Wall clock time and date at job start Fri Apr 10 2020 17:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 115.55040 * 2 1 4 4 C 1.52997 * 117.50282 * 145.70609 * 2 1 3 5 5 C 1.52994 * 59.99943 * 107.48692 * 4 2 1 6 6 H 1.09008 * 117.51653 * 107.48751 * 5 4 2 7 7 C 1.50698 * 117.50239 * 252.50918 * 5 4 2 8 8 O 1.21284 * 119.99841 * 68.62171 * 7 5 4 9 9 N 1.34770 * 120.00296 * 248.62321 * 7 5 4 10 10 C 1.46934 * 120.64228 * 359.97438 * 9 7 5 11 11 C 1.53200 * 108.77465 * 126.34402 * 10 9 7 12 12 C 1.52983 * 109.35174 * 54.57474 * 11 10 9 13 13 C 1.52997 * 109.63563 * 298.79976 * 12 11 10 14 14 C 1.46926 * 120.64760 * 179.97438 * 9 7 5 15 15 C 1.53264 * 109.38600 * 178.88523 * 12 11 10 16 16 N 1.47154 * 108.39963 * 292.20886 * 15 12 11 17 17 C 1.36935 * 120.99002 * 129.53851 * 16 15 12 18 18 H 1.07994 * 119.99918 * 333.72989 * 17 16 15 19 19 C 1.38812 * 120.00088 * 153.73115 * 17 16 15 20 20 N 1.31621 * 120.00257 * 159.97871 * 19 17 16 21 21 Si 1.86796 * 120.00013 * 339.97967 * 19 17 16 22 22 H 1.48505 * 109.47234 * 91.87986 * 21 19 17 23 23 H 1.48496 * 109.47382 * 211.87798 * 21 19 17 24 24 H 1.48505 * 109.47444 * 331.88076 * 21 19 17 25 25 C 1.47159 * 118.02195 * 309.50824 * 16 15 12 26 26 C 1.53298 * 108.37501 * 50.59275 * 25 16 15 27 27 O 1.42889 * 109.56133 * 59.06513 * 12 11 10 28 28 H 1.09003 * 109.46929 * 205.67634 * 1 2 3 29 29 H 1.09008 * 109.47284 * 325.66885 * 1 2 3 30 30 H 1.08999 * 109.47395 * 85.67050 * 1 2 3 31 31 H 1.09008 * 117.49366 * 359.97438 * 4 2 1 32 32 H 1.08998 * 117.50510 * 214.98184 * 4 2 1 33 33 H 1.09003 * 109.58783 * 6.55579 * 10 9 7 34 34 H 1.09006 * 109.58664 * 246.13011 * 10 9 7 35 35 H 1.08994 * 109.48864 * 294.60837 * 11 10 9 36 36 H 1.09001 * 109.48992 * 174.53593 * 11 10 9 37 37 H 1.09002 * 109.48738 * 181.16533 * 13 12 11 38 38 H 1.08993 * 109.49061 * 301.23122 * 13 12 11 39 39 H 1.08997 * 109.58530 * 113.86392 * 14 9 7 40 40 H 1.09002 * 109.58380 * 353.44927 * 14 9 7 41 41 H 1.09000 * 109.67964 * 51.93319 * 15 12 11 42 42 H 1.09000 * 109.67380 * 172.47763 * 15 12 11 43 43 H 0.96998 * 120.00475 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.68522 * 290.87314 * 25 16 15 45 45 H 1.08994 * 109.71489 * 170.33267 * 25 16 15 46 46 H 1.09000 * 109.50946 * 187.73933 * 26 25 16 47 47 H 1.08992 * 109.51362 * 67.59223 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1212 0.7646 5 6 2.2364 -1.1207 -0.7653 6 1 3.1713 -0.8747 -1.2689 7 6 1.3720 -2.1401 -1.4614 8 8 0.1638 -2.0529 -1.4017 9 7 1.9415 -3.1488 -2.1503 10 6 3.4037 -3.2679 -2.2324 11 6 3.8103 -4.6730 -1.7772 12 6 3.0474 -5.7130 -2.6000 13 6 1.5437 -5.5461 -2.3726 14 6 1.1123 -4.1508 -2.8339 15 6 3.4743 -7.1191 -2.1644 16 7 4.8753 -7.3242 -2.5651 17 6 5.8053 -7.7798 -1.6693 18 1 5.6706 -7.6007 -0.6129 19 6 6.9214 -8.4720 -2.1191 20 7 7.9889 -8.5672 -1.3550 21 14 6.9082 -9.2683 -3.8087 22 1 7.4531 -8.3157 -4.8092 23 1 7.7461 -10.4941 -3.7848 24 1 5.5149 -9.6282 -4.1756 25 6 5.2470 -7.0257 -3.9574 26 6 4.7354 -5.6228 -4.3040 27 8 3.3440 -5.5372 -3.9867 28 1 -0.3633 -0.9262 0.4453 29 1 -0.3634 0.8487 0.5796 30 1 -0.3634 0.0776 -1.0247 31 1 1.6112 -1.8586 1.2681 32 1 3.1716 -0.8755 1.2680 33 1 3.8678 -2.5250 -1.5836 34 1 3.7260 -3.1096 -3.2616 35 1 3.5700 -4.7970 -0.7214 36 1 4.8819 -4.8073 -1.9249 37 1 1.0036 -6.3013 -2.9436 38 1 1.3211 -5.6634 -1.3121 39 1 1.2487 -4.0641 -3.9118 40 1 0.0639 -3.9907 -2.5821 41 1 3.3849 -7.2110 -1.0820 42 1 2.8411 -7.8617 -2.6499 43 1 8.7689 -9.0505 -1.6694 44 1 4.7912 -7.7578 -4.6241 45 1 6.3313 -7.0577 -4.0634 46 1 4.8781 -5.4359 -5.3683 47 1 5.2868 -4.8812 -3.7262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949290191.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:04 Heat of formation + Delta-G solvation = -36.887701 kcal Electronic energy + Delta-G solvation = -27383.547357 eV Core-core repulsion = 23760.516817 eV Total energy + Delta-G solvation = -3623.030540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.78067 -40.66430 -38.12774 -37.09459 -36.22990 -34.06365 -33.53409 -32.13668 -30.39572 -29.44147 -28.44975 -26.03253 -25.00850 -24.49485 -24.03223 -22.44766 -21.71230 -20.69400 -19.61276 -18.91217 -18.48071 -17.44608 -16.90245 -16.68291 -16.44431 -16.10745 -16.01693 -15.73534 -15.70958 -15.47037 -14.85421 -14.50910 -14.30960 -14.01817 -13.89652 -13.78322 -13.59231 -13.52219 -13.35225 -13.09866 -13.05337 -12.75526 -12.48180 -12.35740 -12.22574 -12.18898 -11.98053 -11.75901 -11.54129 -11.23053 -11.16991 -11.01088 -10.82245 -10.50681 -10.43686 -9.63002 -8.91491 -8.18555 -5.51077 1.26241 1.40409 1.47986 1.50840 1.98916 2.38182 2.75842 2.87133 3.03124 3.22630 3.47102 3.68633 3.78370 3.86105 3.91177 3.95713 4.08167 4.13020 4.23970 4.26370 4.34983 4.45909 4.48808 4.50012 4.55805 4.67961 4.73217 4.77460 4.82731 4.84582 4.84937 4.90539 4.92559 4.96571 5.01089 5.04810 5.06867 5.20079 5.24781 5.28175 5.53560 5.59735 5.79030 6.09060 6.31818 6.43984 6.83032 7.19583 7.55598 7.96688 9.00847 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.003742 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.670510 B = 7481.615763 C = 7956.442571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 H 0.135 0.865 4 C -0.142 4.142 5 C -0.204 4.204 6 H 0.143 0.857 7 C 0.538 3.462 8 O -0.573 6.573 9 N -0.604 5.604 10 C 0.120 3.880 11 C -0.144 4.144 12 C 0.110 3.890 13 C -0.109 4.109 14 C 0.123 3.877 15 C 0.124 3.876 16 N -0.617 5.617 17 C -0.243 4.243 18 H 0.057 0.943 19 C -0.031 4.031 20 N -0.954 5.954 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.313 1.313 24 H -0.270 1.270 25 C 0.083 3.917 26 C 0.054 3.946 27 O -0.374 6.374 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.031 0.969 45 H 0.063 0.937 46 H 0.116 0.884 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.428 16.402 -1.944 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 H 0.153 0.847 4 C -0.180 4.180 5 C -0.224 4.224 6 H 0.161 0.839 7 C 0.328 3.672 8 O -0.454 6.454 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.183 4.183 12 C 0.070 3.930 13 C -0.147 4.147 14 C 0.001 3.999 15 C -0.001 4.001 16 N -0.343 5.343 17 C -0.372 4.372 18 H 0.075 0.925 19 C -0.226 4.226 20 N -0.600 5.600 21 Si 0.773 3.227 22 H -0.195 1.195 23 H -0.243 1.243 24 H -0.195 1.195 25 C -0.042 4.042 26 C -0.024 4.024 27 O -0.293 6.293 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.065 16.400 -2.036 20.461 hybrid contribution 0.859 -1.409 -0.450 1.710 sum -11.206 14.991 -2.486 18.881 Atomic orbital electron populations 1.21276 0.92772 1.00988 1.01393 1.22500 0.95692 0.94556 1.01000 0.84718 1.23137 1.03772 1.01146 0.89930 1.22388 1.02556 1.00943 0.96550 0.83916 1.20176 0.87845 0.81436 0.77704 1.90659 1.15954 1.75757 1.63012 1.48155 1.07654 1.26580 1.51201 1.21744 0.78871 0.96961 1.02640 1.22249 1.01225 0.94783 0.99994 1.21787 0.95235 0.93966 0.82046 1.21810 0.92673 0.97741 1.02524 1.21421 0.95369 0.86259 0.96882 1.21736 0.84326 0.94968 0.99069 1.44430 1.05350 1.76965 1.07513 1.18810 0.99991 1.28634 0.89811 0.92517 1.25806 0.96095 0.99702 1.01012 1.69935 1.04070 1.45866 1.40142 0.85999 0.77315 0.77776 0.81606 1.19508 1.24257 1.19462 1.22095 0.99268 0.97029 0.85780 1.23022 0.82365 0.95413 1.01605 1.87836 1.24399 1.92695 1.24415 0.93892 0.91606 0.93265 0.89629 0.85523 0.87651 0.90651 0.91367 0.90841 0.89185 0.90135 0.90694 0.89720 0.91860 0.95097 0.92903 0.95137 0.91851 0.86640 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 8.43 71.98 0.61 -1.55 16 2 C -0.12 -1.97 6.41 -10.80 -0.07 -2.03 16 3 H 0.14 1.55 8.14 -2.39 -0.02 1.54 16 4 C -0.14 -2.32 9.88 30.59 0.30 -2.01 16 5 C -0.20 -3.76 4.96 -11.54 -0.06 -3.81 16 6 H 0.14 2.03 6.82 -2.38 -0.02 2.01 16 7 C 0.54 13.52 7.46 87.66 0.65 14.18 16 8 O -0.57 -17.65 12.52 -3.04 -0.04 -17.69 16 9 N -0.60 -14.50 2.97 -818.94 -2.43 -16.93 16 10 C 0.12 2.66 6.07 86.36 0.52 3.19 16 11 C -0.14 -4.06 4.33 30.66 0.13 -3.92 16 12 C 0.11 3.30 0.68 -10.71 -0.01 3.30 16 13 C -0.11 -2.73 5.10 30.65 0.16 -2.58 16 14 C 0.12 3.00 6.20 86.35 0.54 3.54 16 15 C 0.12 4.65 5.39 86.34 0.47 5.11 16 16 N -0.62 -27.73 2.34 -697.59 -1.63 -29.35 16 17 C -0.24 -13.21 10.10 84.03 0.85 -12.36 16 18 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 19 C -0.03 -1.76 5.26 84.86 0.45 -1.31 16 20 N -0.95 -58.20 13.97 21.65 0.30 -57.90 16 21 Si 0.94 45.45 24.29 68.60 1.67 47.12 16 22 H -0.27 -11.96 6.58 99.48 0.65 -11.30 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 24 H -0.27 -12.76 6.55 99.48 0.65 -12.11 16 25 C 0.08 3.35 4.38 86.35 0.38 3.72 16 26 C 0.05 1.67 6.60 72.08 0.48 2.14 16 27 O -0.37 -11.47 9.00 -148.98 -1.34 -12.81 16 28 H 0.04 1.03 7.01 -2.39 -0.02 1.01 16 29 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.05 1.16 7.26 -2.39 -0.02 1.14 16 31 H 0.09 1.64 8.05 -2.38 -0.02 1.62 16 32 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.11 1.87 5.67 -2.39 -0.01 1.86 16 34 H 0.08 1.65 7.83 -2.38 -0.02 1.63 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.07 2.44 6.15 -2.39 -0.01 2.42 16 37 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.82 7.83 -2.39 -0.02 1.80 16 40 H 0.08 2.16 7.01 -2.39 -0.02 2.14 16 41 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.03 1.25 6.87 -2.39 -0.02 1.23 16 45 H 0.06 2.76 4.60 -2.39 -0.01 2.75 16 46 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.06 1.81 6.29 -2.39 -0.02 1.80 16 Total: -1.00 -67.29 347.39 2.77 -64.52 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.85 Total: 17.46 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.39 Total: 5.58 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -3.76 Total: -104.18 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.38 Total: -30.50 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -67.29 2.77 -64.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949290191.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.633 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds