Wall clock time and date at job start Fri Apr 10 2020 17:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99924 * 2 1 4 4 O 1.21537 * 119.99915 * 175.95590 * 3 2 1 5 5 C 1.48007 * 120.00293 * 355.95098 * 3 2 1 6 6 N 1.34186 * 126.69487 * 5.70936 * 5 3 2 7 7 N 1.28986 * 107.25240 * 179.88941 * 6 5 3 8 8 N 1.28720 * 108.98356 * 0.38178 * 7 6 5 9 9 C 1.46502 * 125.31942 * 179.72332 * 8 7 6 10 10 N 1.28868 * 109.36204 * 359.75463 * 8 7 6 11 11 C 1.46494 * 119.99750 * 180.27072 * 2 1 3 12 12 H 1.09007 * 109.20652 * 179.72725 * 11 2 1 13 13 C 1.50126 * 109.21395 * 299.08995 * 11 2 1 14 14 C 1.52527 * 105.41675 * 218.02696 * 13 11 2 15 15 C 1.46235 * 114.27862 * 270.59263 * 14 13 11 16 16 N 1.50168 * 107.53374 * 58.40433 * 15 14 13 17 17 C 1.36936 * 120.53491 * 109.56890 * 16 15 14 18 18 H 1.07992 * 120.00275 * 151.41279 * 17 16 15 19 19 C 1.38819 * 119.99826 * 331.40989 * 17 16 15 20 20 N 1.31620 * 120.00138 * 350.31965 * 19 17 16 21 21 Si 1.86801 * 119.99953 * 170.32473 * 19 17 16 22 22 H 1.48502 * 109.47269 * 59.99532 * 21 19 17 23 23 H 1.48490 * 109.47466 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46823 * 300.00111 * 21 19 17 25 25 C 1.43428 * 118.92421 * 289.59077 * 16 15 14 26 26 C 1.54845 * 109.20999 * 60.36939 * 11 2 1 27 27 H 1.09000 * 109.47410 * 275.37087 * 1 2 3 28 28 H 1.09001 * 109.46772 * 35.37271 * 1 2 3 29 29 H 1.09000 * 109.47035 * 155.36449 * 1 2 3 30 30 H 1.08994 * 109.47346 * 270.03779 * 9 8 7 31 31 H 1.09004 * 109.46943 * 30.03702 * 9 8 7 32 32 H 1.09005 * 109.47357 * 150.03433 * 9 8 7 33 33 H 1.09004 * 110.24500 * 336.99424 * 13 11 2 34 34 H 1.08991 * 110.25278 * 98.90892 * 13 11 2 35 35 H 1.08996 * 108.52210 * 31.83951 * 14 13 11 36 36 H 1.09001 * 108.51873 * 149.35005 * 14 13 11 37 37 H 1.08994 * 109.84782 * 177.91918 * 15 14 13 38 38 H 1.09002 * 109.84224 * 298.83535 * 15 14 13 39 39 H 0.97003 * 119.99753 * 180.02562 * 20 19 17 40 40 H 1.08998 * 108.15728 * 213.28191 * 25 16 15 41 41 H 1.08991 * 108.16371 * 330.06278 * 25 16 15 42 42 H 1.08996 * 109.35822 * 320.99257 * 26 11 2 43 43 H 1.09003 * 109.36281 * 80.57808 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3520 1.1685 0.0742 5 6 1.4017 2.4474 -0.0905 6 7 0.0697 2.6088 -0.0706 7 7 -0.1640 3.8734 -0.1701 8 7 0.9566 4.5005 -0.2586 9 6 1.1068 5.9517 -0.3918 10 7 1.9257 3.6524 -0.2123 11 6 2.1974 -1.2687 -0.0060 12 1 3.2682 -1.0646 -0.0099 13 6 1.8476 -2.0470 1.2292 14 6 3.1459 -2.7166 1.6679 15 6 3.3711 -4.0358 1.0785 16 7 3.3762 -3.8696 -0.4140 17 6 4.5389 -4.0034 -1.1249 18 1 4.5091 -4.3409 -2.1503 19 6 5.7560 -3.7052 -0.5274 20 7 5.7847 -3.1162 0.6492 21 14 7.3530 -4.1399 -1.3935 22 1 7.4138 -3.4386 -2.7011 23 1 8.5024 -3.7204 -0.5523 24 1 7.4122 -5.6071 -1.6155 25 6 2.1437 -3.5681 -1.0826 26 6 1.8261 -2.0654 -1.2808 27 1 -0.3634 0.0962 1.0231 28 1 -0.3633 0.8380 -0.5949 29 1 -0.3633 -0.9341 -0.4284 30 1 1.1135 6.2209 -1.4480 31 1 0.2745 6.4503 0.1049 32 1 2.0443 6.2638 0.0686 33 1 1.4873 -1.3756 2.0086 34 1 1.0918 -2.7982 1.0003 35 1 3.9789 -2.0686 1.3952 36 1 3.1328 -2.8197 2.7529 37 1 4.3314 -4.4303 1.4103 38 1 2.5707 -4.7143 1.3735 39 1 6.6352 -2.9075 1.0665 40 1 2.1642 -4.0434 -2.0633 41 1 1.3292 -4.0110 -0.5097 42 1 0.7623 -1.9444 -1.4853 43 1 2.3999 -1.6838 -2.1254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948694859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:55 Heat of formation + Delta-G solvation = 150.466906 kcal Electronic energy + Delta-G solvation = -26629.828848 eV Core-core repulsion = 22943.675021 eV Total energy + Delta-G solvation = -3686.153827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.53917 -39.80770 -37.63266 -35.61744 -35.10853 -33.29622 -32.57773 -31.52023 -30.31366 -28.94241 -26.84754 -26.22884 -25.15749 -23.92982 -23.32889 -22.64428 -20.41966 -19.81174 -18.55749 -17.87845 -17.77869 -16.72695 -16.61224 -15.93628 -15.34261 -14.75804 -14.54549 -14.22650 -13.95031 -13.80878 -13.67142 -13.42188 -13.08280 -12.84892 -12.54630 -12.37940 -12.11997 -12.02211 -11.78924 -11.38435 -11.25267 -11.11395 -10.89308 -10.76044 -10.50797 -10.42157 -10.32907 -10.06201 -10.00330 -9.82140 -9.65912 -9.37884 -9.27018 -8.37624 -8.23525 -6.56662 -5.69214 -3.18095 0.87369 1.40654 1.58657 2.90195 3.25769 3.45137 3.50801 3.51065 3.91542 3.96318 4.45690 4.57085 4.63361 4.75962 5.05416 5.33996 5.38270 5.48332 5.49556 5.59927 5.75271 5.78716 5.87566 5.97440 6.07306 6.14770 6.31760 6.33013 6.51655 6.55138 6.78719 6.88252 6.89701 7.01840 7.07416 7.13953 7.35895 7.61253 7.72779 7.83061 7.98925 8.11342 8.30734 8.55009 9.28833 9.92930 10.47653 11.36960 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.003874 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.081387 B = 7226.105499 C = 7945.474987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.587 5.587 3 C 0.602 3.398 4 O -0.500 6.500 5 C 0.142 3.858 6 N -0.253 5.253 7 N -0.065 5.065 8 N -0.138 5.138 9 C 0.093 3.907 10 N -0.250 5.250 11 C 0.151 3.849 12 H 0.119 0.881 13 C -0.119 4.119 14 C -0.131 4.131 15 C 0.167 3.833 16 N -0.589 5.589 17 C -0.254 4.254 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.900 5.900 21 Si 0.904 3.096 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.164 3.836 26 C -0.152 4.152 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.003 0.997 39 H 0.254 0.746 40 H 0.035 0.965 41 H 0.029 0.971 42 H 0.051 0.949 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 14.263 -0.116 19.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.320 5.320 3 C 0.382 3.618 4 O -0.371 6.371 5 C -0.142 4.142 6 N -0.128 5.128 7 N -0.059 5.059 8 N -0.051 5.051 9 C -0.047 4.047 10 N -0.104 5.104 11 C 0.051 3.949 12 H 0.136 0.864 13 C -0.157 4.157 14 C -0.169 4.169 15 C 0.044 3.956 16 N -0.310 5.310 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.544 5.544 21 Si 0.734 3.266 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.212 1.212 25 C 0.034 3.966 26 C -0.194 4.194 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.046 0.954 37 H 0.110 0.890 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.945 14.702 0.009 19.589 hybrid contribution 1.077 -0.004 -0.453 1.169 sum -11.868 14.699 -0.445 18.897 Atomic orbital electron populations 1.22160 0.79215 1.03807 1.02516 1.48106 1.07574 1.05580 1.70724 1.16287 0.85904 0.80565 0.78999 1.90910 1.12101 1.85495 1.48553 1.25605 0.88805 0.94718 1.05040 1.76258 1.13533 1.05935 1.17075 1.78907 1.11096 1.00342 1.15540 1.50228 1.01140 1.10986 1.42697 1.22519 1.06810 0.69362 1.05978 1.75136 1.17497 0.99284 1.18499 1.21628 0.98532 0.79338 0.95423 0.86366 1.21406 0.99599 0.98655 0.96088 1.20971 0.96919 1.01524 0.97531 1.20154 0.99617 0.93326 0.82524 1.44185 1.04058 1.79830 1.02930 1.19130 0.84130 1.38242 0.96851 0.91792 1.25077 0.98118 0.98427 0.97470 1.69862 1.24631 1.43517 1.16426 0.86359 0.83363 0.77993 0.78894 1.21052 1.21680 1.21198 1.20334 0.89376 0.90721 0.96154 1.23340 0.98997 1.00473 0.96638 0.92528 0.89148 0.90631 0.87735 0.86698 0.86808 0.92941 0.92072 0.87606 0.95354 0.89016 0.97861 0.93572 0.94707 0.95229 0.93047 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 8.93 59.85 0.53 1.44 16 2 N -0.59 -10.30 2.62 -175.51 -0.46 -10.76 16 3 C 0.60 11.60 7.69 -12.26 -0.09 11.51 16 4 O -0.50 -11.67 16.43 5.33 0.09 -11.58 16 5 C 0.14 2.35 7.82 -156.25 -1.22 1.13 16 6 N -0.25 -3.67 9.06 32.10 0.29 -3.37 16 7 N -0.07 -0.82 13.23 60.35 0.80 -0.02 16 8 N -0.14 -1.52 4.39 -16.65 -0.07 -1.59 16 9 C 0.09 0.39 11.62 59.85 0.70 1.09 16 10 N -0.25 -3.78 12.17 32.11 0.39 -3.39 16 11 C 0.15 3.01 2.28 -68.39 -0.16 2.86 16 12 H 0.12 2.98 5.57 -51.93 -0.29 2.69 16 13 C -0.12 -2.24 4.93 -28.40 -0.14 -2.38 16 14 C -0.13 -2.88 4.99 -30.19 -0.15 -3.03 16 15 C 0.17 3.91 5.23 -5.20 -0.03 3.88 16 16 N -0.59 -14.39 2.59 -175.12 -0.45 -14.85 16 17 C -0.25 -6.88 9.63 -15.06 -0.14 -7.02 16 18 H 0.06 1.72 7.84 -52.49 -0.41 1.31 16 19 C 0.01 0.21 5.11 -17.43 -0.09 0.12 16 20 N -0.90 -25.34 9.06 55.49 0.50 -24.84 16 21 Si 0.90 22.00 29.56 -169.99 -5.03 16.97 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C 0.16 3.38 5.18 -4.68 -0.02 3.36 16 26 C -0.15 -2.90 5.93 -24.78 -0.15 -3.04 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.20 5.23 -51.93 -0.27 0.93 16 29 H 0.08 0.93 6.33 -51.93 -0.33 0.60 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 34 H 0.06 1.07 6.29 -51.93 -0.33 0.75 16 35 H 0.11 2.76 5.15 -51.93 -0.27 2.50 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 2.40 6.13 -51.93 -0.32 2.08 16 38 H 0.00 0.07 8.13 -51.93 -0.42 -0.35 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.71 8.00 -51.93 -0.42 0.30 16 41 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 42 H 0.05 0.82 6.20 -51.93 -0.32 0.50 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -33.14 336.61 -5.65 -38.79 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.81 Total: -0.33 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.96 Total: 9.90 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 1.00 Total: -58.82 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.14 -5.65 -38.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948694859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.258 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds