Wall clock time and date at job start Fri Apr 10 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46796 * 2 1 4 4 N 1.46495 * 109.47188 * 119.99553 * 2 1 3 5 5 C 1.34774 * 120.00241 * 275.00248 * 4 2 1 6 6 O 1.21274 * 120.00233 * 359.97438 * 5 4 2 7 7 C 1.50705 * 120.00223 * 179.97438 * 5 4 2 8 8 H 1.09000 * 110.45299 * 61.14883 * 7 5 4 9 9 C 1.54510 * 110.50984 * 298.54868 * 7 5 4 10 10 C 1.54477 * 104.18108 * 241.14510 * 9 7 5 11 11 O 1.44642 * 104.69773 * 336.19290 * 10 9 7 12 12 C 1.44415 * 105.37338 * 40.34325 * 11 10 9 13 13 H 1.09003 * 110.37369 * 78.39849 * 12 11 10 14 14 C 1.52995 * 110.37805 * 200.73667 * 12 11 10 15 15 C 1.53008 * 117.49641 * 4.12742 * 14 12 11 16 16 C 1.53002 * 117.49775 * 295.47118 * 14 12 11 17 17 C 1.53000 * 109.47174 * 239.99643 * 2 1 3 18 18 C 1.53952 * 113.74215 * 158.74109 * 17 2 1 19 19 N 1.47813 * 86.03327 * 222.08770 * 18 17 2 20 20 C 1.36944 * 134.45314 * 204.64628 * 19 18 17 21 21 H 1.07997 * 119.99747 * 179.86696 * 20 19 18 22 22 C 1.38811 * 119.99589 * 359.86322 * 20 19 18 23 23 N 1.31614 * 120.00431 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99695 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46865 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46915 * 119.99986 * 24 22 20 27 27 H 1.48498 * 109.46847 * 239.99937 * 24 22 20 28 28 C 1.47575 * 91.05530 * 24.54894 * 19 18 17 29 29 H 1.09002 * 109.47689 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47067 * 300.00269 * 1 2 3 31 31 H 1.09002 * 109.47487 * 60.00387 * 1 2 3 32 32 H 0.97008 * 119.99712 * 95.00044 * 4 2 1 33 33 H 1.09002 * 110.51305 * 359.86040 * 9 7 5 34 34 H 1.08994 * 110.51141 * 122.43370 * 9 7 5 35 35 H 1.09006 * 110.37498 * 94.92285 * 10 9 7 36 36 H 1.09000 * 110.37254 * 217.25804 * 10 9 7 37 37 H 1.09004 * 115.55369 * 149.79644 * 14 12 11 38 38 H 1.08995 * 117.49557 * 0.02562 * 15 14 12 39 39 H 1.09000 * 117.49474 * 145.01502 * 15 14 12 40 40 H 1.09005 * 117.49523 * 214.97653 * 16 14 12 41 41 H 1.08995 * 117.49781 * 359.97438 * 16 14 12 42 42 H 1.08994 * 112.94374 * 290.33777 * 17 2 1 43 43 H 1.09004 * 113.76475 * 336.34927 * 18 17 2 44 44 H 1.08994 * 113.76587 * 107.74697 * 18 17 2 45 45 H 0.97001 * 120.00489 * 179.97438 * 23 22 20 46 46 H 1.09002 * 113.77002 * 221.15123 * 28 19 18 47 47 H 1.09000 * 113.76705 * 89.75550 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7286 3.5878 8 1 3.6563 -1.1105 3.4229 9 6 1.6917 -1.8770 3.9780 10 6 1.1983 -1.4949 5.3911 11 8 2.2281 -0.6259 5.9168 12 6 2.6209 0.2151 4.8105 13 1 1.8903 1.0098 4.6598 14 6 4.0098 0.8071 5.0582 15 6 4.7556 0.3569 6.3161 16 6 4.1680 1.7682 6.2381 17 6 2.0400 -0.7213 -1.2492 18 6 3.4848 -0.3521 -1.6317 19 7 2.9978 -0.3178 -3.0268 20 6 3.5874 -0.4759 -4.2526 21 1 2.9927 -0.4039 -5.1512 22 6 4.9495 -0.7285 -4.3401 23 7 5.6742 -0.8166 -3.2450 24 14 5.7541 -0.9435 -6.0123 25 1 4.7291 -0.7986 -7.0770 26 1 6.8043 0.0907 -6.1929 27 1 6.3684 -2.2928 -6.0962 28 6 1.6213 -0.0473 -2.5684 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1526 33 1 0.8542 -1.9294 3.2822 34 1 2.2255 -2.8270 4.0038 35 1 0.2486 -0.9634 5.3307 36 1 1.0968 -2.3855 6.0113 37 1 4.6029 1.0046 4.1651 38 1 4.2568 -0.3613 6.9669 39 1 5.8391 0.2585 6.2506 40 1 4.8653 2.5978 6.1214 41 1 3.2824 1.9791 6.8375 42 1 1.8527 -1.7948 -1.2262 43 1 3.8047 0.6190 -1.2540 44 1 4.2070 -1.1448 -1.4366 45 1 6.6260 -0.9935 -3.3061 46 1 0.8586 -0.5970 -3.1199 47 1 1.3927 1.0136 -2.4666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970192863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:45 Heat of formation + Delta-G solvation = -28.636224 kcal Electronic energy + Delta-G solvation = -26061.753885 eV Core-core repulsion = 22439.081156 eV Total energy + Delta-G solvation = -3622.672729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66798 -40.31902 -39.30131 -37.35415 -36.18335 -34.25680 -33.52999 -31.43066 -30.13399 -29.34928 -26.69821 -25.79988 -25.14394 -23.60037 -23.17928 -22.57908 -21.41284 -21.26916 -20.45114 -18.78472 -18.32246 -17.64006 -17.28035 -16.92822 -16.47050 -16.27687 -16.00672 -15.71980 -15.52762 -15.13731 -14.79118 -14.65749 -14.46810 -14.18685 -13.57518 -13.44173 -13.27666 -13.10682 -12.96544 -12.87594 -12.73126 -12.56540 -12.37836 -12.33069 -12.29977 -11.97530 -11.90636 -11.75358 -11.48098 -11.25656 -11.20396 -11.10603 -10.91324 -10.84203 -10.51101 -10.02958 -8.92784 -7.91591 -5.25100 1.44669 1.45875 1.56010 1.61253 2.12600 2.46441 2.81400 2.89786 3.29465 3.37406 3.48142 3.58012 3.67793 3.82083 3.95202 4.00936 4.02438 4.08769 4.24419 4.30022 4.34650 4.42783 4.50097 4.58245 4.59442 4.74117 4.80193 4.81652 4.83624 4.86055 4.86963 4.98327 5.00845 5.02262 5.06852 5.11403 5.22009 5.25347 5.33479 5.34627 5.48967 5.56609 5.66787 5.82687 5.93005 6.57969 6.91194 7.25608 7.60068 8.55746 9.25393 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.003024 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.209058 B = 9257.576719 C =10072.156975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.057 0.943 4 N -0.707 5.707 5 C 0.522 3.478 6 O -0.580 6.580 7 C -0.135 4.135 8 H 0.121 0.879 9 C -0.139 4.139 10 C 0.041 3.959 11 O -0.379 6.379 12 C 0.125 3.875 13 H 0.067 0.933 14 C -0.170 4.170 15 C -0.154 4.154 16 C -0.176 4.176 17 C -0.107 4.107 18 C 0.167 3.833 19 N -0.645 5.645 20 C -0.235 4.235 21 H 0.084 0.916 22 C -0.068 4.068 23 N -0.954 5.954 24 Si 0.978 3.022 25 H -0.265 1.265 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.129 3.871 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.001 0.999 44 H 0.043 0.957 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.733 -4.064 18.947 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.075 0.925 4 N -0.358 5.358 5 C 0.309 3.691 6 O -0.460 6.460 7 C -0.156 4.156 8 H 0.139 0.861 9 C -0.177 4.177 10 C -0.036 4.036 11 O -0.298 6.298 12 C 0.067 3.933 13 H 0.085 0.915 14 C -0.188 4.188 15 C -0.191 4.191 16 C -0.213 4.213 17 C -0.127 4.127 18 C 0.042 3.958 19 N -0.372 5.372 20 C -0.363 4.363 21 H 0.102 0.898 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.806 3.194 25 H -0.189 1.189 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.004 3.996 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.019 0.981 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.633 -3.286 18.946 21.507 hybrid contribution 1.004 0.041 -1.364 1.694 sum -8.628 -3.244 17.582 19.852 Atomic orbital electron populations 1.22035 0.93269 1.03185 1.02170 1.20820 0.95094 0.95716 0.83021 0.92518 1.45975 1.66376 1.14650 1.08793 1.20684 0.76635 0.86685 0.85073 1.90679 1.52038 1.17677 1.85567 1.22681 1.03070 0.97413 0.92461 0.86064 1.22988 0.99077 0.97976 0.97645 1.23632 0.90837 0.94798 0.94296 1.89117 1.56326 1.51234 1.33154 1.22116 0.95132 0.91999 0.84010 0.91513 1.22293 0.96386 1.05862 0.94246 1.22913 0.99737 0.97457 0.98946 1.22996 1.03527 0.93981 1.00750 1.23432 0.96083 1.00589 0.92604 1.22184 0.94135 0.96391 0.83137 1.46452 1.05914 1.82828 1.01975 1.19495 0.91971 1.40417 0.84442 0.89783 1.25630 0.96756 1.02956 1.00779 1.70011 1.05823 1.56748 1.27720 0.85015 0.78201 0.76821 0.79325 1.18877 1.22262 1.21603 1.22686 0.87655 0.97462 0.91779 0.90491 0.93208 0.90949 0.75057 0.89178 0.87298 0.92214 0.86356 0.87677 0.87857 0.87922 0.88057 0.88912 0.87531 0.98106 0.93865 0.94334 0.91656 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.31 71.98 0.67 -2.78 16 2 C 0.16 4.58 2.38 44.99 0.11 4.68 16 3 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16 4 N -0.71 -17.29 4.97 -442.55 -2.20 -19.48 16 5 C 0.52 13.93 6.95 87.66 0.61 14.54 16 6 O -0.58 -20.28 15.16 -3.01 -0.05 -20.33 16 7 C -0.13 -2.73 3.04 -10.52 -0.03 -2.76 16 8 H 0.12 2.28 7.87 -2.39 -0.02 2.26 16 9 C -0.14 -1.90 6.66 31.61 0.21 -1.69 16 10 C 0.04 0.60 7.65 72.48 0.55 1.15 16 11 O -0.38 -7.91 9.78 -148.98 -1.46 -9.37 16 12 C 0.13 2.89 2.97 31.10 0.09 2.98 16 13 H 0.07 1.86 6.97 -2.39 -0.02 1.85 16 14 C -0.17 -3.84 5.60 -10.79 -0.06 -3.90 16 15 C -0.15 -2.93 9.89 30.62 0.30 -2.62 16 16 C -0.18 -3.56 10.25 30.62 0.31 -3.25 16 17 C -0.11 -3.61 3.47 -10.13 -0.04 -3.65 16 18 C 0.17 7.86 7.08 86.44 0.61 8.47 16 19 N -0.65 -32.99 3.70 -716.13 -2.65 -35.64 16 20 C -0.23 -13.23 10.70 84.03 0.90 -12.33 16 21 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.95 -57.84 11.39 21.65 0.25 -57.60 16 24 Si 0.98 45.83 29.55 68.60 2.03 47.85 16 25 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 28 C 0.13 4.95 7.64 86.49 0.66 5.61 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.63 7.52 -2.39 -0.02 1.61 16 32 H 0.41 7.98 8.59 -92.70 -0.80 7.19 16 33 H 0.09 1.13 7.68 -2.39 -0.02 1.11 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.11 2.55 8.13 -2.38 -0.02 2.53 16 38 H 0.10 2.00 7.07 -2.39 -0.02 1.98 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.00 0.06 7.99 -2.39 -0.02 0.04 16 44 H 0.04 2.26 7.16 -2.39 -0.02 2.24 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 Total: -1.00 -72.69 377.01 1.45 -71.24 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.16 Total: 22.31 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 5.37 Total: 1.02 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.60 Total: -112.72 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.50 Total: -29.70 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -72.69 1.45 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970192863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.602 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds