Wall clock time and date at job start Fri Apr 10 2020 17:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.55040 * 2 1 4 4 C 1.52997 * 117.50282 * 145.70609 * 2 1 3 5 5 C 1.52994 * 59.99943 * 107.48692 * 4 2 1 6 6 H 1.09008 * 117.51653 * 107.48751 * 5 4 2 7 7 C 1.50698 * 117.50239 * 252.50918 * 5 4 2 8 8 O 1.21284 * 119.99841 * 68.62171 * 7 5 4 9 9 N 1.34770 * 120.00296 * 248.62321 * 7 5 4 10 10 C 1.46934 * 120.64228 * 359.97438 * 9 7 5 11 11 C 1.53200 * 108.77465 * 126.34402 * 10 9 7 12 12 C 1.52983 * 109.35174 * 54.57474 * 11 10 9 13 13 C 1.52997 * 109.63563 * 298.79976 * 12 11 10 14 14 C 1.46926 * 120.64760 * 179.97438 * 9 7 5 15 15 C 1.53264 * 109.38600 * 178.88523 * 12 11 10 16 16 N 1.47154 * 108.39963 * 292.20886 * 15 12 11 17 17 C 1.36935 * 120.99002 * 129.53851 * 16 15 12 18 18 H 1.07994 * 119.99918 * 333.72989 * 17 16 15 19 19 C 1.38812 * 120.00088 * 153.73115 * 17 16 15 20 20 N 1.31621 * 120.00257 * 159.97871 * 19 17 16 21 21 Si 1.86796 * 120.00013 * 339.97967 * 19 17 16 22 22 H 1.48505 * 109.47234 * 91.87986 * 21 19 17 23 23 H 1.48496 * 109.47382 * 211.87798 * 21 19 17 24 24 H 1.48505 * 109.47444 * 331.88076 * 21 19 17 25 25 C 1.47159 * 118.02195 * 309.50824 * 16 15 12 26 26 C 1.53298 * 108.37501 * 50.59275 * 25 16 15 27 27 O 1.42889 * 109.56133 * 59.06513 * 12 11 10 28 28 H 1.09003 * 109.46929 * 205.67634 * 1 2 3 29 29 H 1.09008 * 109.47284 * 325.66885 * 1 2 3 30 30 H 1.08999 * 109.47395 * 85.67050 * 1 2 3 31 31 H 1.09008 * 117.49366 * 359.97438 * 4 2 1 32 32 H 1.08998 * 117.50510 * 214.98184 * 4 2 1 33 33 H 1.09003 * 109.58783 * 6.55579 * 10 9 7 34 34 H 1.09006 * 109.58664 * 246.13011 * 10 9 7 35 35 H 1.08994 * 109.48864 * 294.60837 * 11 10 9 36 36 H 1.09001 * 109.48992 * 174.53593 * 11 10 9 37 37 H 1.09002 * 109.48738 * 181.16533 * 13 12 11 38 38 H 1.08993 * 109.49061 * 301.23122 * 13 12 11 39 39 H 1.08997 * 109.58530 * 113.86392 * 14 9 7 40 40 H 1.09002 * 109.58380 * 353.44927 * 14 9 7 41 41 H 1.09000 * 109.67964 * 51.93319 * 15 12 11 42 42 H 1.09000 * 109.67380 * 172.47763 * 15 12 11 43 43 H 0.96998 * 120.00475 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.68522 * 290.87314 * 25 16 15 45 45 H 1.08994 * 109.71489 * 170.33267 * 25 16 15 46 46 H 1.09000 * 109.50946 * 187.73933 * 26 25 16 47 47 H 1.08992 * 109.51362 * 67.59223 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 0.7646 5 6 2.2364 -1.1207 -0.7653 6 1 3.1713 -0.8747 -1.2689 7 6 1.3720 -2.1401 -1.4614 8 8 0.1638 -2.0529 -1.4017 9 7 1.9415 -3.1488 -2.1503 10 6 3.4037 -3.2679 -2.2324 11 6 3.8103 -4.6730 -1.7772 12 6 3.0474 -5.7130 -2.6000 13 6 1.5437 -5.5461 -2.3726 14 6 1.1123 -4.1508 -2.8339 15 6 3.4743 -7.1191 -2.1644 16 7 4.8753 -7.3242 -2.5651 17 6 5.8053 -7.7798 -1.6693 18 1 5.6706 -7.6007 -0.6129 19 6 6.9214 -8.4720 -2.1191 20 7 7.9889 -8.5672 -1.3550 21 14 6.9082 -9.2683 -3.8087 22 1 7.4531 -8.3157 -4.8092 23 1 7.7461 -10.4941 -3.7848 24 1 5.5149 -9.6282 -4.1756 25 6 5.2470 -7.0257 -3.9574 26 6 4.7354 -5.6228 -4.3040 27 8 3.3440 -5.5372 -3.9867 28 1 -0.3633 -0.9262 0.4453 29 1 -0.3634 0.8487 0.5796 30 1 -0.3634 0.0776 -1.0247 31 1 1.6112 -1.8586 1.2681 32 1 3.1716 -0.8755 1.2680 33 1 3.8678 -2.5250 -1.5836 34 1 3.7260 -3.1096 -3.2616 35 1 3.5700 -4.7970 -0.7214 36 1 4.8819 -4.8073 -1.9249 37 1 1.0036 -6.3013 -2.9436 38 1 1.3211 -5.6634 -1.3121 39 1 1.2487 -4.0641 -3.9118 40 1 0.0639 -3.9907 -2.5821 41 1 3.3849 -7.2110 -1.0820 42 1 2.8411 -7.8617 -2.6499 43 1 8.7689 -9.0505 -1.6694 44 1 4.7912 -7.7578 -4.6241 45 1 6.3313 -7.0577 -4.0634 46 1 4.8781 -5.4359 -5.3683 47 1 5.2868 -4.8812 -3.7262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949290191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:04 Heat of formation + Delta-G solvation = -18.065124 kcal Electronic energy + Delta-G solvation = -27382.731149 eV Core-core repulsion = 23760.516817 eV Total energy + Delta-G solvation = -3622.214332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66388 -39.45881 -37.08676 -35.95401 -34.59718 -32.78189 -31.57750 -30.98258 -29.12931 -28.42376 -26.84465 -24.86982 -23.56702 -23.20608 -22.75764 -21.34789 -20.61850 -19.40613 -18.51953 -17.53371 -16.97784 -15.89995 -15.63996 -15.54559 -15.26925 -14.95026 -14.69709 -14.38065 -14.07408 -13.88741 -13.79867 -13.30087 -13.09254 -12.74082 -12.66769 -12.54248 -12.41102 -12.17760 -12.05755 -11.95477 -11.61872 -11.43742 -11.38789 -11.07020 -10.76635 -10.75133 -10.39637 -10.29948 -10.27932 -10.13877 -9.66009 -9.54973 -9.49104 -9.36542 -8.68457 -8.47027 -7.04618 -6.03455 -3.40362 2.48192 2.97431 3.23788 3.42700 3.45410 3.66370 4.09324 4.36897 4.44398 4.51433 4.68659 4.72287 4.83126 4.96221 5.11225 5.14330 5.19234 5.21191 5.28764 5.42101 5.51498 5.55551 5.59952 5.63699 5.73099 5.74804 5.76160 5.82596 5.88109 5.92481 5.98434 6.01214 6.07019 6.09522 6.18556 6.27747 6.38746 6.42066 6.46613 6.52780 6.59664 6.72702 7.45531 7.66991 7.80780 8.21133 8.22077 8.80726 9.61336 9.98018 11.12190 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.003742 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.670510 B = 7481.615763 C = 7956.442571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 H 0.109 0.891 4 C -0.149 4.149 5 C -0.194 4.194 6 H 0.123 0.877 7 C 0.545 3.455 8 O -0.545 6.545 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.151 4.151 12 C 0.104 3.896 13 C -0.116 4.116 14 C 0.119 3.881 15 C 0.129 3.871 16 N -0.606 5.606 17 C -0.260 4.260 18 H 0.088 0.912 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.090 3.910 26 C 0.045 3.955 27 O -0.377 6.377 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 14.485 -0.751 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.140 4.140 3 H 0.127 0.873 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.333 3.667 8 O -0.423 6.423 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.189 4.189 12 C 0.063 3.937 13 C -0.155 4.155 14 C -0.003 4.003 15 C 0.003 3.997 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.105 0.895 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.036 4.036 26 C -0.033 4.033 27 O -0.297 6.297 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.445 14.460 -0.815 18.459 hybrid contribution 0.773 -0.815 -0.905 1.442 sum -10.672 13.645 -1.720 17.407 Atomic orbital electron populations 1.21348 0.91561 1.01304 1.02473 1.22370 0.96550 0.93497 1.01600 0.87295 1.23071 1.03072 1.01719 0.90788 1.22308 1.02066 1.01139 0.95960 0.85963 1.19635 0.87837 0.81133 0.78072 1.90664 1.14540 1.75021 1.62086 1.48090 1.07459 1.26623 1.51346 1.21770 0.79204 0.98198 1.01921 1.22363 1.02866 0.93335 1.00317 1.21846 0.93689 0.95938 0.82180 1.21857 0.94495 0.97042 1.02107 1.21496 0.95435 0.86588 0.96820 1.21563 0.86256 0.92669 0.99249 1.44351 1.04508 1.76948 1.07236 1.18891 0.99657 1.30009 0.90228 0.89484 1.25244 0.96230 0.98563 0.97474 1.69815 1.03232 1.44024 1.37940 0.86975 0.77624 0.78975 0.84978 1.21620 1.23111 1.19614 1.22006 1.00060 0.94404 0.87089 1.23064 0.82401 0.98223 0.99575 1.87815 1.24603 1.93026 1.24207 0.91767 0.93476 0.91466 0.88242 0.87808 0.89937 0.91139 0.90946 0.88603 0.90076 0.90405 0.90869 0.89402 0.91263 0.95151 0.92671 0.94947 0.90204 0.89836 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 8.43 37.16 0.31 -0.86 16 2 C -0.12 -1.16 6.41 -90.62 -0.58 -1.74 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.15 -1.40 9.88 -26.74 -0.26 -1.66 16 5 C -0.19 -2.04 4.96 -91.78 -0.46 -2.50 16 6 H 0.12 1.10 6.82 -51.92 -0.35 0.75 16 7 C 0.54 7.29 7.46 -10.99 -0.08 7.21 16 8 O -0.54 -8.56 12.52 5.55 0.07 -8.49 16 9 N -0.60 -7.86 2.97 -172.78 -0.51 -8.37 16 10 C 0.11 1.38 6.07 -3.70 -0.02 1.36 16 11 C -0.15 -2.23 4.33 -26.64 -0.12 -2.35 16 12 C 0.10 1.65 0.68 -90.49 -0.06 1.59 16 13 C -0.12 -1.56 5.10 -26.65 -0.14 -1.70 16 14 C 0.12 1.56 6.20 -3.73 -0.02 1.54 16 15 C 0.13 2.45 5.39 -3.55 -0.02 2.43 16 16 N -0.61 -13.72 2.34 -171.84 -0.40 -14.12 16 17 C -0.26 -6.94 10.10 -15.06 -0.15 -7.09 16 18 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 19 C 0.02 0.67 5.26 -17.43 -0.09 0.58 16 20 N -0.91 -26.98 13.97 55.49 0.78 -26.20 16 21 Si 0.88 21.86 24.29 -169.99 -4.13 17.73 16 22 H -0.29 -6.81 6.58 56.52 0.37 -6.43 16 23 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 24 H -0.27 -6.68 6.55 56.52 0.37 -6.31 16 25 C 0.09 1.88 4.38 -3.53 -0.02 1.87 16 26 C 0.05 0.77 6.60 37.31 0.25 1.01 16 27 O -0.38 -6.29 9.00 -35.23 -0.32 -6.61 16 28 H 0.06 0.78 7.01 -51.93 -0.36 0.42 16 29 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.81 7.26 -51.93 -0.38 0.44 16 31 H 0.10 1.02 8.05 -51.92 -0.42 0.60 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.87 5.67 -51.93 -0.29 0.58 16 34 H 0.07 0.89 7.83 -51.93 -0.41 0.48 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.64 6.15 -51.93 -0.32 1.32 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.98 7.83 -51.93 -0.41 0.57 16 40 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 41 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.03 0.70 6.87 -51.93 -0.36 0.34 16 45 H 0.08 1.80 4.60 -51.93 -0.24 1.56 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.05 0.89 6.29 -51.93 -0.33 0.56 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -30.68 347.39 -8.38 -39.06 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -7.64 Total: 2.07 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.46 Total: -0.31 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.14 Total: -48.69 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.25 Total: -15.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.13 Total: 17.73 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.68 -8.38 -39.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949290191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.999 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds