Wall clock time and date at job start Fri Apr 10 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47136 * 2 1 4 4 N 1.46501 * 109.46854 * 240.00037 * 2 1 3 5 5 C 1.34780 * 119.99796 * 85.00032 * 4 2 1 6 6 O 1.21282 * 119.99917 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99977 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.38354 * 302.58721 * 7 5 4 9 9 O 1.44626 * 110.43233 * 180.02562 * 7 5 4 10 10 C 1.44637 * 104.50741 * 198.49401 * 9 7 5 11 11 C 1.54561 * 104.47282 * 42.75270 * 10 9 7 12 12 H 1.08998 * 112.78615 * 212.76262 * 11 10 9 13 13 C 1.55419 * 108.83158 * 86.84696 * 11 10 9 14 14 C 1.54827 * 104.40369 * 224.98386 * 13 11 10 15 15 C 1.54831 * 102.73306 * 38.54944 * 14 13 11 16 16 C 1.54128 * 104.36691 * 321.72259 * 15 14 13 17 17 H 1.08998 * 112.27550 * 259.85935 * 16 15 14 18 18 C 1.52999 * 109.47179 * 120.00256 * 2 1 3 19 19 C 1.53946 * 113.84014 * 201.35003 * 18 2 1 20 20 N 1.47580 * 86.11645 * 90.74977 * 19 18 2 21 21 C 1.36940 * 134.49194 * 204.64076 * 20 19 18 22 22 H 1.08004 * 119.99910 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00130 * 0.02562 * 21 20 19 24 24 N 1.31623 * 119.99843 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47249 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47360 * 120.00281 * 25 23 21 28 28 H 1.48499 * 109.47453 * 240.00193 * 25 23 21 29 29 C 1.47585 * 91.01539 * 24.64210 * 20 19 18 30 30 H 1.08999 * 109.47253 * 59.99559 * 1 2 3 31 31 H 1.08991 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46507 * 299.99983 * 1 2 3 33 33 H 0.96992 * 120.00135 * 265.00007 * 4 2 1 34 34 H 1.09004 * 110.43212 * 284.00721 * 10 9 7 35 35 H 1.08991 * 110.54219 * 161.55578 * 10 9 7 36 36 H 1.08996 * 110.20368 * 106.36500 * 13 11 10 37 37 H 1.08996 * 110.77723 * 343.88675 * 13 11 10 38 38 H 1.08999 * 110.76013 * 280.23582 * 14 13 11 39 39 H 1.09000 * 110.75848 * 156.85558 * 14 13 11 40 40 H 1.09002 * 110.45492 * 203.00606 * 15 14 13 41 41 H 1.08989 * 110.56529 * 80.49441 * 15 14 13 42 42 H 1.09002 * 112.94549 * 69.66462 * 18 2 1 43 43 H 1.08996 * 113.77105 * 205.05389 * 19 18 2 44 44 H 1.09002 * 113.76556 * 336.45321 * 19 18 2 45 45 H 0.96992 * 119.99795 * 179.97438 * 24 23 21 46 46 H 1.08996 * 113.76681 * 221.05446 * 29 20 19 47 47 H 1.08997 * 113.86988 * 89.67359 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8581 1.1585 -2.4117 7 6 2.6487 -0.7287 -3.5878 8 1 3.6290 -1.1670 -3.4001 9 8 2.7063 0.1830 -4.7090 10 6 2.7555 -0.6755 -5.8720 11 6 1.7184 -1.7832 -5.5786 12 1 1.9982 -2.7469 -6.0042 13 6 0.3198 -1.2995 -6.0534 14 6 -0.6323 -1.6745 -4.8915 15 6 0.2237 -1.3714 -3.6375 16 6 1.6458 -1.8193 -4.0278 17 1 1.8960 -2.7998 -3.6226 18 6 2.0400 -0.7213 1.2492 19 6 3.4839 -0.3521 1.6350 20 7 2.8839 0.7101 2.4654 21 6 3.3224 1.9147 2.9470 22 1 2.6681 2.5250 3.5519 23 6 4.6079 2.3515 2.6577 24 7 5.4051 1.6080 1.9200 25 14 5.2058 3.9949 3.3140 26 1 4.1260 4.6328 4.1094 27 1 6.3950 3.7803 4.1771 28 1 5.5719 4.8782 2.1777 29 6 1.6214 -0.0473 2.5684 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8901 33 1 2.2490 -1.6317 -1.1527 34 1 3.7505 -1.1061 -5.9853 35 1 2.4773 -0.1215 -6.7684 36 1 0.0309 -1.8209 -6.9659 37 1 0.3177 -0.2216 -6.2148 38 1 -0.8955 -2.7314 -4.9334 39 1 -1.5266 -1.0516 -4.9085 40 1 -0.1354 -1.9454 -2.7832 41 1 0.2087 -0.3051 -3.4122 42 1 1.8528 -1.7949 1.2262 43 1 3.9958 -1.1233 2.2105 44 1 4.0785 0.0243 0.8025 45 1 6.3032 1.9133 1.7176 46 1 0.7290 0.5724 2.4813 47 1 1.5843 -0.7293 3.4178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970177338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:37 Heat of formation + Delta-G solvation = -54.926233 kcal Electronic energy + Delta-G solvation = -26990.113658 eV Core-core repulsion = 23366.300908 eV Total energy + Delta-G solvation = -3623.812749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.96800 -40.48905 -39.30881 -36.68761 -35.97216 -34.19275 -32.56707 -31.01390 -30.37241 -29.43299 -27.27053 -26.50375 -25.59577 -24.57716 -23.20340 -22.08552 -21.25462 -20.69452 -20.10589 -18.75062 -18.07981 -17.85456 -17.39248 -16.90736 -16.41207 -16.15368 -15.81162 -15.66885 -15.47925 -15.24858 -14.94921 -14.66874 -14.37475 -14.24679 -13.81127 -13.37582 -13.22083 -13.18606 -12.87388 -12.54372 -12.46146 -12.38965 -12.36026 -12.12425 -12.02226 -11.94646 -11.78407 -11.73726 -11.68026 -11.49207 -11.40998 -11.24196 -10.90270 -10.80964 -10.52178 -10.02531 -8.87371 -7.90889 -5.21482 1.39933 1.42552 1.51457 1.62900 1.98101 2.46236 3.08829 3.27338 3.31155 3.44126 3.51765 3.69529 3.76875 3.90960 3.94478 4.13672 4.23395 4.35751 4.42626 4.43551 4.52258 4.55080 4.57496 4.67925 4.68432 4.74241 4.78319 4.83646 4.85724 4.87720 4.89653 5.03075 5.06141 5.18980 5.20822 5.24567 5.26536 5.28814 5.32898 5.49905 5.53673 5.58574 5.72518 5.78841 5.98058 6.63999 6.93753 7.33965 7.62915 8.58762 9.26086 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.003702 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.729738 B = 7562.417341 C = 8295.053495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.177 3.823 3 H 0.034 0.966 4 N -0.699 5.699 5 C 0.520 3.480 6 O -0.585 6.585 7 C 0.056 3.944 8 H 0.109 0.891 9 O -0.385 6.385 10 C 0.034 3.966 11 C -0.112 4.112 12 H 0.131 0.869 13 C -0.119 4.119 14 C -0.117 4.117 15 C -0.128 4.128 16 C -0.103 4.103 17 H 0.136 0.864 18 C -0.113 4.113 19 C 0.160 3.840 20 N -0.643 5.643 21 C -0.229 4.229 22 H 0.081 0.919 23 C -0.070 4.070 24 N -0.952 5.952 25 Si 0.971 3.029 26 H -0.264 1.264 27 H -0.289 1.289 28 H -0.299 1.299 29 C 0.125 3.875 30 H 0.038 0.962 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.035 0.965 42 H 0.118 0.882 43 H 0.022 0.978 44 H 0.034 0.966 45 H 0.245 0.755 46 H 0.056 0.944 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 -16.824 -15.721 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.072 3.928 3 H 0.052 0.948 4 N -0.352 5.352 5 C 0.307 3.693 6 O -0.464 6.464 7 C -0.005 4.005 8 H 0.126 0.874 9 O -0.304 6.304 10 C -0.042 4.042 11 C -0.130 4.130 12 H 0.149 0.851 13 C -0.156 4.156 14 C -0.155 4.155 15 C -0.165 4.165 16 C -0.122 4.122 17 H 0.154 0.846 18 C -0.132 4.132 19 C 0.035 3.965 20 N -0.370 5.370 21 C -0.358 4.358 22 H 0.098 0.902 23 C -0.263 4.263 24 N -0.602 5.602 25 Si 0.799 3.201 26 H -0.188 1.188 27 H -0.215 1.215 28 H -0.227 1.227 29 C 0.000 4.000 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.136 0.864 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.518 -15.479 -15.688 24.867 hybrid contribution 1.178 1.137 0.653 1.763 sum -10.341 -14.341 -15.035 23.209 Atomic orbital electron populations 1.22013 0.93402 1.03392 1.01455 1.20340 0.94497 0.95147 0.82791 0.94784 1.45707 1.66848 1.14366 1.08287 1.20644 0.76770 0.86647 0.85196 1.90709 1.51557 1.18527 1.85607 1.23161 1.01118 0.90248 0.85985 0.87377 1.89406 1.95314 1.30052 1.15588 1.23876 0.99680 0.91963 0.88687 1.23516 0.95665 0.99983 0.93876 0.85131 1.22639 0.93767 1.00264 0.98961 1.22458 0.97329 1.02251 0.93444 1.22516 0.94587 0.99991 0.99452 1.23307 0.94004 0.98278 0.96599 0.84644 1.23173 0.96470 1.00101 0.93472 1.22228 0.93409 0.88094 0.92796 1.46374 1.13380 1.16598 1.60696 1.19436 0.96875 0.94072 1.25367 0.90171 1.25555 0.96953 1.02100 1.01683 1.70002 1.07649 1.39008 1.43510 0.85115 0.78184 0.79560 0.77192 1.18824 1.21549 1.22655 1.22833 0.89564 0.92771 0.94811 0.94279 0.89212 0.91508 0.74788 0.90425 0.88226 0.89381 0.93470 0.89036 0.92301 0.89919 0.94609 0.86418 0.96022 0.94802 0.94647 0.92580 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.31 71.98 0.67 -3.40 16 2 C 0.18 6.18 2.34 44.99 0.11 6.28 16 3 H 0.03 1.67 7.44 -2.39 -0.02 1.66 16 4 N -0.70 -20.35 4.98 -442.52 -2.20 -22.55 16 5 C 0.52 18.06 4.93 87.66 0.43 18.49 16 6 O -0.58 -27.70 15.90 15.28 0.24 -27.46 16 7 C 0.06 1.44 3.48 30.38 0.11 1.54 16 8 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 9 O -0.38 -11.91 10.96 -130.66 -1.43 -13.34 16 10 C 0.03 0.63 6.86 72.51 0.50 1.13 16 11 C -0.11 -1.50 4.11 -8.64 -0.04 -1.53 16 12 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 13 C -0.12 -1.74 6.29 32.05 0.20 -1.54 16 14 C -0.12 -1.75 6.90 31.84 0.22 -1.53 16 15 C -0.13 -2.46 5.49 31.60 0.17 -2.29 16 16 C -0.10 -1.66 3.86 -9.10 -0.04 -1.70 16 17 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 18 C -0.11 -3.78 3.53 -10.13 -0.04 -3.81 16 19 C 0.16 7.52 7.06 86.48 0.61 8.13 16 20 N -0.64 -33.45 3.56 -716.78 -2.55 -36.00 16 21 C -0.23 -13.42 10.70 84.03 0.90 -12.52 16 22 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 23 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 24 N -0.95 -60.35 11.38 21.65 0.25 -60.10 16 25 Si 0.97 48.69 29.55 68.60 2.03 50.72 16 26 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 27 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 29 C 0.13 4.76 8.30 86.48 0.72 5.48 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.89 6.58 -2.38 -0.02 1.87 16 33 H 0.42 8.44 8.60 -92.71 -0.80 7.64 16 34 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.10 1.69 7.79 -2.39 -0.02 1.67 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.93 7.64 -2.39 -0.02 0.91 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 1.03 6.11 -2.39 -0.01 1.02 16 42 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 43 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.03 1.85 7.11 -2.39 -0.02 1.84 16 45 H 0.24 15.15 8.31 -92.71 -0.77 14.37 16 46 H 0.06 2.03 6.56 -2.39 -0.02 2.02 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -85.11 366.14 1.48 -83.62 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.16 Total: 16.13 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.99 Total: 8.98 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -4.51 Total: -118.65 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -1.19 Total: -40.80 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Total: -85.11 1.48 -83.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.697 kcal (2) G-P(sol) polarization free energy of solvation -85.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds