Wall clock time and date at job start Fri Apr 10 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99554 * 2 1 4 4 C 1.46902 * 110.99729 * 123.95182 * 2 1 3 5 5 C 1.53000 * 109.46649 * 170.00017 * 4 2 1 6 6 C 1.52999 * 109.47097 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47404 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00012 * 270.00494 * 7 6 5 9 9 C 1.50705 * 109.46797 * 269.99611 * 8 7 6 10 10 H 1.07998 * 120.00210 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00082 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99584 * 0.02562 * 11 9 8 13 13 Si 1.86788 * 120.00289 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47292 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47200 * 119.99936 * 13 11 9 16 16 H 1.48501 * 109.47538 * 240.00146 * 13 11 9 17 17 C 1.34783 * 119.99963 * 89.99975 * 7 6 5 18 18 O 1.21281 * 119.99757 * 359.97438 * 17 7 6 19 19 C 1.50701 * 119.99897 * 180.02562 * 17 7 6 20 20 H 1.08996 * 115.51038 * 283.14250 * 19 17 7 21 21 C 1.56971 * 118.41615 * 136.99728 * 19 17 7 22 22 H 1.09003 * 119.62538 * 142.01819 * 21 19 17 23 23 C 1.54421 * 118.77169 * 345.29135 * 21 19 17 24 24 C 1.55669 * 103.30503 * 321.29335 * 23 21 19 25 25 C 1.52488 * 102.58413 * 321.20932 * 24 23 21 26 26 O 1.20755 * 127.57807 * 219.16360 * 25 24 23 27 27 C 1.51833 * 104.84422 * 38.90773 * 25 24 23 28 28 H 1.09000 * 117.25625 * 196.48935 * 27 25 24 29 29 H 1.08998 * 109.47461 * 296.04512 * 1 2 3 30 30 H 1.08998 * 109.47315 * 56.04736 * 1 2 3 31 31 H 1.09002 * 109.47063 * 176.04339 * 1 2 3 32 32 H 1.08999 * 109.46387 * 183.95292 * 3 2 1 33 33 H 1.08998 * 109.46993 * 303.95063 * 3 2 1 34 34 H 1.08995 * 109.47162 * 63.95509 * 3 2 1 35 35 H 1.08998 * 109.46879 * 50.00201 * 4 2 1 36 36 H 1.08996 * 109.47124 * 290.00098 * 4 2 1 37 37 H 1.09003 * 109.46932 * 60.00238 * 5 4 2 38 38 H 1.08994 * 109.47160 * 300.00366 * 5 4 2 39 39 H 1.09003 * 109.47050 * 60.00292 * 6 5 4 40 40 H 1.09005 * 109.46990 * 300.00375 * 6 5 4 41 41 H 1.09001 * 109.47479 * 29.99672 * 8 7 6 42 42 H 1.09003 * 109.47233 * 150.00086 * 8 7 6 43 43 H 0.97001 * 120.00054 * 180.02562 * 12 11 9 44 44 H 1.09001 * 110.58531 * 78.79219 * 23 21 19 45 45 H 1.09001 * 110.59314 * 201.55188 * 23 21 19 46 46 H 1.08998 * 110.39546 * 203.19490 * 24 23 21 47 47 H 1.08993 * 111.38204 * 79.67979 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9704 6 6 4.0526 -1.7536 2.1549 7 7 5.4976 -1.9344 1.9951 8 6 6.0149 -3.1049 1.2820 9 6 6.2368 -4.2307 2.2591 10 1 6.0143 -4.0885 3.3063 11 6 6.7239 -5.4421 1.8161 12 7 6.9953 -5.6150 0.5409 13 14 6.9996 -6.8372 3.0272 14 1 6.6203 -6.3904 4.3917 15 1 6.1649 -8.0024 2.6385 16 1 8.4321 -7.2282 3.0142 17 6 6.3511 -1.0238 2.5040 18 8 5.9227 -0.0545 3.0937 19 6 7.8375 -1.2095 2.3391 20 1 8.2946 -1.9463 2.9995 21 6 8.7077 0.0382 1.9519 22 1 9.6978 0.1617 2.3908 23 6 7.9985 1.3041 1.4237 24 6 6.8634 0.7306 0.5260 25 6 7.5422 -0.4553 -0.1509 26 8 7.4184 -0.8198 -1.2954 27 6 8.4131 -1.0731 0.9286 28 1 9.1948 -1.7610 0.6064 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 3.0827 1.3433 -0.0708 33 1 1.5897 1.9163 -0.8525 34 1 1.7043 1.8724 0.9233 35 1 1.5089 -1.7406 1.1756 36 1 1.7974 -0.2247 2.0628 37 1 3.9909 0.0194 0.9323 38 1 3.7023 -1.4965 0.0452 39 1 3.5661 -2.7283 2.1924 40 1 3.8546 -1.2127 3.0803 41 1 5.2950 -3.4171 0.5255 42 1 6.9593 -2.8496 0.8014 43 1 7.3376 -6.4674 0.2291 44 1 7.5674 1.8737 2.2471 45 1 8.6918 1.9223 0.8533 46 1 6.5527 1.4699 -0.2122 47 1 6.0137 0.3993 1.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906414570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:35 Heat of formation + Delta-G solvation = -30.024739 kcal Electronic energy + Delta-G solvation = -27262.540165 eV Core-core repulsion = 23639.807225 eV Total energy + Delta-G solvation = -3622.732939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.88724 -38.53297 -37.62345 -36.63148 -35.20040 -32.92816 -31.72153 -30.68832 -27.63030 -27.41456 -26.49465 -26.09716 -24.33346 -22.98520 -22.14700 -20.68027 -20.30415 -19.17976 -17.81111 -17.02299 -16.39755 -15.92817 -15.80437 -15.48802 -15.25623 -14.97456 -14.65005 -14.47755 -14.10173 -13.95005 -13.69607 -13.43459 -13.01530 -12.64575 -12.43612 -12.33861 -12.19289 -12.05307 -11.85882 -11.68840 -11.45765 -11.44986 -11.25053 -11.17889 -10.93374 -10.88522 -10.74891 -10.31020 -10.25671 -10.03558 -9.79137 -9.71653 -9.34036 -8.90301 -8.54017 -8.34925 -7.81093 -6.16995 -4.25445 2.11044 3.17241 3.20733 3.29923 3.33165 3.51322 3.91079 4.08158 4.31276 4.35683 4.68672 4.73430 4.94377 5.07446 5.13328 5.16003 5.20974 5.24507 5.28507 5.36241 5.50548 5.53816 5.59008 5.62437 5.66968 5.72260 5.79058 5.83131 5.89162 5.97583 6.01378 6.05294 6.10391 6.18954 6.22831 6.29075 6.44061 6.59476 6.74379 7.03049 7.05884 7.23636 7.48121 7.75533 7.80855 8.05327 8.22869 8.74648 8.89803 9.41924 10.89606 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.005817 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.079310 B = 4812.558671 C = 6492.857178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.022 3.978 4 C 0.060 3.940 5 C -0.132 4.132 6 C 0.119 3.881 7 N -0.588 5.588 8 C 0.231 3.769 9 C -0.539 4.539 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.886 5.886 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.543 3.457 18 O -0.567 6.567 19 C -0.106 4.106 20 H 0.147 0.853 21 C -0.125 4.125 22 H 0.128 0.872 23 C -0.086 4.086 24 C -0.206 4.206 25 C 0.395 3.605 26 O -0.431 6.431 27 C -0.211 4.211 28 H 0.131 0.869 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.265 0.735 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 12.282 1.248 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.126 4.126 4 C -0.068 4.068 5 C -0.171 4.171 6 C -0.005 4.005 7 N -0.317 5.317 8 C 0.112 3.888 9 C -0.578 4.578 10 H 0.079 0.921 11 C -0.138 4.138 12 N -0.524 5.524 13 Si 0.722 3.278 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.332 3.668 18 O -0.449 6.449 19 C -0.126 4.126 20 H 0.165 0.835 21 C -0.144 4.144 22 H 0.146 0.854 23 C -0.123 4.123 24 C -0.243 4.243 25 C 0.269 3.731 26 O -0.302 6.302 27 C -0.231 4.231 28 H 0.149 0.851 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.870 12.184 0.327 12.788 hybrid contribution 0.023 -0.845 1.294 1.546 sum -3.848 11.338 1.622 12.083 Atomic orbital electron populations 1.22367 0.87606 1.02202 1.00127 1.61960 1.07518 1.13942 1.43699 1.22424 1.01420 0.88720 1.00025 1.22062 0.95833 0.98098 0.90836 1.21986 0.93959 1.00966 1.00140 1.21269 0.81195 1.00455 0.97564 1.48285 1.05165 1.24150 1.54087 1.19593 0.95898 0.81226 0.92113 1.21483 1.44683 0.96841 0.94783 0.92057 1.24945 0.95106 0.98500 0.95218 1.69957 1.43730 1.25105 1.13608 0.86490 0.77949 0.82037 0.81282 1.19693 1.20863 1.20842 1.19406 0.87226 0.82074 0.78132 1.90613 1.78998 1.30993 1.44325 1.22719 0.93064 1.00436 0.96416 0.83506 1.23867 1.00374 0.89271 1.00870 0.85414 1.21961 0.95734 0.95791 0.98815 1.23705 1.01191 0.98435 1.00997 1.24375 0.77863 0.83829 0.87083 1.90401 1.56594 1.64145 1.19053 1.23754 1.04608 1.03462 0.91253 0.85121 0.95906 0.91605 0.91341 0.90959 0.91722 0.95764 0.90549 0.94776 0.91970 0.90747 0.90108 0.90935 0.94674 0.93434 0.92541 0.89561 0.90284 0.89620 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.07 0.57 0.84 16 2 N -0.55 -7.14 5.02 -251.26 -1.26 -8.40 16 3 C 0.02 0.26 9.32 60.07 0.56 0.82 16 4 C 0.06 0.81 4.96 -3.82 -0.02 0.79 16 5 C -0.13 -2.10 5.46 -26.73 -0.15 -2.25 16 6 C 0.12 2.11 5.41 -4.04 -0.02 2.09 16 7 N -0.59 -11.89 2.46 -175.05 -0.43 -12.32 16 8 C 0.23 5.48 4.97 -5.19 -0.03 5.45 16 9 C -0.54 -13.81 9.39 -34.44 -0.32 -14.13 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.65 13.29 55.43 0.74 -23.92 16 13 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.54 10.53 4.27 -10.98 -0.05 10.48 16 18 O -0.57 -11.40 14.65 5.56 0.08 -11.32 16 19 C -0.11 -1.84 5.13 -89.64 -0.46 -2.30 16 20 H 0.15 2.51 8.14 -51.93 -0.42 2.09 16 21 C -0.13 -1.73 7.18 -87.25 -0.63 -2.36 16 22 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 23 C -0.09 -1.12 6.25 -24.56 -0.15 -1.27 16 24 C -0.21 -3.20 6.13 -25.57 -0.16 -3.36 16 25 C 0.39 7.18 7.04 -27.59 -0.19 6.98 16 26 O -0.43 -9.16 17.99 6.00 0.11 -9.05 16 27 C -0.21 -3.57 5.11 -90.76 -0.46 -4.03 16 28 H 0.13 2.19 8.14 -51.93 -0.42 1.76 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 33 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 34 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.99 8.06 -51.93 -0.42 0.58 16 36 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 37 H 0.06 1.02 5.30 -51.93 -0.28 0.74 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 40 H 0.07 1.27 7.42 -51.93 -0.39 0.88 16 41 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 42 H 0.05 1.18 4.95 -51.93 -0.26 0.92 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 44 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.13 2.20 3.16 -51.93 -0.16 2.03 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -29.88 373.18 -9.47 -39.35 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.71 Total: 5.32 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.60 Total: -0.61 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.95 Total: -44.64 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.19 Total: -20.37 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.88 -9.47 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906414570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.322 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds