Wall clock time and date at job start Fri Apr 10 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 120.00065 * 2 1 4 4 O 1.21274 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99735 * 0.02562 * 3 2 1 6 6 N 1.46496 * 109.47124 * 179.97438 * 5 3 2 7 7 N 1.28885 * 125.45009 * 89.99893 * 6 5 3 8 8 C 1.31042 * 107.91816 * 180.02562 * 7 6 5 9 9 N 1.33312 * 106.89888 * 0.02562 * 8 7 6 10 10 N 1.28786 * 125.45058 * 269.69715 * 6 5 3 11 11 C 1.46506 * 119.99936 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47289 * 60.00001 * 11 2 1 13 13 C 1.52996 * 109.47131 * 180.02562 * 12 11 2 14 14 C 1.53000 * 109.47518 * 59.99828 * 13 12 11 15 15 N 1.46496 * 109.47432 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99453 * 275.00060 * 15 14 13 17 17 H 1.07995 * 120.00386 * 359.97438 * 16 15 14 18 18 C 1.38815 * 119.99964 * 180.02562 * 16 15 14 19 19 N 1.31628 * 119.99858 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47030 * 119.99749 * 20 18 16 23 23 H 1.48496 * 109.47318 * 239.99638 * 20 18 16 24 24 C 1.53005 * 109.46632 * 300.00318 * 14 13 12 25 25 C 1.52996 * 109.47571 * 60.00168 * 24 14 13 26 26 H 1.08999 * 109.47256 * 269.99474 * 1 2 3 27 27 H 1.08998 * 109.47416 * 29.99577 * 1 2 3 28 28 H 1.09008 * 109.47058 * 150.00176 * 1 2 3 29 29 H 1.09000 * 109.47333 * 299.99429 * 5 3 2 30 30 H 1.09002 * 109.47152 * 59.99956 * 5 3 2 31 31 H 1.07999 * 126.54872 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47060 * 180.02562 * 11 2 1 33 33 H 1.09001 * 109.46832 * 299.99854 * 12 11 2 34 34 H 1.08996 * 109.46952 * 59.99873 * 12 11 2 35 35 H 1.09001 * 109.46997 * 299.99574 * 13 12 11 36 36 H 1.09004 * 109.47552 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47194 * 59.99866 * 14 13 12 38 38 H 0.96994 * 120.00546 * 94.99704 * 15 14 13 39 39 H 0.97000 * 119.99928 * 179.97438 * 19 18 16 40 40 H 1.09001 * 109.47420 * 299.99415 * 24 14 13 41 41 H 1.09004 * 109.46832 * 179.97438 * 24 14 13 42 42 H 1.08992 * 109.47346 * 180.02562 * 25 24 14 43 43 H 1.09001 * 109.47364 * 59.99212 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3854 2.4722 0.0006 6 7 2.3373 3.5858 0.0011 7 7 2.8231 4.1544 -1.0486 8 6 3.6354 5.1037 -0.6534 9 7 3.6265 5.0913 0.6796 10 7 2.8185 4.1567 1.0504 11 6 2.1975 -1.2688 -0.0006 12 6 1.8279 -2.0705 -1.2501 13 6 2.5924 -3.3958 -1.2504 14 6 2.2223 -4.1984 -0.0015 15 7 2.9548 -5.4671 -0.0014 16 6 2.4560 -6.5456 -0.6821 17 1 1.5226 -6.4610 -1.2186 18 6 3.1498 -7.7480 -0.6817 19 7 4.2872 -7.8512 -0.0274 20 14 2.4692 -9.2194 -1.6096 21 1 1.1860 -8.8459 -2.2571 22 1 3.4428 -9.6436 -2.6476 23 1 2.2373 -10.3385 -0.6615 24 6 2.5919 -3.3965 1.2481 25 6 1.8273 -2.0713 1.2484 26 1 -0.3634 -0.0001 1.0276 27 1 -0.3634 0.8900 -0.5137 28 1 -0.3633 -0.8901 -0.5138 29 1 0.7584 2.5302 -0.8892 30 1 0.7590 2.5298 0.8908 31 1 4.2036 5.7689 -1.2867 32 1 3.2692 -1.0696 0.0000 33 1 0.7562 -2.2697 -1.2502 34 1 2.0912 -1.4986 -2.1398 35 1 3.6641 -3.1970 -1.2501 36 1 2.3288 -3.9673 -2.1404 37 1 1.1506 -4.3972 -0.0017 38 1 3.7930 -5.5432 0.4807 39 1 4.7718 -8.6915 -0.0268 40 1 3.6636 -3.1977 1.2484 41 1 2.3278 -3.9681 2.1379 42 1 2.0910 -1.4999 2.1383 43 1 0.7556 -2.2701 1.2481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963327099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:14 Heat of formation + Delta-G solvation = 108.692610 kcal Electronic energy + Delta-G solvation = -25385.556589 eV Core-core repulsion = 21697.591293 eV Total energy + Delta-G solvation = -3687.965296 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.170 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.59115 -40.60705 -38.27686 -35.75370 -35.28643 -33.58337 -33.29901 -31.13331 -30.51426 -29.66358 -27.86358 -26.92117 -24.23518 -24.09565 -23.27086 -22.36359 -21.44000 -19.84704 -19.41824 -18.40287 -17.93539 -17.08332 -16.74601 -16.40318 -16.20862 -15.51386 -15.14284 -14.30828 -14.23941 -13.98668 -13.87239 -13.81199 -13.62094 -13.10368 -12.95987 -12.77133 -12.63772 -12.26994 -12.13385 -11.89450 -11.52734 -11.41994 -11.24040 -10.96902 -10.92182 -10.84410 -10.79772 -10.73074 -10.25236 -10.16560 -10.11421 -9.79660 -9.63110 -8.96007 -8.87903 -6.98009 -5.78680 -3.07647 0.88712 1.43155 1.99920 2.03290 2.56772 3.40908 3.46078 3.48781 3.70998 3.74792 4.08289 4.20496 4.55529 4.56125 4.62120 4.77810 4.87224 5.07580 5.17758 5.23936 5.40755 5.42482 5.46056 5.47035 5.58220 5.64648 5.73824 5.74825 5.78832 5.94705 6.09948 6.15527 6.19125 6.32761 6.47841 6.53001 6.62373 6.90475 6.92616 7.07547 7.61414 7.67627 8.08534 8.39917 9.50935 10.09349 10.43558 11.44034 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.035940 B = 0.002450 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.896815 B =11427.946252 C =11562.273303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.600 5.600 3 C 0.503 3.497 4 O -0.519 6.519 5 C 0.111 3.889 6 N -0.127 5.127 7 N -0.302 5.302 8 C 0.145 3.855 9 N -0.285 5.285 10 N -0.050 5.050 11 C 0.140 3.860 12 C -0.121 4.121 13 C -0.133 4.133 14 C 0.179 3.821 15 N -0.726 5.726 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.122 4.122 25 C -0.118 4.118 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.237 0.763 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 23.594 -0.432 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.333 5.333 3 C 0.286 3.714 4 O -0.394 6.394 5 C -0.013 4.013 6 N -0.038 5.038 7 N -0.151 5.151 8 C -0.158 4.158 9 N -0.156 5.156 10 N -0.044 5.044 11 C 0.038 3.962 12 C -0.161 4.161 13 C -0.174 4.174 14 C 0.068 3.932 15 N -0.366 5.366 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.161 4.161 25 C -0.157 4.157 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.253 0.747 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.452 23.161 0.022 25.410 hybrid contribution 0.103 -0.709 -0.983 1.217 sum -10.349 22.452 -0.961 24.741 Atomic orbital electron populations 1.21983 0.79205 1.04006 1.02702 1.47932 1.07278 1.05681 1.72368 1.20176 0.88276 0.84994 0.77910 1.90827 1.13306 1.86612 1.48676 1.22093 0.89077 0.81230 1.08924 1.49522 1.29728 1.23434 1.01163 1.74710 1.14236 1.10538 1.15633 1.27358 0.99014 0.97969 0.91428 1.75884 1.14069 1.13739 1.11902 1.79005 1.07185 1.04140 1.14022 1.21379 0.97899 0.80753 0.96163 1.21876 1.00885 0.97168 0.96122 1.22253 0.99676 0.93672 1.01814 1.20218 0.95743 0.86262 0.90932 1.42443 1.26078 1.06563 1.61491 1.19269 1.04120 0.89458 1.24053 0.91174 1.24758 0.97292 0.98018 1.00997 1.69676 1.16127 1.25690 1.46562 0.86142 0.77939 0.83126 0.79122 1.20594 1.21892 1.21892 1.21783 1.00093 0.94335 0.99898 1.21804 1.00901 0.96495 0.96480 0.91576 0.91180 0.89477 0.83732 0.83579 0.74739 0.87997 0.91868 0.92451 0.92419 0.91529 0.93584 0.78265 0.93549 0.91990 0.91329 0.92094 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 9.30 59.85 0.56 0.86 16 2 N -0.60 -5.50 2.76 -173.93 -0.48 -5.98 16 3 C 0.50 5.39 7.74 -10.99 -0.09 5.30 16 4 O -0.52 -8.32 15.76 5.56 0.09 -8.23 16 5 C 0.11 0.75 5.64 -5.20 -0.03 0.72 16 6 N -0.13 -1.36 3.49 -11.72 -0.04 -1.40 16 7 N -0.30 -3.32 12.13 29.34 0.36 -2.96 16 8 C 0.15 1.42 13.26 -91.58 -1.21 0.20 16 9 N -0.28 -3.51 12.50 29.33 0.37 -3.14 16 10 N -0.05 -0.62 13.25 60.35 0.80 0.18 16 11 C 0.14 1.70 2.52 -67.93 -0.17 1.53 16 12 C -0.12 -1.54 5.18 -26.73 -0.14 -1.67 16 13 C -0.13 -2.24 5.50 -26.73 -0.15 -2.39 16 14 C 0.18 3.32 2.77 -67.93 -0.19 3.13 16 15 N -0.73 -17.71 5.12 -53.42 -0.27 -17.99 16 16 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.12 -1.91 5.39 -26.73 -0.14 -2.06 16 25 C -0.12 -1.42 5.20 -26.73 -0.14 -1.56 16 26 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.07 0.12 6.44 -51.93 -0.33 -0.21 16 28 H 0.09 0.44 6.43 -51.92 -0.33 0.11 16 29 H 0.15 0.49 7.40 -51.93 -0.38 0.10 16 30 H 0.15 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.24 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.10 1.54 6.90 -51.93 -0.36 1.18 16 33 H 0.06 0.70 6.66 -51.93 -0.35 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 39 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.69 7.67 -51.93 -0.40 0.30 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -36.43 353.56 -6.34 -42.78 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.24 Total: 4.67 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.95 Total: -3.04 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 1.45 Total: -58.60 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.43 -6.34 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963327099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.469 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds