Wall clock time and date at job start Fri Apr 10 2020 17:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 119.99924 * 2 1 4 4 O 1.21537 * 119.99915 * 175.95590 * 3 2 1 5 5 C 1.48007 * 120.00293 * 355.95098 * 3 2 1 6 6 N 1.34186 * 126.69487 * 5.70936 * 5 3 2 7 7 N 1.28986 * 107.25240 * 179.88941 * 6 5 3 8 8 N 1.28720 * 108.98356 * 0.38178 * 7 6 5 9 9 C 1.46502 * 125.31942 * 179.72332 * 8 7 6 10 10 N 1.28868 * 109.36204 * 359.75463 * 8 7 6 11 11 C 1.46494 * 119.99750 * 180.27072 * 2 1 3 12 12 H 1.09007 * 109.20652 * 179.72725 * 11 2 1 13 13 C 1.50126 * 109.21395 * 299.08995 * 11 2 1 14 14 C 1.52527 * 105.41675 * 218.02696 * 13 11 2 15 15 C 1.46235 * 114.27862 * 270.59263 * 14 13 11 16 16 N 1.50168 * 107.53374 * 58.40433 * 15 14 13 17 17 C 1.36936 * 120.53491 * 109.56890 * 16 15 14 18 18 H 1.07992 * 120.00275 * 151.41279 * 17 16 15 19 19 C 1.38819 * 119.99826 * 331.40989 * 17 16 15 20 20 N 1.31620 * 120.00138 * 350.31965 * 19 17 16 21 21 Si 1.86801 * 119.99953 * 170.32473 * 19 17 16 22 22 H 1.48502 * 109.47269 * 59.99532 * 21 19 17 23 23 H 1.48490 * 109.47466 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46823 * 300.00111 * 21 19 17 25 25 C 1.43428 * 118.92421 * 289.59077 * 16 15 14 26 26 C 1.54845 * 109.20999 * 60.36939 * 11 2 1 27 27 H 1.09000 * 109.47410 * 275.37087 * 1 2 3 28 28 H 1.09001 * 109.46772 * 35.37271 * 1 2 3 29 29 H 1.09000 * 109.47035 * 155.36449 * 1 2 3 30 30 H 1.08994 * 109.47346 * 270.03779 * 9 8 7 31 31 H 1.09004 * 109.46943 * 30.03702 * 9 8 7 32 32 H 1.09005 * 109.47357 * 150.03433 * 9 8 7 33 33 H 1.09004 * 110.24500 * 336.99424 * 13 11 2 34 34 H 1.08991 * 110.25278 * 98.90892 * 13 11 2 35 35 H 1.08996 * 108.52210 * 31.83951 * 14 13 11 36 36 H 1.09001 * 108.51873 * 149.35005 * 14 13 11 37 37 H 1.08994 * 109.84782 * 177.91918 * 15 14 13 38 38 H 1.09002 * 109.84224 * 298.83535 * 15 14 13 39 39 H 0.97003 * 119.99753 * 180.02562 * 20 19 17 40 40 H 1.08998 * 108.15728 * 213.28191 * 25 16 15 41 41 H 1.08991 * 108.16371 * 330.06278 * 25 16 15 42 42 H 1.08996 * 109.35822 * 320.99257 * 26 11 2 43 43 H 1.09003 * 109.36281 * 80.57808 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3520 1.1685 0.0742 5 6 1.4017 2.4474 -0.0905 6 7 0.0697 2.6088 -0.0706 7 7 -0.1640 3.8734 -0.1701 8 7 0.9566 4.5005 -0.2586 9 6 1.1068 5.9517 -0.3918 10 7 1.9257 3.6524 -0.2123 11 6 2.1974 -1.2687 -0.0060 12 1 3.2682 -1.0646 -0.0099 13 6 1.8476 -2.0470 1.2292 14 6 3.1459 -2.7166 1.6679 15 6 3.3711 -4.0358 1.0785 16 7 3.3762 -3.8696 -0.4140 17 6 4.5389 -4.0034 -1.1249 18 1 4.5091 -4.3409 -2.1503 19 6 5.7560 -3.7052 -0.5274 20 7 5.7847 -3.1162 0.6492 21 14 7.3530 -4.1399 -1.3935 22 1 7.4138 -3.4386 -2.7011 23 1 8.5024 -3.7204 -0.5523 24 1 7.4122 -5.6071 -1.6155 25 6 2.1437 -3.5681 -1.0826 26 6 1.8261 -2.0654 -1.2808 27 1 -0.3634 0.0962 1.0231 28 1 -0.3633 0.8380 -0.5949 29 1 -0.3633 -0.9341 -0.4284 30 1 1.1135 6.2209 -1.4480 31 1 0.2745 6.4503 0.1049 32 1 2.0443 6.2638 0.0686 33 1 1.4873 -1.3756 2.0086 34 1 1.0918 -2.7982 1.0003 35 1 3.9789 -2.0686 1.3952 36 1 3.1328 -2.8197 2.7529 37 1 4.3314 -4.4303 1.4103 38 1 2.5707 -4.7143 1.3735 39 1 6.6352 -2.9075 1.0665 40 1 2.1642 -4.0434 -2.0633 41 1 1.3292 -4.0110 -0.5097 42 1 0.7623 -1.9444 -1.4853 43 1 2.3999 -1.6838 -2.1254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948694859.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:54 Heat of formation + Delta-G solvation = 127.549209 kcal Electronic energy + Delta-G solvation = -26630.822634 eV Core-core repulsion = 22943.675021 eV Total energy + Delta-G solvation = -3687.147613 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.57690 -41.30198 -39.31220 -36.99947 -36.27175 -34.49382 -34.23691 -33.28636 -32.03103 -29.76401 -28.21785 -27.81942 -26.53590 -25.61968 -24.62970 -23.92710 -21.79050 -21.62519 -20.11291 -19.02440 -18.75932 -18.53066 -17.73559 -17.51604 -17.00699 -16.42685 -16.07325 -15.60100 -15.42803 -15.16501 -14.89674 -14.42124 -14.26132 -14.11789 -13.96821 -13.74185 -13.68644 -13.42120 -13.10632 -13.07503 -12.90673 -12.67891 -12.33552 -12.27237 -12.07292 -11.97214 -11.91386 -11.67183 -11.58426 -11.45221 -11.24545 -11.18310 -11.04185 -10.38795 -9.69232 -8.52382 -7.77004 -5.26669 -0.19292 0.23947 0.79794 1.48089 1.48992 1.55259 1.65747 1.86413 2.55759 2.70806 3.01059 3.37387 3.65482 3.78852 4.00236 4.04405 4.17661 4.22211 4.28322 4.38046 4.45169 4.56625 4.58368 4.67623 4.72216 4.76854 4.90376 4.95576 4.96825 5.08181 5.13957 5.22020 5.30787 5.32988 5.46780 5.52413 5.66058 5.70222 5.85069 6.18852 6.26739 6.50494 6.78460 7.02375 7.24852 7.96370 8.46615 9.25635 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.003874 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.081387 B = 7226.105499 C = 7945.474987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.582 5.582 3 C 0.597 3.403 4 O -0.558 6.558 5 C 0.124 3.876 6 N -0.254 5.254 7 N -0.060 5.060 8 N -0.115 5.115 9 C 0.072 3.928 10 N -0.270 5.270 11 C 0.160 3.840 12 H 0.059 0.941 13 C -0.104 4.104 14 C -0.123 4.123 15 C 0.171 3.829 16 N -0.604 5.604 17 C -0.262 4.262 18 H 0.062 0.938 19 C -0.042 4.042 20 N -0.917 5.917 21 Si 0.958 3.042 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.276 1.276 25 C 0.157 3.843 26 C -0.141 4.141 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.147 0.853 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.031 0.969 39 H 0.244 0.756 40 H 0.035 0.965 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 15.226 -0.502 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.313 5.313 3 C 0.379 3.621 4 O -0.433 6.433 5 C -0.159 4.159 6 N -0.129 5.129 7 N -0.053 5.053 8 N -0.030 5.030 9 C -0.064 4.064 10 N -0.125 5.125 11 C 0.058 3.942 12 H 0.077 0.923 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.047 3.953 16 N -0.326 5.326 17 C -0.393 4.393 18 H 0.079 0.921 19 C -0.238 4.238 20 N -0.563 5.563 21 Si 0.787 3.213 22 H -0.211 1.211 23 H -0.224 1.224 24 H -0.202 1.202 25 C 0.028 3.972 26 C -0.183 4.183 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.112 0.888 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -16.098 15.668 -0.392 22.467 hybrid contribution 1.952 -0.144 -0.358 1.989 sum -14.146 15.525 -0.750 21.016 Atomic orbital electron populations 1.22417 0.76219 1.05234 1.03872 1.48113 1.09176 1.04367 1.69628 1.16641 0.85456 0.81890 0.78088 1.90875 1.14625 1.86529 1.51285 1.24956 0.89477 0.94028 1.07433 1.76203 1.12289 1.07006 1.17352 1.78825 1.11344 0.99732 1.15400 1.50790 0.99883 1.12473 1.39851 1.23268 1.09037 0.65746 1.08344 1.75091 1.18931 0.99522 1.19002 1.21213 0.95751 0.80611 0.96583 0.92319 1.21284 0.98278 0.98920 0.95688 1.20782 0.97251 1.00185 0.97967 1.20054 0.98680 0.94254 0.82264 1.44346 1.04507 1.80382 1.03325 1.19368 0.85467 1.37513 0.96920 0.92059 1.25720 1.00709 0.99093 0.98303 1.70078 1.24208 1.44548 1.17447 0.85496 0.80146 0.78005 0.77623 1.21140 1.22380 1.20220 1.20501 0.88538 0.91738 0.96375 1.23217 1.01065 0.98878 0.95101 0.91022 0.88545 0.88484 0.85187 0.83498 0.85433 0.91617 0.89410 0.92135 0.94490 0.92537 0.95119 0.94641 0.94635 0.92254 0.88835 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.55 8.93 127.77 1.14 2.69 16 2 N -0.58 -20.04 2.62 -827.48 -2.17 -22.21 16 3 C 0.60 23.57 7.69 86.84 0.67 24.23 16 4 O -0.56 -27.70 16.43 -3.83 -0.06 -27.76 16 5 C 0.12 4.05 7.82 137.15 1.07 5.12 16 6 N -0.25 -6.91 9.06 -52.37 -0.47 -7.38 16 7 N -0.06 -1.35 13.23 37.02 0.49 -0.86 16 8 N -0.11 -2.28 4.39 -206.58 -0.91 -3.19 16 9 C 0.07 0.38 11.62 127.77 1.49 1.86 16 10 N -0.27 -7.97 12.17 -52.32 -0.64 -8.60 16 11 C 0.16 6.37 2.28 44.70 0.10 6.48 16 12 H 0.06 3.12 5.57 -2.38 -0.01 3.11 16 13 C -0.10 -3.74 4.93 29.51 0.15 -3.59 16 14 C -0.12 -5.47 4.99 28.35 0.14 -5.32 16 15 C 0.17 8.00 5.23 83.58 0.44 8.44 16 16 N -0.60 -29.58 2.59 -707.95 -1.83 -31.41 16 17 C -0.26 -14.50 9.63 84.04 0.81 -13.69 16 18 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 19 C -0.04 -2.39 5.11 84.86 0.43 -1.96 16 20 N -0.92 -54.22 9.06 21.65 0.20 -54.02 16 21 Si 0.96 46.59 29.56 68.60 2.03 48.62 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 C 0.16 6.21 5.18 87.58 0.45 6.66 16 26 C -0.14 -5.16 5.93 31.86 0.19 -4.98 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 2.30 5.23 -2.39 -0.01 2.29 16 29 H 0.10 1.94 6.33 -2.39 -0.02 1.92 16 30 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.15 -0.11 8.14 -2.38 -0.02 -0.13 16 32 H 0.13 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.07 2.20 7.93 -2.38 -0.02 2.18 16 34 H 0.09 2.73 6.29 -2.39 -0.02 2.71 16 35 H 0.06 3.33 5.15 -2.39 -0.01 3.31 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 3.05 6.13 -2.39 -0.01 3.03 16 38 H 0.03 1.26 8.13 -2.39 -0.02 1.25 16 39 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.04 1.40 8.00 -2.39 -0.02 1.38 16 41 H 0.06 2.00 6.88 -2.39 -0.02 1.99 16 42 H 0.09 2.63 6.20 -2.39 -0.01 2.61 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.49 336.61 4.75 -72.74 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.04 Total: 8.13 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.08 Total: 25.96 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -5.34 Total: -127.68 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -77.49 4.75 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948694859.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.288 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds