Wall clock time and date at job start Fri Apr 10 2020 17:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 115.55888 * 2 1 4 4 C 1.52996 * 117.49986 * 214.31303 * 2 1 3 5 5 C 1.52996 * 117.49780 * 145.68566 * 2 1 3 6 6 H 1.09000 * 117.51929 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.49985 * 214.97771 * 5 2 1 8 8 O 1.21283 * 119.99772 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99933 * 179.97438 * 7 5 2 10 10 C 1.46921 * 120.64022 * 180.02562 * 9 7 5 11 11 C 1.53198 * 108.78286 * 233.64849 * 10 9 7 12 12 C 1.52978 * 109.35263 * 305.44232 * 11 10 9 13 13 C 1.53002 * 109.63268 * 61.19347 * 12 11 10 14 14 C 1.46933 * 120.64236 * 359.97438 * 9 7 5 15 15 C 1.53253 * 109.40128 * 181.10825 * 12 11 10 16 16 N 1.47153 * 108.41410 * 67.84712 * 15 12 11 17 17 C 1.36942 * 120.98812 * 230.49618 * 16 15 12 18 18 H 1.08001 * 119.99583 * 153.33194 * 17 16 15 19 19 C 1.38810 * 120.00117 * 333.34220 * 17 16 15 20 20 N 1.31621 * 119.99978 * 343.53837 * 19 17 16 21 21 Si 1.86801 * 120.00002 * 163.54357 * 19 17 16 22 22 H 1.48503 * 109.46966 * 89.99874 * 21 19 17 23 23 H 1.48501 * 109.46707 * 209.99537 * 21 19 17 24 24 H 1.48492 * 109.47093 * 329.99807 * 21 19 17 25 25 C 1.47148 * 118.02586 * 50.48044 * 16 15 12 26 26 C 1.53302 * 108.36630 * 309.39830 * 25 16 15 27 27 O 1.42896 * 109.57100 * 300.94551 * 12 11 10 28 28 H 1.08997 * 109.47496 * 274.31038 * 1 2 3 29 29 H 1.08998 * 109.46886 * 34.31212 * 1 2 3 30 30 H 1.09008 * 109.47055 * 154.31044 * 1 2 3 31 31 H 1.08999 * 117.50122 * 145.02799 * 4 2 1 32 32 H 1.09003 * 117.52149 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.58337 * 113.85607 * 10 9 7 34 34 H 1.09001 * 109.58664 * 353.43512 * 10 9 7 35 35 H 1.08998 * 109.49080 * 65.40959 * 11 10 9 36 36 H 1.08997 * 109.48584 * 185.48101 * 11 10 9 37 37 H 1.09008 * 109.49050 * 178.82318 * 13 12 11 38 38 H 1.08994 * 109.49317 * 58.74894 * 13 12 11 39 39 H 1.08998 * 109.58537 * 246.11826 * 14 9 7 40 40 H 1.08997 * 109.58688 * 6.55139 * 14 9 7 41 41 H 1.08995 * 109.68158 * 187.58362 * 15 12 11 42 42 H 1.09014 * 109.67232 * 308.11995 * 15 12 11 43 43 H 0.97000 * 120.00122 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.68914 * 69.11415 * 25 16 15 45 45 H 1.08999 * 109.68689 * 189.64133 * 25 16 15 46 46 H 1.09003 * 109.50846 * 172.28358 * 26 25 16 47 47 H 1.08999 * 109.51378 * 292.42945 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7650 5 6 2.2364 -1.1209 0.7651 6 1 1.6115 -1.8588 1.2681 7 6 3.5293 -0.7811 1.4609 8 8 3.9720 0.3465 1.4008 9 7 4.1934 -1.7301 2.1499 10 6 5.4547 -1.4141 2.8340 11 6 6.5278 -2.4055 2.3728 12 6 6.0295 -3.8339 2.6000 13 6 4.7623 -4.0734 1.7766 14 6 3.6696 -3.1004 2.2324 15 6 7.1131 -4.8263 2.1647 16 7 8.2501 -4.7091 3.0915 17 6 9.5271 -4.5478 2.6240 18 1 10.2662 -4.0489 3.2333 19 6 9.8715 -5.0253 1.3669 20 7 9.0979 -5.9009 0.7608 21 14 11.4330 -4.4254 0.5354 22 1 12.5645 -5.3117 0.9088 23 1 11.2500 -4.4504 -0.9381 24 1 11.7256 -3.0374 0.9745 25 6 7.9741 -4.7701 4.5356 26 6 6.8503 -3.7775 4.8549 27 8 5.7420 -4.0258 3.9865 28 1 -0.3634 0.0772 1.0247 29 1 -0.3633 0.8488 -0.5793 30 1 -0.3633 -0.9262 -0.4455 31 1 3.1716 -0.8751 -1.2682 32 1 1.6116 -1.8589 -1.2681 33 1 5.3171 -1.4998 3.9119 34 1 5.7626 -0.3992 2.5824 35 1 6.7301 -2.2552 1.3124 36 1 7.4417 -2.2439 2.9444 37 1 4.4211 -5.0981 1.9239 38 1 4.9782 -3.9097 0.7209 39 1 3.3880 -3.3226 3.2617 40 1 2.7990 -3.1984 1.5839 41 1 6.7162 -5.8409 2.1973 42 1 7.4399 -4.5919 1.1515 43 1 9.3383 -6.2343 -0.1178 44 1 7.6617 -5.7783 4.8075 45 1 8.8716 -4.5010 5.0926 46 1 6.5364 -3.9040 5.8910 47 1 7.2098 -2.7596 4.7043 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949290189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:58:59 Heat of formation + Delta-G solvation = -46.603185 kcal Electronic energy + Delta-G solvation = -27287.866228 eV Core-core repulsion = 23664.414393 eV Total energy + Delta-G solvation = -3623.451835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.71478 -40.51562 -38.04538 -37.23870 -36.17132 -33.74202 -33.19881 -32.34808 -29.94122 -29.48390 -28.33225 -25.94617 -24.94633 -24.73495 -23.60336 -22.41027 -21.63231 -20.48465 -19.74143 -18.80885 -18.52033 -17.26629 -17.15156 -16.57286 -16.24610 -15.99866 -15.84781 -15.47261 -15.37842 -15.19721 -15.13072 -14.60950 -14.27115 -14.12847 -13.87601 -13.63117 -13.44838 -13.24588 -13.17787 -12.87568 -12.78461 -12.72027 -12.41310 -12.34774 -12.26309 -12.20837 -12.12954 -11.73234 -11.69364 -11.30983 -11.10090 -10.88796 -10.76071 -10.70019 -10.44753 -9.66096 -8.69222 -7.90734 -5.36945 1.42043 1.44538 1.45287 1.53091 1.94941 2.45476 2.86459 2.89710 3.22928 3.44241 3.53323 3.78471 3.82526 3.88046 3.93828 3.99843 4.09403 4.17797 4.29488 4.36054 4.44044 4.44324 4.52499 4.56506 4.66562 4.73194 4.78081 4.81131 4.89143 4.91187 4.95390 4.98419 4.99548 5.05856 5.10021 5.13759 5.24110 5.27163 5.33313 5.44952 5.51686 5.56916 5.62237 6.29780 6.42314 6.43260 7.07663 7.13050 7.76897 8.30233 9.14159 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018372 B = 0.003988 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.710725 B = 7018.749054 C = 7656.785380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.125 4.125 3 H 0.090 0.910 4 C -0.140 4.140 5 C -0.195 4.195 6 H 0.153 0.847 7 C 0.535 3.465 8 O -0.594 6.594 9 N -0.602 5.602 10 C 0.127 3.873 11 C -0.133 4.133 12 C 0.106 3.894 13 C -0.114 4.114 14 C 0.120 3.880 15 C 0.168 3.832 16 N -0.611 5.611 17 C -0.260 4.260 18 H 0.068 0.932 19 C -0.047 4.047 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.104 3.896 26 C 0.052 3.948 27 O -0.378 6.378 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.117 0.883 41 H -0.002 1.002 42 H 0.059 0.941 43 H 0.250 0.750 44 H 0.016 0.984 45 H 0.066 0.934 46 H 0.117 0.883 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 6.798 1.548 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 H 0.108 0.892 4 C -0.177 4.177 5 C -0.215 4.215 6 H 0.171 0.829 7 C 0.326 3.674 8 O -0.475 6.475 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.172 4.172 12 C 0.066 3.934 13 C -0.152 4.152 14 C -0.002 4.002 15 C 0.042 3.958 16 N -0.335 5.335 17 C -0.390 4.390 18 H 0.085 0.915 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.197 1.197 25 C -0.021 4.021 26 C -0.025 4.025 27 O -0.297 6.297 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.153 0.847 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.016 0.984 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.135 0.865 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.733 7.238 1.464 19.209 hybrid contribution 2.038 -0.119 -0.578 2.122 sum -15.696 7.119 0.886 17.258 Atomic orbital electron populations 1.21395 0.89903 1.03407 1.02683 1.22409 0.96771 0.93852 1.01357 0.89192 1.23192 1.02762 1.01846 0.89894 1.22389 0.96319 1.06412 0.96428 0.82923 1.20379 0.85709 0.83741 0.77596 1.90636 1.70273 1.22970 1.63638 1.48146 1.23146 1.11218 1.50835 1.21376 0.83151 0.98300 0.96794 1.22133 0.98567 0.95392 1.01112 1.21930 0.95489 0.93584 0.82444 1.21847 0.93645 1.01082 0.98674 1.21864 0.96393 0.78393 1.03505 1.21164 0.86220 0.93851 0.94569 1.44310 1.03086 1.85362 1.00775 1.19459 0.88597 1.29954 1.00992 0.91457 1.25721 1.00893 0.97342 1.00336 1.70162 1.40670 1.31331 1.15685 0.85366 0.79850 0.78410 0.77400 1.21061 1.21892 1.19729 1.21779 0.97855 0.97001 0.85472 1.23048 0.87407 0.97744 0.94343 1.87775 1.35708 1.90266 1.15961 0.91654 0.91135 0.90593 0.90158 0.84746 0.90493 0.90957 0.93244 0.91125 0.89112 0.90864 0.89735 0.86477 0.98421 0.92272 0.94078 0.96557 0.91514 0.86528 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.19 71.98 0.73 -0.64 16 2 C -0.13 -2.30 5.92 -10.80 -0.06 -2.36 16 3 H 0.09 2.13 7.67 -2.39 -0.02 2.11 16 4 C -0.14 -2.42 9.88 30.60 0.30 -2.12 16 5 C -0.19 -3.84 4.69 -11.54 -0.05 -3.89 16 6 H 0.15 2.09 6.81 -2.39 -0.02 2.07 16 7 C 0.54 15.54 7.48 87.66 0.66 16.19 16 8 O -0.59 -22.09 15.67 -3.04 -0.05 -22.14 16 9 N -0.60 -16.84 2.97 -818.77 -2.43 -19.27 16 10 C 0.13 3.99 6.20 86.37 0.54 4.52 16 11 C -0.13 -4.86 4.33 30.65 0.13 -4.73 16 12 C 0.11 3.86 0.68 -10.72 -0.01 3.85 16 13 C -0.11 -3.29 5.10 30.68 0.16 -3.14 16 14 C 0.12 2.71 6.07 86.38 0.52 3.24 16 15 C 0.17 7.95 4.09 86.34 0.35 8.30 16 16 N -0.61 -30.25 2.55 -697.61 -1.78 -32.03 16 17 C -0.26 -14.13 9.65 84.03 0.81 -13.32 16 18 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 19 C -0.05 -2.62 4.95 84.86 0.42 -2.20 16 20 N -0.93 -54.52 11.14 21.65 0.24 -54.28 16 21 Si 0.96 44.86 29.58 68.60 2.03 46.89 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 25 C 0.10 4.23 6.74 86.36 0.58 4.81 16 26 C 0.05 1.70 6.60 72.08 0.48 2.18 16 27 O -0.38 -12.99 9.00 -148.98 -1.34 -14.33 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.65 7.90 -2.38 -0.02 0.63 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.13 1.53 8.05 -2.39 -0.02 1.51 16 33 H 0.08 2.28 7.83 -2.39 -0.02 2.26 16 34 H 0.07 2.47 7.01 -2.39 -0.02 2.46 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.82 6.16 -2.39 -0.01 2.80 16 37 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.08 1.84 7.82 -2.39 -0.02 1.82 16 40 H 0.12 1.84 5.67 -2.39 -0.01 1.83 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.06 3.18 6.15 -2.38 -0.01 3.17 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 46 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 47 H 0.05 1.61 6.29 -2.39 -0.02 1.60 16 Total: -1.00 -69.54 359.59 3.17 -66.36 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.95 Total: 18.10 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.56 Total: 10.70 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.97 Total: -105.58 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.39 Total: -36.47 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.54 3.17 -66.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949290189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.760 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds