3 5 5 C 1.50703 * 109.47170 * 170.00120 * 4 2 1 6 6 C 1.35316 * 126.66514 * 90.28518 * 5 4 2 7 7 C 1.42267 * 103.91945 * 180.09210 * 6 5 4 8 8 C 1.48337 * 126.93821 * 179.90866 * 7 6 5 9 9 O 1.21503 * 119.99471 * 359.71189 * 8 7 6 10 10 N 1.34778 * 120.00187 * 179.70408 * 8 7 6 11 11 C 1.46494 * 119.99683 * 180.27432 * 10 8 7 12 12 C 1.53008 * 109.46915 * 179.72886 * 11 10 8 13 13 C 1.53947 * 113.74029 * 273.74211 * 12 11 10 14 14 N 1.47808 * 86.03331 * 222.08338 * 13 12 11 15 15 C 1.36948 * 134.45067 * 204.64362 * 14 13 12 16 16 H 1.07999 * 119.99315 * 173.35065 * 15 14 13 17 17 C 1.38810 * 120.00158 * 353.35330 * 15 14 13 18 18 N 1.31614 * 120.00257 * 5.06287 * 17 15 14 19 19 Si 1.86796 * 119.99558 * 185.06355 * 17 15 14 20 20 H 1.48503 * 109.47471 * 94.98980 * 19 17 15 21 21 H 1.48505 * 109.46728 * 214.98528 * 19 17 15 22 22 H 1.48498 * 109.47404 * 334.98290 * 19 17 15 23 23 C 1.47575 * 91.05524 * 24.55489 * 14 13 12 24 24 N 1.30980 * 106.12574 * 359.64951 * 7 6 5 25 25 O 1.20903 * 111.44169 * 0.22257 * 24 7 6 26 26 H 1.08996 * 109.47427 * 296.04724 * 1 2 3 27 27 H 1.09005 * 109.47136 * 56.04791 * 1 2 3 28 28 H 1.08998 * 109.47283 * 176.04360 * 1 2 3 29 29 H 1.09004 * 109.46988 * 183.95510 * 3 2 1 30 30 H 1.09006 * 109.47525 * 303.95137 * 3 2 1 31 31 H 1.08998 * 109.47334 * 63.94929 * 3 2 1 32 32 H 1.09002 * 109.47123 * 50.00154 * 4 2 1 33 33 H 1.08998 * 109.47292 * 290.00478 * 4 2 1 34 34 H 1.08001 * 128.03952 * 359.96761 * 6 5 4 35 35 H 0.96998 * 119.99782 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.47476 * 299.72894 * 11 10 8 37 37 H 1.09008 * 109.47265 * 59.73411 * 11 10 8 38 38 H 1.09002 * 112.94017 * 45.33394 * 12 11 10 39 39 H 1.08999 * 113.76922 * 336.35409 * 13 12 11 40 40 H 1.09008 * 113.76692 * 107.74610 * 13 12 11 41 41 H 0.96995 * 120.00299 * 180.02562 * 18 17 15 42 42 H 1.09000 * 113.76747 * 221.15317 * 23 14 13 43 43 H 1.08992 * 113.76891 * 89.75010 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.4817 -0.9524 0.9729 6 6 4.4548 -0.1308 1.4303 7 6 5.6595 -0.7591 1.0085 8 6 7.0438 -0.2804 1.2425 9 8 7.2341 0.7551 1.8490 10 7 8.0905 -0.9941 0.7827 11 6 9.4578 -0.5243 1.0191 12 6 10.4504 -1.5135 0.4045 13 6 10.8189 -2.6817 1.3369 14 7 12.2065 -2.4837 0.8676 15 6 13.3126 -3.2863 0.7788 16 1 14.2047 -2.9239 0.2898 17 6 13.2870 -4.5655 1.3173 18 7 12.1706 -5.0439 1.8242 19 14 14.8372 -5.6077 1.3225 20 1 15.5316 -5.4557 2.6263 21 1 14.4757 -7.0334 1.1174 22 1 15.7365 -5.1627 0.2278 23 6 11.9208 -1.0755 0.5313 24 7 5.2997 -1.8486 0.3767 25 8 4.0968 -1.9673 0.3501 26 1 -0.3634 0.4512 0.9232 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3433 -0.0709 30 1 1.5898 1.9164 -0.8525 31 1 1.7043 1.8724 0.9232 32 1 1.5089 -1.7406 1.1757 33 1 1.7974 -0.2247 2.0628 34 1 4.3428 0.7893 1.9846 35 1 7.9386 -1.8207 0.2983 36 1 9.5899 0.4554 0.5601 37 1 9.6361 -0.4500 2.0919 38 1 10.1707 -1.8263 -0.6015 39 1 10.6772 -2.4610 2.3949 40 1 10.3848 -3.6359 1.0383 41 1 12.1528 -5.9376 2.2008 42 1 12.3647 -0.7497 -0.4094 43 1 12.1034 -0.3820 1.3521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031799298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:24 Heat of formation + Delta-G solvation = 68.562148 kcal Electronic energy + Delta-G solvation = -24495.409775 eV Core-core repulsion = 20773.411540 eV Total energy + Delta-G solvation = -3721.998235 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.19770 -40.92012 -39.65966 -38.53804 -35.94792 -35.09149 -34.22269 -33.40329 -30.70513 -28.58793 -28.30455 -28.01015 -26.59889 -25.57451 -23.96812 -23.65036 -22.92254 -21.48773 -20.45390 -18.95106 -18.83865 -18.63800 -17.91544 -17.24792 -17.01041 -16.44296 -16.21303 -16.20730 -16.08473 -15.79017 -15.46176 -14.92252 -14.75093 -14.52722 -14.11810 -14.01687 -13.36213 -13.30606 -13.14370 -12.91151 -12.86143 -12.76153 -12.58675 -12.53831 -12.39332 -12.26576 -11.90144 -11.69505 -11.57369 -11.48891 -11.24538 -10.89538 -10.65092 -10.24691 -9.36322 -8.94006 -7.94664 -5.27342 -0.00036 0.56278 1.43579 1.45811 1.54774 1.75651 1.97746 1.99312 2.45405 2.83468 3.05411 3.25589 3.35234 3.45443 3.69482 3.86864 3.96382 4.03679 4.12280 4.26879 4.29495 4.45745 4.52358 4.54129 4.60739 4.72348 4.76165 4.78867 4.79547 4.83162 4.86071 5.03932 5.06052 5.13577 5.20420 5.22527 5.50290 5.59183 5.90338 5.92668 6.01859 6.22562 6.83372 6.88893 7.00501 7.57881 8.53900 9.23221 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.031397 B = 0.002240 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.582211 B =12495.500323 C =13100.238997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.563 5.563 3 C 0.015 3.985 4 C 0.133 3.867 5 C -0.009 4.009 6 C -0.179 4.179 7 C -0.046 4.046 8 C 0.596 3.404 9 O -0.555 6.555 10 N -0.702 5.702 11 C 0.140 3.860 12 C -0.119 4.119 13 C 0.168 3.832 14 N -0.646 5.646 15 C -0.236 4.236 16 H 0.086 0.914 17 C -0.070 4.070 18 N -0.954 5.954 19 Si 0.979 3.021 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.264 1.264 23 C 0.129 3.871 24 N -0.345 5.345 25 O 0.135 5.865 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.193 0.807 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.014 0.986 40 H 0.037 0.963 41 H 0.249 0.751 42 H 0.065 0.935 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.568 12.414 -2.983 29.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.288 5.288 3 C -0.133 4.133 4 C 0.005 3.995 5 C -0.072 4.072 6 C -0.202 4.202 7 C -0.203 4.203 8 C 0.380 3.620 9 O -0.433 6.433 10 N -0.353 5.353 11 C 0.017 3.983 12 C -0.138 4.138 13 C 0.042 3.958 14 N -0.372 5.372 15 C -0.364 4.364 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.807 3.193 20 H -0.216 1.216 21 H -0.221 1.221 22 H -0.189 1.189 23 C 0.004 3.996 24 N -0.044 5.044 25 O 0.056 5.944 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.140 0.860 33 H 0.114 0.886 34 H 0.211 0.789 35 H 0.248 0.752 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.276 11.699 -3.561 28.079 hybrid contribution 0.627 -0.198 1.226 1.391 sum -24.649 11.501 -2.335 27.300 Atomic orbital electron populations 1.22449 0.84351 1.03596 1.01736 1.61882 1.09981 1.14663 1.42278 1.22524 1.00576 0.88299 1.01874 1.20749 0.82690 1.02133 0.93961 1.24758 0.98285 0.87975 0.96228 1.22622 0.88233 1.03669 1.05717 1.23443 0.96974 0.95416 1.04500 1.17094 0.82732 0.83360 0.78770 1.90764 1.85488 1.24573 1.42465 1.45913 1.06009 1.26883 1.56459 1.21377 0.78505 0.97803 1.00648 1.23454 0.94282 0.95906 1.00208 1.22201 0.84011 0.95598 0.93954 1.46374 1.09152 1.07561 1.74133 1.19460 0.91892 0.94831 1.30218 0.89600 1.25707 1.00469 0.99137 1.01016 1.70017 1.26795 1.17178 1.46303 0.85046 0.78864 0.77474 0.77901 1.21575 1.22080 1.18885 1.22687 0.91357 0.86611 0.98910 1.74231 0.94125 1.18594 1.17409 1.84773 1.12691 1.40872 1.56015 0.94059 0.90578 0.90049 0.92588 0.90462 0.93803 0.86047 0.88553 0.78943 0.75194 0.89488 0.91900 0.88032 0.96801 0.94473 0.94260 0.91693 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.57 127.69 1.22 1.37 16 2 N -0.56 -5.88 5.01 -953.47 -4.78 -10.66 16 3 C 0.02 0.16 9.29 127.69 1.19 1.34 16 4 C 0.13 1.19 5.52 85.56 0.47 1.67 16 5 C -0.01 -0.14 6.34 25.01 0.16 0.02 16 6 C -0.18 -3.57 9.60 22.60 0.22 -3.35 16 7 C -0.05 -1.22 7.19 42.96 0.31 -0.91 16 8 C 0.60 18.51 7.85 86.93 0.68 19.20 16 9 O -0.56 -19.69 16.95 -3.72 -0.06 -19.75 16 10 N -0.70 -21.13 5.55 -465.48 -2.58 -23.72 16 11 C 0.14 4.34 5.51 86.38 0.48 4.82 16 12 C -0.12 -4.25 3.93 -10.13 -0.04 -4.29 16 13 C 0.17 8.07 6.99 86.44 0.60 8.67 16 14 N -0.65 -33.64 3.70 -716.22 -2.65 -36.29 16 15 C -0.24 -13.47 10.70 84.03 0.90 -12.58 16 16 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 18 N -0.95 -59.01 11.51 21.65 0.25 -58.76 16 19 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 C 0.13 5.08 8.51 86.49 0.74 5.82 16 24 N -0.35 -9.18 11.84 -49.52 -0.59 -9.77 16 25 O 0.14 2.97 11.18 71.87 0.80 3.77 16 26 H 0.04 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.08 0.41 8.12 -2.38 -0.02 0.39 16 28 H 0.08 0.34 8.12 -2.39 -0.02 0.32 16 29 H 0.06 0.77 6.35 -2.39 -0.02 0.76 16 30 H 0.08 0.71 8.12 -2.38 -0.02 0.69 16 31 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 0.69 8.06 -2.39 -0.02 0.67 16 33 H 0.10 0.49 8.12 -2.39 -0.02 0.47 16 34 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.41 11.94 8.23 -92.71 -0.76 11.17 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.11 7.88 -2.38 -0.02 2.09 16 38 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.01 0.71 7.92 -2.39 -0.02 0.69 16 40 H 0.04 2.00 7.37 -2.38 -0.02 1.98 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 Total: -1.00 -74.17 364.42 0.07 -74.10 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.26 Total: 14.36 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 7.39 Total: 18.13 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -10.35 Total: -139.19 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.74 Total: -15.98 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -74.17 0.07 -74.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031799298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.666 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds