Wall clock time and date at job start Fri Apr 10 2020 17:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46816 * 2 1 4 4 N 1.46495 * 109.47439 * 119.99916 * 2 1 3 5 5 C 1.34777 * 120.00115 * 275.00503 * 4 2 1 6 6 O 1.21277 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00272 * 179.97438 * 5 4 2 8 8 C 1.54024 * 111.85513 * 298.26954 * 7 5 4 9 9 C 1.57194 * 103.35317 * 214.39792 * 8 7 5 10 10 C 1.54868 * 102.90542 * 37.59750 * 9 8 7 11 11 C 1.54335 * 104.13706 * 321.15521 * 10 9 8 12 12 H 1.08998 * 111.94020 * 147.00983 * 11 10 9 13 13 O 1.43814 * 108.58712 * 270.39676 * 11 10 9 14 14 C 1.44308 * 107.19545 * 140.23514 * 13 11 10 15 15 C 1.54620 * 111.90368 * 61.01095 * 7 5 4 16 16 C 1.53000 * 109.47081 * 240.00296 * 2 1 3 17 17 C 1.53495 * 114.20970 * 59.99991 * 16 2 1 18 18 N 1.47068 * 87.98832 * 87.51855 * 17 16 2 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 H 1.09001 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47554 * 300.00006 * 1 2 3 30 30 H 1.09001 * 109.47328 * 60.00053 * 1 2 3 31 31 H 0.96999 * 120.00224 * 94.99884 * 4 2 1 32 32 H 1.09006 * 110.43555 * 333.80687 * 8 7 5 33 33 H 1.08995 * 110.44312 * 96.31432 * 8 7 5 34 34 H 1.09001 * 110.78650 * 279.17864 * 9 8 7 35 35 H 1.08994 * 110.56924 * 155.91676 * 9 8 7 36 36 H 1.08999 * 110.49902 * 202.49310 * 10 9 8 37 37 H 1.09000 * 110.61063 * 79.87725 * 10 9 8 38 38 H 1.08997 * 110.61450 * 201.50185 * 14 13 11 39 39 H 1.08996 * 110.75123 * 78.57342 * 14 13 11 40 40 H 1.09002 * 110.91090 * 217.89423 * 15 7 5 41 41 H 1.09001 * 110.91019 * 341.46304 * 15 7 5 42 42 H 1.09002 * 113.27733 * 286.92851 * 16 2 1 43 43 H 1.09004 * 113.46737 * 332.73902 * 17 16 2 44 44 H 1.09003 * 113.51807 * 202.31007 * 17 16 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 46 46 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 47 47 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1586 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 1.7127 -1.8771 4.0087 9 6 1.8057 -1.8646 5.5778 10 6 1.8836 -0.3535 5.9077 11 6 2.7816 0.2292 4.7960 12 1 2.4936 1.2466 4.5312 13 8 4.1503 0.1686 5.2334 14 6 4.9462 -0.2146 4.0923 15 6 4.0768 -1.2877 3.3891 16 6 2.0400 -0.7212 -1.2493 17 6 1.5898 -0.0845 -2.5715 18 7 2.7723 0.7866 -2.4946 19 6 3.1103 2.0325 -2.9512 20 1 2.3995 2.6087 -3.5248 21 6 4.3645 2.5575 -2.6713 22 7 5.2306 1.8555 -1.9717 23 14 4.8230 4.2603 -3.2875 24 1 3.6824 4.8367 -4.0439 25 1 5.1436 5.1354 -2.1314 26 1 6.0076 4.1623 -4.1776 27 6 3.4341 -0.2720 -1.7172 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6317 1.1526 32 1 0.6959 -1.6840 3.6665 33 1 2.0740 -2.8268 3.6143 34 1 2.7042 -2.3807 5.9162 35 1 0.9138 -2.3107 6.0178 36 1 2.3388 -0.1993 6.8860 37 1 0.8922 0.0983 5.8736 38 1 5.8968 -0.6407 4.4132 39 1 5.1119 0.6375 3.4333 40 1 4.1863 -2.2570 3.8755 41 1 4.3238 -1.3561 2.3296 42 1 1.9087 -1.8024 -1.2063 43 1 0.6466 0.4562 -2.4939 44 1 1.6123 -0.7735 -3.4158 45 1 6.1072 2.2223 -1.7764 46 1 3.9432 -1.0110 -2.3358 47 1 4.0620 0.1089 -0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970144392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:32 Heat of formation + Delta-G solvation = -31.065634 kcal Electronic energy + Delta-G solvation = -27182.841971 eV Core-core repulsion = 23560.063895 eV Total energy + Delta-G solvation = -3622.778076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03772 -39.10019 -37.88384 -35.27936 -34.63584 -32.46921 -31.94028 -29.99862 -27.95145 -27.60693 -27.45004 -24.77450 -23.91644 -22.70819 -22.31857 -21.16501 -20.71124 -19.54589 -18.54384 -17.26968 -16.72406 -16.18700 -15.72101 -15.54997 -15.17186 -14.85624 -14.83936 -14.48934 -14.02121 -13.82915 -13.49102 -13.09322 -12.99166 -12.69716 -12.55215 -12.18874 -12.01925 -11.85254 -11.53592 -11.35731 -11.26858 -11.23678 -11.18692 -10.99953 -10.91480 -10.80726 -10.69691 -10.67336 -10.30633 -9.89388 -9.77031 -9.68480 -9.37051 -9.18290 -8.82785 -8.67915 -6.86176 -5.75080 -3.06990 2.83986 3.34421 3.41377 3.46470 3.49189 3.77156 4.23346 4.37740 4.48244 4.60087 4.88362 4.93707 5.00146 5.02706 5.20499 5.22345 5.26627 5.34763 5.41057 5.45294 5.53550 5.56187 5.64604 5.72759 5.75298 5.76802 5.80662 5.89022 5.90451 5.93279 6.03652 6.06106 6.10885 6.13255 6.29319 6.45290 6.53392 6.64134 6.73823 6.88421 6.92903 7.19178 7.31434 7.57076 7.79613 7.99712 8.49662 9.05630 9.72825 10.65464 11.42474 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.004231 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.214908 B = 6616.787871 C = 7487.354017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.170 3.830 3 H 0.103 0.897 4 N -0.714 5.714 5 C 0.531 3.469 6 O -0.533 6.533 7 C -0.116 4.116 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.089 3.911 12 H 0.098 0.902 13 O -0.373 6.373 14 C 0.047 3.953 15 C -0.142 4.142 16 C -0.155 4.155 17 C 0.126 3.874 18 N -0.608 5.608 19 C -0.217 4.217 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.159 3.841 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.034 0.966 45 H 0.252 0.748 46 H 0.023 0.977 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -12.194 13.437 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.121 0.879 4 N -0.364 5.364 5 C 0.316 3.684 6 O -0.409 6.409 7 C -0.120 4.120 8 C -0.144 4.144 9 C -0.157 4.157 10 C -0.162 4.162 11 C 0.031 3.969 12 H 0.116 0.884 13 O -0.293 6.293 14 C -0.030 4.030 15 C -0.180 4.180 16 C -0.175 4.175 17 C -0.001 4.001 18 N -0.334 5.334 19 C -0.345 4.345 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.033 3.967 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.228 0.772 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.041 0.959 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.635 -10.968 13.611 18.697 hybrid contribution 0.532 0.272 -0.902 1.082 sum -6.103 -10.696 12.709 17.697 Atomic orbital electron populations 1.22124 0.96026 1.01127 1.02221 1.20613 0.92723 0.98307 0.81705 0.87939 1.46007 1.67016 1.13623 1.09717 1.19945 0.77567 0.86927 0.84002 1.90705 1.49912 1.15688 1.84631 1.22618 0.97523 0.97067 0.94745 1.22752 0.98938 0.96371 0.96389 1.22855 1.01919 0.96395 0.94492 1.22507 0.99285 0.95545 0.98845 1.23380 0.82915 0.99229 0.91370 0.88430 1.88833 1.17150 1.90515 1.32768 1.23528 0.94925 0.96623 0.87920 1.23264 0.92202 0.99728 1.02821 1.23319 1.02094 0.97413 0.94706 1.22413 0.92598 0.92144 0.92957 1.45614 1.12044 1.12502 1.63209 1.18963 0.98165 0.88960 1.28383 0.90137 1.24760 0.96261 0.98558 1.00688 1.69823 1.06756 1.36948 1.43063 0.86073 0.78080 0.83803 0.77998 1.20420 1.21637 1.21789 1.22155 0.91385 0.88671 0.94454 0.93189 0.92838 0.91324 0.77230 0.90790 0.90460 0.90936 0.91199 0.90287 0.90454 0.88797 0.91607 0.89515 0.89357 0.91393 0.93841 0.94872 0.93795 0.95902 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.29 37.16 0.35 -2.00 16 2 C 0.17 2.95 2.43 -67.93 -0.16 2.79 16 3 H 0.10 2.36 7.36 -51.93 -0.38 1.98 16 4 N -0.71 -10.39 4.83 -53.81 -0.26 -10.65 16 5 C 0.53 8.45 6.46 -10.98 -0.07 8.38 16 6 O -0.53 -10.90 15.14 5.56 0.08 -10.82 16 7 C -0.12 -1.43 0.73 -153.34 -0.11 -1.54 16 8 C -0.11 -0.99 5.87 -23.92 -0.14 -1.13 16 9 C -0.12 -1.02 6.94 -23.47 -0.16 -1.18 16 10 C -0.12 -1.30 6.50 -25.05 -0.16 -1.47 16 11 C 0.09 1.20 3.88 -25.10 -0.10 1.11 16 12 H 0.10 1.58 6.74 -51.93 -0.35 1.23 16 13 O -0.37 -5.29 11.08 -35.23 -0.39 -5.68 16 14 C 0.05 0.59 7.72 38.21 0.29 0.89 16 15 C -0.14 -1.58 6.13 -24.83 -0.15 -1.73 16 16 C -0.16 -2.72 3.73 -89.97 -0.34 -3.06 16 17 C 0.13 2.49 8.08 -8.50 -0.07 2.42 16 18 N -0.61 -15.44 3.58 -184.57 -0.66 -16.10 16 19 C -0.22 -6.15 10.75 -15.06 -0.16 -6.32 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.53 11.50 55.49 0.64 -26.89 16 23 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 C 0.16 3.64 6.96 -8.36 -0.06 3.58 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.04 6.50 -51.93 -0.34 0.70 16 31 H 0.39 4.54 8.60 -40.82 -0.35 4.19 16 32 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 33 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.77 7.62 -51.93 -0.40 0.37 16 41 H 0.09 1.02 7.73 -51.93 -0.40 0.62 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.82 6.43 -51.93 -0.33 0.49 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 1.88 7.09 -51.93 -0.37 1.51 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -33.46 367.30 -9.15 -42.61 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.92 Total: 3.89 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.14 Total: 0.48 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.28 Total: -53.64 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.31 Total: -16.50 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.46 -9.15 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970144392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.540 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds