Wall clock time and date at job start Fri Apr 10 2020 17:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99997 * 2 1 4 4 C 1.52993 * 109.47314 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88387 * 125.00023 * 5 4 3 7 7 C 1.35367 * 107.22544 * 179.70874 * 6 5 4 8 8 C 1.41494 * 105.50551 * 0.26675 * 7 6 5 9 9 C 1.47709 * 126.51988 * 179.97438 * 8 7 6 10 10 O 1.21577 * 119.99905 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00105 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99798 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46986 * 180.02562 * 12 11 9 14 14 C 1.53946 * 113.74228 * 273.74043 * 13 12 11 15 15 N 1.47808 * 86.03695 * 222.08400 * 14 13 12 16 16 C 1.36946 * 134.45829 * 204.64923 * 15 14 13 17 17 H 1.07994 * 119.99820 * 179.86511 * 16 15 14 18 18 C 1.38810 * 119.99807 * 359.85759 * 16 15 14 19 19 N 1.31619 * 119.99814 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00078 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46805 * 60.00347 * 20 18 16 22 22 H 1.48501 * 109.47110 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47413 * 300.00594 * 20 18 16 24 24 C 1.47581 * 91.05285 * 24.54526 * 15 14 13 25 25 N 1.28473 * 124.88404 * 305.18699 * 5 4 3 26 26 H 1.09010 * 109.46874 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47572 * 299.99824 * 1 2 3 28 28 H 1.09000 * 109.47415 * 60.00252 * 1 2 3 29 29 H 1.08999 * 109.47012 * 59.99767 * 3 2 1 30 30 H 1.08998 * 109.46703 * 300.00468 * 3 2 1 31 31 H 1.08999 * 109.47196 * 59.99972 * 4 3 2 32 32 H 1.08999 * 109.46971 * 300.00139 * 4 3 2 33 33 H 1.08002 * 126.38962 * 359.97438 * 6 5 4 34 34 H 1.08008 * 127.24656 * 180.28107 * 7 6 5 35 35 H 0.96993 * 120.00018 * 0.02562 * 11 9 8 36 36 H 1.09001 * 109.46873 * 299.99545 * 12 11 9 37 37 H 1.08996 * 109.47205 * 60.00127 * 12 11 9 38 38 H 1.09006 * 112.94585 * 45.33187 * 13 12 11 39 39 H 1.09001 * 113.76711 * 336.34881 * 14 13 12 40 40 H 1.09002 * 113.76815 * 107.74553 * 14 13 12 41 41 H 0.97005 * 120.00004 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.77538 * 221.15097 * 24 15 14 43 43 H 1.09003 * 113.76573 * 89.75406 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 5.0253 2.9700 0.9091 7 6 5.3398 4.2420 0.5695 8 6 4.5760 4.5245 -0.5876 9 6 4.5651 5.7920 -1.3459 10 8 5.2624 6.7210 -0.9871 11 7 3.7828 5.9183 -2.4362 12 6 3.7724 7.1753 -3.1885 13 6 2.8075 7.0547 -4.3698 14 6 3.4452 6.4447 -5.6312 15 7 2.7100 7.4849 -6.3811 16 6 2.2534 7.5979 -7.6673 17 1 1.7258 8.4879 -7.9767 18 6 2.4690 6.5685 -8.5732 19 7 3.1118 5.4837 -8.1959 20 14 1.8469 6.7228 -10.3278 21 1 2.4727 7.9051 -10.9726 22 1 2.2029 5.4983 -11.0887 23 1 0.3711 6.8881 -10.3170 24 6 2.6633 8.3512 -5.1873 25 7 3.8756 3.4416 -0.8599 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8574 0.6437 -0.8891 32 1 3.8566 0.6440 0.8908 33 1 5.4196 2.4145 1.7472 34 1 6.0290 4.9023 1.0751 35 1 3.2267 5.1770 -2.7226 36 1 3.4483 7.9864 -2.5365 37 1 4.7759 7.3856 -3.5586 38 1 1.8552 6.6005 -4.0959 39 1 4.5287 6.5558 -5.6733 40 1 3.1118 5.4291 -5.8448 41 1 3.2628 4.7644 -8.8291 42 1 1.7070 8.8550 -5.0470 43 1 3.5167 9.0235 -5.0987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031837011.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:28 Heat of formation + Delta-G solvation = 58.481464 kcal Electronic energy + Delta-G solvation = -24519.444711 eV Core-core repulsion = 20797.009345 eV Total energy + Delta-G solvation = -3722.435366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.83983 -39.29109 -38.41753 -37.84380 -34.33293 -34.23043 -32.14850 -30.95181 -29.95568 -28.69401 -26.87320 -25.94604 -24.75358 -24.25841 -22.54348 -21.67676 -21.54012 -20.01238 -18.96959 -18.00560 -17.17266 -16.71867 -16.59521 -16.36853 -15.95199 -15.71619 -15.22044 -14.99624 -14.63522 -14.19985 -14.12096 -13.80524 -13.56050 -13.34907 -13.09269 -12.81099 -12.46243 -12.28253 -12.08053 -11.80173 -11.36612 -11.28387 -11.04185 -10.95162 -10.70326 -10.54508 -10.20673 -10.11851 -9.75983 -9.71070 -9.45738 -9.38912 -9.25518 -8.76677 -8.71451 -6.84169 -5.73332 -3.05529 1.49488 1.97581 2.03325 3.27901 3.41543 3.45082 3.46552 3.47154 3.53806 4.08081 4.37149 4.48293 4.55583 4.57636 4.71301 4.89202 4.93528 5.05591 5.15226 5.21057 5.26050 5.30005 5.37605 5.40936 5.50597 5.61385 5.70913 5.90004 6.09096 6.22344 6.30428 6.40765 6.46998 6.58087 6.61726 6.69608 6.81120 7.26684 7.40299 7.57913 7.59480 7.87095 8.01497 8.39561 9.07882 9.74173 10.63866 11.43701 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.002939 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.302141 B = 9524.443615 C =11232.764744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.009 4.009 9 C 0.600 3.400 10 O -0.540 6.540 11 N -0.707 5.707 12 C 0.130 3.870 13 C -0.153 4.153 14 C 0.169 3.831 15 N -0.613 5.613 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.129 3.871 25 N -0.259 5.259 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.408 0.592 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -10.916 22.160 24.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.073 5.073 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.169 4.169 9 C 0.383 3.617 10 O -0.415 6.415 11 N -0.358 5.358 12 C 0.006 3.994 13 C -0.173 4.173 14 C 0.044 3.956 15 N -0.339 5.339 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.002 3.998 25 N -0.095 5.095 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.306 -11.073 21.289 24.032 hybrid contribution -0.077 0.147 -0.568 0.591 sum -1.383 -10.926 20.721 23.466 Atomic orbital electron populations 1.22802 0.79698 1.03202 1.00595 1.87767 1.20778 1.26654 1.95645 1.22652 0.92095 0.85667 1.02457 1.21679 0.93133 0.78524 1.06245 1.45316 1.31334 1.11460 1.19173 1.22872 0.98072 0.96657 0.98345 1.21799 1.04498 0.96025 0.98320 1.22074 1.01269 0.94165 0.99430 1.16893 0.79963 0.84761 0.80049 1.90782 1.42432 1.39507 1.68822 1.45925 1.44611 1.17723 1.27510 1.21506 1.00605 0.84794 0.92504 1.23801 0.98912 1.00903 0.93680 1.22352 0.93819 0.95504 0.83962 1.45976 1.64339 1.16453 1.07165 1.18987 1.29298 1.01940 0.84869 0.90327 1.24780 1.00815 0.96648 0.98256 1.69810 1.45610 1.07151 1.34302 0.86204 0.78421 0.76833 0.84316 1.21218 1.21574 1.21111 1.22486 0.98383 0.92520 0.86384 1.73536 1.22692 0.97688 1.15535 0.89112 0.93821 0.93360 0.92525 0.90985 0.87724 0.87000 0.80029 0.81903 0.75725 0.91730 0.91164 0.89221 0.95449 0.90984 0.93645 0.93683 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.18 10.70 -35.23 -0.38 -3.56 16 3 C 0.05 0.37 6.04 37.15 0.22 0.60 16 4 C 0.12 0.84 6.77 -4.05 -0.03 0.81 16 5 N -0.28 -2.72 3.41 -61.33 -0.21 -2.93 16 6 C -0.02 -0.15 11.40 -17.17 -0.20 -0.34 16 7 C -0.18 -2.02 10.81 -39.37 -0.43 -2.44 16 8 C -0.01 -0.12 7.13 -82.77 -0.59 -0.71 16 9 C 0.60 9.74 7.83 -12.39 -0.10 9.65 16 10 O -0.54 -10.18 16.93 5.30 0.09 -10.09 16 11 N -0.71 -10.99 5.55 -61.29 -0.34 -11.33 16 12 C 0.13 2.13 5.51 -4.04 -0.02 2.11 16 13 C -0.15 -2.84 3.93 -89.69 -0.35 -3.19 16 14 C 0.17 3.99 7.08 -2.84 -0.02 3.97 16 15 N -0.61 -16.00 3.70 -177.71 -0.66 -16.65 16 16 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.65 11.39 55.49 0.63 -27.02 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.13 2.65 8.51 -2.97 -0.03 2.62 16 25 N -0.26 -3.29 11.35 33.42 0.38 -2.91 16 26 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.44 8.04 -51.93 -0.42 0.02 16 33 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.16 1.66 8.06 -52.48 -0.42 1.23 16 35 H 0.41 5.97 8.20 -40.82 -0.33 5.63 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.24 7.88 -51.93 -0.41 0.83 16 38 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 40 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 41 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.33 368.90 -7.18 -42.51 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.56 Total: 1.56 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.68 Total: 7.50 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.20 Total: -60.86 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.29 Total: -13.65 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.33 -7.18 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031837011.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.991 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds