Wall clock time and date at job start Fri Apr 10 2020 17:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46816 * 2 1 4 4 N 1.46495 * 109.47439 * 119.99916 * 2 1 3 5 5 C 1.34777 * 120.00115 * 275.00503 * 4 2 1 6 6 O 1.21277 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00272 * 179.97438 * 5 4 2 8 8 C 1.54024 * 111.85513 * 298.26954 * 7 5 4 9 9 C 1.57194 * 103.35317 * 214.39792 * 8 7 5 10 10 C 1.54868 * 102.90542 * 37.59750 * 9 8 7 11 11 C 1.54335 * 104.13706 * 321.15521 * 10 9 8 12 12 H 1.08998 * 111.94020 * 147.00983 * 11 10 9 13 13 O 1.43814 * 108.58712 * 270.39676 * 11 10 9 14 14 C 1.44308 * 107.19545 * 140.23514 * 13 11 10 15 15 C 1.54620 * 111.90368 * 61.01095 * 7 5 4 16 16 C 1.53000 * 109.47081 * 240.00296 * 2 1 3 17 17 C 1.53495 * 114.20970 * 59.99991 * 16 2 1 18 18 N 1.47068 * 87.98832 * 87.51855 * 17 16 2 19 19 C 1.36931 * 136.05648 * 207.08648 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72253 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.47071 * 87.88415 * 27.34050 * 18 17 16 28 28 H 1.09001 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47554 * 300.00006 * 1 2 3 30 30 H 1.09001 * 109.47328 * 60.00053 * 1 2 3 31 31 H 0.96999 * 120.00224 * 94.99884 * 4 2 1 32 32 H 1.09006 * 110.43555 * 333.80687 * 8 7 5 33 33 H 1.08995 * 110.44312 * 96.31432 * 8 7 5 34 34 H 1.09001 * 110.78650 * 279.17864 * 9 8 7 35 35 H 1.08994 * 110.56924 * 155.91676 * 9 8 7 36 36 H 1.08999 * 110.49902 * 202.49310 * 10 9 8 37 37 H 1.09000 * 110.61063 * 79.87725 * 10 9 8 38 38 H 1.08997 * 110.61450 * 201.50185 * 14 13 11 39 39 H 1.08996 * 110.75123 * 78.57342 * 14 13 11 40 40 H 1.09002 * 110.91090 * 217.89423 * 15 7 5 41 41 H 1.09001 * 110.91019 * 341.46304 * 15 7 5 42 42 H 1.09002 * 113.27733 * 286.92851 * 16 2 1 43 43 H 1.09004 * 113.46737 * 332.73902 * 17 16 2 44 44 H 1.09003 * 113.51807 * 202.31007 * 17 16 2 45 45 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 46 46 H 1.08998 * 113.46338 * 87.43811 * 27 18 17 47 47 H 1.08993 * 113.47050 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1586 2.4115 7 6 2.6489 -0.7287 3.5877 8 6 1.7127 -1.8771 4.0087 9 6 1.8057 -1.8646 5.5778 10 6 1.8836 -0.3535 5.9077 11 6 2.7816 0.2292 4.7960 12 1 2.4936 1.2466 4.5312 13 8 4.1503 0.1686 5.2334 14 6 4.9462 -0.2146 4.0923 15 6 4.0768 -1.2877 3.3891 16 6 2.0400 -0.7212 -1.2493 17 6 1.5898 -0.0845 -2.5715 18 7 2.7723 0.7866 -2.4946 19 6 3.1103 2.0325 -2.9512 20 1 2.3995 2.6087 -3.5248 21 6 4.3645 2.5575 -2.6713 22 7 5.2306 1.8555 -1.9717 23 14 4.8230 4.2603 -3.2875 24 1 3.6824 4.8367 -4.0439 25 1 5.1436 5.1354 -2.1314 26 1 6.0076 4.1623 -4.1776 27 6 3.4341 -0.2720 -1.7172 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6317 1.1526 32 1 0.6959 -1.6840 3.6665 33 1 2.0740 -2.8268 3.6143 34 1 2.7042 -2.3807 5.9162 35 1 0.9138 -2.3107 6.0178 36 1 2.3388 -0.1993 6.8860 37 1 0.8922 0.0983 5.8736 38 1 5.8968 -0.6407 4.4132 39 1 5.1119 0.6375 3.4333 40 1 4.1863 -2.2570 3.8755 41 1 4.3238 -1.3561 2.3296 42 1 1.9087 -1.8024 -1.2063 43 1 0.6466 0.4562 -2.4939 44 1 1.6123 -0.7735 -3.4158 45 1 6.1072 2.2223 -1.7764 46 1 3.9432 -1.0110 -2.3358 47 1 4.0620 0.1089 -0.9119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970144392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:32 Heat of formation + Delta-G solvation = -54.563418 kcal Electronic energy + Delta-G solvation = -27183.860911 eV Core-core repulsion = 23560.063895 eV Total energy + Delta-G solvation = -3623.797016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13426 -40.56227 -39.33846 -36.21580 -36.11955 -34.26067 -33.23024 -31.35727 -29.51394 -28.85883 -28.35248 -26.44902 -25.61933 -24.07217 -23.49145 -22.37465 -21.65268 -20.92630 -19.89032 -18.79405 -18.34267 -17.55399 -16.93160 -16.80927 -16.57324 -16.38224 -15.85288 -15.74389 -15.52150 -15.30268 -14.85604 -14.58377 -14.39452 -13.91233 -13.68792 -13.44583 -13.25915 -13.22940 -13.11888 -12.88835 -12.54818 -12.46157 -12.37166 -12.17478 -12.12249 -12.04730 -11.94129 -11.91857 -11.81184 -11.49930 -11.47140 -11.06407 -10.93371 -10.80535 -10.50827 -10.06132 -8.90234 -7.93300 -5.24010 1.39284 1.41521 1.50565 1.58914 2.12352 2.44275 2.77307 3.29564 3.30000 3.47279 3.52615 3.58674 3.68710 3.89257 3.94993 4.02450 4.13284 4.19780 4.35312 4.41252 4.44955 4.51486 4.65993 4.68905 4.70609 4.76203 4.77242 4.80061 4.85727 4.86876 4.95504 4.97036 5.00315 5.05812 5.14105 5.19681 5.21012 5.23833 5.30054 5.41403 5.49658 5.54151 5.71392 5.87394 5.94798 6.59374 6.90073 7.28846 7.59785 8.60678 9.24394 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.004231 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.214908 B = 6616.787871 C = 7487.354017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.176 3.824 3 H 0.036 0.964 4 N -0.699 5.699 5 C 0.524 3.476 6 O -0.590 6.590 7 C -0.110 4.110 8 C -0.100 4.100 9 C -0.109 4.109 10 C -0.122 4.122 11 C 0.077 3.923 12 H 0.055 0.945 13 O -0.384 6.384 14 C 0.037 3.963 15 C -0.133 4.133 16 C -0.118 4.118 17 C 0.125 3.875 18 N -0.643 5.643 19 C -0.223 4.223 20 H 0.082 0.918 21 C -0.068 4.068 22 N -0.951 5.951 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.299 1.299 26 H -0.289 1.289 27 C 0.154 3.846 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.028 0.972 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.245 0.755 46 H 0.022 0.978 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.329 -15.715 13.833 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.071 3.929 3 H 0.054 0.946 4 N -0.350 5.350 5 C 0.311 3.689 6 O -0.470 6.470 7 C -0.114 4.114 8 C -0.138 4.138 9 C -0.146 4.146 10 C -0.159 4.159 11 C 0.019 3.981 12 H 0.073 0.927 13 O -0.303 6.303 14 C -0.039 4.039 15 C -0.171 4.171 16 C -0.138 4.138 17 C -0.001 4.001 18 N -0.369 5.369 19 C -0.352 4.352 20 H 0.100 0.900 21 C -0.261 4.261 22 N -0.600 5.600 23 Si 0.799 3.201 24 H -0.187 1.187 25 H -0.226 1.226 26 H -0.215 1.215 27 C 0.028 3.972 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.288 -14.548 13.986 21.816 hybrid contribution 1.025 1.422 -1.031 2.034 sum -7.263 -13.126 12.955 19.821 Atomic orbital electron populations 1.22011 0.93470 1.03361 1.01505 1.20312 0.94521 0.95202 0.82872 0.94593 1.45808 1.66340 1.14369 1.08497 1.20696 0.76523 0.86396 0.85264 1.90685 1.52347 1.18373 1.85597 1.22609 0.99132 0.97565 0.92055 1.22834 0.98050 0.95897 0.97009 1.22854 1.03571 0.94384 0.93827 1.22512 0.98409 0.97362 0.97615 1.23416 0.83318 0.97858 0.93557 0.92721 1.88819 1.17615 1.90713 1.33185 1.23643 0.96545 0.96164 0.87535 1.23311 0.90513 1.00582 1.02661 1.23081 0.97109 1.00107 0.93479 1.22647 0.91124 0.91592 0.94705 1.45964 1.14693 1.12685 1.63583 1.19333 0.98033 0.90678 1.27128 0.89977 1.25552 0.96658 1.02139 1.01748 1.70006 1.06746 1.38419 1.44877 0.85113 0.78097 0.79712 0.77135 1.18730 1.22630 1.21549 1.22155 0.93649 0.88162 0.93238 0.89287 0.94086 0.91625 0.74850 0.90784 0.87272 0.89926 0.88827 0.90037 0.90344 0.86146 0.95312 0.85663 0.89915 0.86039 0.92810 0.92593 0.94629 0.96044 0.94988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.29 71.98 0.67 -3.40 16 2 C 0.18 6.04 2.43 44.99 0.11 6.14 16 3 H 0.04 1.75 7.36 -2.39 -0.02 1.73 16 4 N -0.70 -19.66 4.83 -442.54 -2.14 -21.80 16 5 C 0.52 17.06 6.46 87.66 0.57 17.63 16 6 O -0.59 -25.99 15.14 -3.02 -0.05 -26.04 16 7 C -0.11 -2.60 0.73 -51.43 -0.04 -2.64 16 8 C -0.10 -1.48 5.87 32.42 0.19 -1.29 16 9 C -0.11 -1.45 6.94 32.71 0.23 -1.22 16 10 C -0.12 -2.40 6.50 31.69 0.21 -2.20 16 11 C 0.08 2.13 3.88 31.65 0.12 2.25 16 12 H 0.05 1.97 6.74 -2.39 -0.02 1.95 16 13 O -0.38 -11.05 11.08 -148.98 -1.65 -12.70 16 14 C 0.04 0.97 7.72 72.66 0.56 1.53 16 15 C -0.13 -2.73 6.13 31.82 0.20 -2.53 16 16 C -0.12 -3.89 3.73 -10.37 -0.04 -3.93 16 17 C 0.12 4.70 8.08 83.18 0.67 5.37 16 18 N -0.64 -33.05 3.58 -737.87 -2.64 -35.69 16 19 C -0.22 -12.94 10.75 84.04 0.90 -12.03 16 20 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 22 N -0.95 -59.63 11.50 21.65 0.25 -59.38 16 23 Si 0.97 48.09 29.55 68.60 2.03 50.12 16 24 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 26 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 27 C 0.15 7.10 6.96 83.27 0.58 7.68 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.87 6.50 -2.39 -0.02 1.86 16 31 H 0.41 8.24 8.60 -92.71 -0.80 7.44 16 32 H 0.07 1.13 7.93 -2.38 -0.02 1.12 16 33 H 0.11 0.97 7.70 -2.39 -0.02 0.96 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.13 1.66 7.62 -2.39 -0.02 1.64 16 41 H 0.08 1.81 7.73 -2.39 -0.02 1.79 16 42 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.05 1.92 6.43 -2.39 -0.02 1.91 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.24 15.00 8.31 -92.70 -0.77 14.23 16 46 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.03 1.72 7.09 -2.39 -0.02 1.71 16 Total: -1.00 -80.56 367.30 1.35 -79.21 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.16 Total: 18.51 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.39 Total: 7.77 kcal Atomic # 7 Polarization: -112.34 SS G_CDS: -4.53 Total: -116.87 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.70 Total: -38.74 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -80.56 1.35 -79.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970144392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.646 kcal (2) G-P(sol) polarization free energy of solvation -80.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds