Wall clock time and date at job start Fri Apr 10 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47136 * 2 1 4 4 N 1.46501 * 109.46854 * 240.00037 * 2 1 3 5 5 C 1.34780 * 119.99796 * 85.00032 * 4 2 1 6 6 O 1.21282 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99977 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.38354 * 302.58721 * 7 5 4 9 9 O 1.44626 * 110.43233 * 180.02562 * 7 5 4 10 10 C 1.44637 * 104.50741 * 198.49401 * 9 7 5 11 11 C 1.54561 * 104.47282 * 42.75270 * 10 9 7 12 12 H 1.08998 * 112.78615 * 212.76262 * 11 10 9 13 13 C 1.55419 * 108.83158 * 86.84696 * 11 10 9 14 14 C 1.54827 * 104.40369 * 224.98386 * 13 11 10 15 15 C 1.54831 * 102.73306 * 38.54944 * 14 13 11 16 16 C 1.54128 * 104.36691 * 321.72259 * 15 14 13 17 17 H 1.08998 * 112.27550 * 259.85935 * 16 15 14 18 18 C 1.52999 * 109.47179 * 120.00256 * 2 1 3 19 19 C 1.53946 * 113.84014 * 201.35003 * 18 2 1 20 20 N 1.47580 * 86.11645 * 90.74977 * 19 18 2 21 21 C 1.36940 * 134.49194 * 204.64076 * 20 19 18 22 22 H 1.08004 * 119.99910 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00130 * 0.02562 * 21 20 19 24 24 N 1.31623 * 119.99843 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47249 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47360 * 120.00281 * 25 23 21 28 28 H 1.48499 * 109.47453 * 240.00193 * 25 23 21 29 29 C 1.47585 * 91.01539 * 24.64210 * 20 19 18 30 30 H 1.08999 * 109.47253 * 59.99559 * 1 2 3 31 31 H 1.08991 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46507 * 299.99983 * 1 2 3 33 33 H 0.96992 * 120.00135 * 265.00007 * 4 2 1 34 34 H 1.09004 * 110.43212 * 284.00721 * 10 9 7 35 35 H 1.08991 * 110.54219 * 161.55578 * 10 9 7 36 36 H 1.08996 * 110.20368 * 106.36500 * 13 11 10 37 37 H 1.08996 * 110.77723 * 343.88675 * 13 11 10 38 38 H 1.08999 * 110.76013 * 280.23582 * 14 13 11 39 39 H 1.09000 * 110.75848 * 156.85558 * 14 13 11 40 40 H 1.09002 * 110.45492 * 203.00606 * 15 14 13 41 41 H 1.08989 * 110.56529 * 80.49441 * 15 14 13 42 42 H 1.09002 * 112.94549 * 69.66462 * 18 2 1 43 43 H 1.08996 * 113.77105 * 205.05389 * 19 18 2 44 44 H 1.09002 * 113.76556 * 336.45321 * 19 18 2 45 45 H 0.96992 * 119.99795 * 179.97438 * 24 23 21 46 46 H 1.08996 * 113.76681 * 221.05446 * 29 20 19 47 47 H 1.08997 * 113.86988 * 89.67359 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6487 -0.7287 -3.5878 8 1 3.6290 -1.1670 -3.4001 9 8 2.7063 0.1830 -4.7090 10 6 2.7555 -0.6755 -5.8720 11 6 1.7184 -1.7832 -5.5786 12 1 1.9982 -2.7469 -6.0042 13 6 0.3198 -1.2995 -6.0534 14 6 -0.6323 -1.6745 -4.8915 15 6 0.2237 -1.3714 -3.6375 16 6 1.6458 -1.8193 -4.0278 17 1 1.8960 -2.7998 -3.6226 18 6 2.0400 -0.7213 1.2492 19 6 3.4839 -0.3521 1.6350 20 7 2.8839 0.7101 2.4654 21 6 3.3224 1.9147 2.9470 22 1 2.6681 2.5250 3.5519 23 6 4.6079 2.3515 2.6577 24 7 5.4051 1.6080 1.9200 25 14 5.2058 3.9949 3.3140 26 1 4.1260 4.6328 4.1094 27 1 6.3950 3.7803 4.1771 28 1 5.5719 4.8782 2.1777 29 6 1.6214 -0.0473 2.5684 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 2.2490 -1.6317 -1.1527 34 1 3.7505 -1.1061 -5.9853 35 1 2.4773 -0.1215 -6.7684 36 1 0.0309 -1.8209 -6.9659 37 1 0.3177 -0.2216 -6.2148 38 1 -0.8955 -2.7314 -4.9334 39 1 -1.5266 -1.0516 -4.9085 40 1 -0.1354 -1.9454 -2.7832 41 1 0.2087 -0.3051 -3.4122 42 1 1.8528 -1.7949 1.2262 43 1 3.9958 -1.1233 2.2105 44 1 4.0785 0.0243 0.8025 45 1 6.3032 1.9133 1.7176 46 1 0.7290 0.5724 2.4813 47 1 1.5843 -0.7293 3.4178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970177338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:38 Heat of formation + Delta-G solvation = -30.529218 kcal Electronic energy + Delta-G solvation = -26989.055724 eV Core-core repulsion = 23366.300908 eV Total energy + Delta-G solvation = -3622.754815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96538 -39.10212 -37.79681 -35.80334 -34.46253 -32.20881 -31.34842 -30.00647 -29.43302 -27.52425 -26.36453 -24.86291 -24.01671 -23.36829 -21.80629 -21.03904 -20.23703 -19.67667 -18.61563 -17.15309 -16.76908 -16.64665 -16.09092 -15.41625 -15.04233 -14.83512 -14.70231 -14.53270 -14.47011 -13.77365 -13.53933 -13.37014 -12.95315 -12.67209 -12.48743 -11.93384 -11.81152 -11.71906 -11.57276 -11.39314 -11.31498 -11.25824 -11.02193 -10.98586 -10.89633 -10.80614 -10.74258 -10.60738 -10.25671 -9.87834 -9.81567 -9.67053 -9.43238 -9.24202 -8.77355 -8.61764 -6.80707 -5.69937 -3.01665 2.90066 3.15181 3.44741 3.49839 3.52630 3.97716 4.04933 4.27650 4.52461 4.59960 4.81776 4.89419 5.02966 5.04655 5.19337 5.20811 5.24031 5.27875 5.28597 5.35156 5.39703 5.50822 5.55080 5.58308 5.60364 5.72198 5.78699 5.84761 5.92248 5.95078 6.01170 6.07023 6.12725 6.20978 6.31934 6.49471 6.54764 6.60689 6.70020 6.78264 6.95314 7.25530 7.38498 7.64039 7.84688 8.05597 8.57736 9.11694 9.78368 10.66631 11.47211 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.003702 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.729738 B = 7562.417341 C = 8295.053495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.101 0.899 4 N -0.715 5.715 5 C 0.525 3.475 6 O -0.520 6.520 7 C 0.057 3.943 8 H 0.092 0.908 9 O -0.338 6.338 10 C 0.044 3.956 11 C -0.123 4.123 12 H 0.095 0.905 13 C -0.117 4.117 14 C -0.121 4.121 15 C -0.125 4.125 16 C -0.113 4.113 17 H 0.098 0.902 18 C -0.149 4.149 19 C 0.166 3.834 20 N -0.609 5.609 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.126 3.874 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.394 0.606 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.252 0.748 46 H 0.046 0.954 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 -13.337 -15.270 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.119 0.881 4 N -0.367 5.367 5 C 0.310 3.690 6 O -0.394 6.394 7 C -0.004 4.004 8 H 0.110 0.890 9 O -0.255 6.255 10 C -0.034 4.034 11 C -0.142 4.142 12 H 0.113 0.887 13 C -0.154 4.154 14 C -0.159 4.159 15 C -0.163 4.163 16 C -0.132 4.132 17 H 0.116 0.884 18 C -0.168 4.168 19 C 0.040 3.960 20 N -0.336 5.336 21 C -0.350 4.350 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.227 0.773 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.997 -11.925 -15.254 21.791 hybrid contribution 0.760 0.032 0.526 0.924 sum -9.238 -11.893 -14.728 21.064 Atomic orbital electron populations 1.22138 0.96057 1.01147 1.02198 1.20643 0.92635 0.98316 0.81702 0.88074 1.45918 1.67659 1.13605 1.09522 1.19843 0.78067 0.87259 0.83832 1.90748 1.48645 1.15512 1.84531 1.23031 0.99408 0.90008 0.87999 0.89039 1.89440 1.94973 1.27460 1.13643 1.23593 0.97946 0.91680 0.90136 1.23454 0.96627 0.99227 0.94854 0.88695 1.22626 0.93381 1.01521 0.97901 1.22446 0.97960 1.00949 0.94506 1.22551 0.93128 1.02647 0.97927 1.23183 0.96099 0.98301 0.95594 0.88409 1.23455 1.01415 0.97343 0.94634 1.22277 0.90733 0.88712 0.94232 1.45983 1.10779 1.16503 1.60322 1.19053 0.96893 0.92492 1.26542 0.90303 1.24752 0.96365 0.98647 1.00576 1.69815 1.07774 1.37412 1.41723 0.86087 0.78449 0.83413 0.78076 1.20477 1.21860 1.21678 1.22578 0.91509 0.92939 0.93031 0.92764 0.93147 0.91434 0.77269 0.92152 0.88623 0.91733 0.90835 0.91577 0.91457 0.91179 0.90115 0.91835 0.95779 0.90714 0.93817 0.93543 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.31 37.16 0.35 -1.98 16 2 C 0.17 2.98 2.34 -67.93 -0.16 2.82 16 3 H 0.10 2.34 7.44 -51.93 -0.39 1.96 16 4 N -0.72 -10.60 4.98 -53.80 -0.27 -10.87 16 5 C 0.53 8.81 4.93 -10.98 -0.05 8.76 16 6 O -0.52 -11.39 15.90 -13.60 -0.22 -11.61 16 7 C 0.06 0.75 3.48 -27.06 -0.09 0.65 16 8 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 9 O -0.34 -5.08 10.96 -54.39 -0.60 -5.68 16 10 C 0.04 0.43 6.86 37.98 0.26 0.69 16 11 C -0.12 -1.02 4.11 -87.30 -0.36 -1.38 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.12 -0.98 6.29 -24.48 -0.15 -1.13 16 14 C -0.12 -1.05 6.90 -24.80 -0.17 -1.22 16 15 C -0.13 -1.31 5.49 -25.18 -0.14 -1.45 16 16 C -0.11 -1.07 3.86 -88.00 -0.34 -1.41 16 17 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.15 -2.64 3.53 -89.69 -0.32 -2.95 16 19 C 0.17 3.85 7.06 -2.97 -0.02 3.83 16 20 N -0.61 -15.65 3.56 -177.91 -0.63 -16.29 16 21 C -0.22 -6.37 10.70 -15.06 -0.16 -6.54 16 22 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -27.98 11.38 55.49 0.63 -27.35 16 25 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 C 0.13 2.52 8.30 -2.97 -0.02 2.49 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.00 6.58 -51.93 -0.34 0.66 16 33 H 0.39 4.54 8.60 -40.82 -0.35 4.19 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.84 7.79 -51.93 -0.40 0.43 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.72 7.64 -51.93 -0.40 0.33 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.14 6.11 -51.94 -0.32 0.82 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.96 7.11 -51.93 -0.37 1.59 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 46 H 0.05 0.88 6.56 -51.93 -0.34 0.54 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -35.22 366.14 -10.02 -45.23 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.95 Total: 2.17 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.48 Total: 0.90 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.27 Total: -54.50 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.81 Total: -17.28 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.22 -10.02 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.706 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds