Wall clock time and date at job start Fri Apr 10 2020 17:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 120.00249 * 2 1 4 4 C 1.50704 * 119.99954 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.41661 * 127.71300 * 4 2 1 6 6 O 1.44422 * 110.37217 * 5.40752 * 4 2 1 7 7 C 1.44425 * 105.28037 * 200.65505 * 6 4 2 8 8 C 1.54802 * 104.80036 * 40.58410 * 7 6 4 9 9 C 1.54481 * 110.37356 * 250.02642 * 4 2 1 10 10 H 1.09001 * 110.50774 * 261.45359 * 9 4 2 11 11 C 1.50696 * 110.51361 * 24.02723 * 9 4 2 12 12 O 1.21286 * 119.99978 * 67.35694 * 11 9 4 13 13 N 1.34780 * 119.99798 * 247.36403 * 11 9 4 14 14 C 1.46495 * 119.99661 * 179.97438 * 13 11 9 15 15 H 1.09004 * 109.47335 * 34.99789 * 14 13 11 16 16 C 1.53008 * 109.47184 * 274.99792 * 14 13 11 17 17 C 1.52998 * 109.47420 * 154.99733 * 14 13 11 18 18 C 1.53946 * 113.74078 * 276.67855 * 17 14 13 19 19 N 1.47585 * 86.11617 * 222.04012 * 18 17 14 20 20 C 1.36930 * 134.49357 * 204.63483 * 19 18 17 21 21 H 1.08008 * 119.99860 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00412 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99771 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00378 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47117 * 60.00274 * 24 22 20 26 26 H 1.48501 * 109.47324 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47373 * 300.00218 * 24 22 20 28 28 C 1.47586 * 91.01003 * 24.64025 * 19 18 17 29 29 H 1.07999 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00166 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47410 * 155.08179 * 3 2 1 32 32 H 1.09002 * 109.46914 * 275.07479 * 3 2 1 33 33 H 1.08995 * 109.47569 * 35.07400 * 3 2 1 34 34 H 1.08994 * 110.37472 * 159.34059 * 7 6 4 35 35 H 1.08997 * 110.36908 * 281.57521 * 7 6 4 36 36 H 1.08999 * 110.55513 * 217.33934 * 8 7 6 37 37 H 1.08999 * 110.61041 * 94.52888 * 8 7 6 38 38 H 0.96995 * 120.00124 * 0.02562 * 13 11 9 39 39 H 1.08995 * 109.47011 * 300.00063 * 16 14 13 40 40 H 1.08997 * 109.46647 * 60.00273 * 16 14 13 41 41 H 1.09002 * 109.46695 * 179.97438 * 16 14 13 42 42 H 1.08999 * 112.93925 * 48.40720 * 17 14 13 43 43 H 1.08998 * 113.76916 * 336.34250 * 18 17 14 44 44 H 1.09001 * 113.77341 * 107.74274 * 18 17 14 45 45 H 0.96995 * 119.99923 * 179.97438 * 23 22 20 46 46 H 1.09009 * 113.76448 * 221.05582 * 28 19 18 47 47 H 1.08994 * 113.87307 * 89.67538 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.7948 -1.3224 -0.8075 6 8 1.1476 -2.4145 -0.1265 7 6 1.8684 -3.5623 0.3724 8 6 2.6296 -3.0414 1.6156 9 6 2.7608 -1.5230 1.3617 10 1 3.8104 -1.2347 1.3036 11 6 2.0600 -0.7440 2.4448 12 8 0.9364 -1.0513 2.7825 13 7 2.6817 0.2944 3.0379 14 6 2.0002 1.0519 4.0904 15 1 1.3784 0.3774 4.6791 16 6 1.1215 2.1311 3.4544 17 6 3.0397 1.7109 4.9992 18 6 3.5843 0.7780 6.0960 19 7 3.4722 1.9396 6.9994 20 6 4.0898 2.3136 8.1629 21 1 3.8189 3.2420 8.6438 22 6 5.0639 1.4996 8.7244 23 7 5.3936 0.3679 8.1387 24 14 5.9069 2.0101 10.3113 25 1 4.8931 2.1507 11.3872 26 1 6.9004 0.9766 10.6987 27 1 6.5976 3.3090 10.1092 28 6 2.4270 2.5362 6.1451 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 3.0523 1.1537 0.4330 32 1 2.1665 1.6651 -1.0237 33 1 1.5169 2.0403 0.5905 34 1 1.1736 -4.3521 0.6576 35 1 2.5684 -3.9268 -0.3794 36 1 3.6143 -3.5039 1.6830 37 1 2.0557 -3.2287 2.5232 38 1 3.5801 0.5404 2.7675 39 1 1.7432 2.8056 2.8658 40 1 0.3809 1.6616 2.8071 41 1 0.6140 2.6945 4.2376 42 1 3.8155 2.2386 4.4444 43 1 2.9122 -0.0419 6.3491 44 1 4.6102 0.4515 5.9256 45 1 6.0746 -0.2007 8.5308 46 1 2.5289 3.6135 6.0139 47 1 1.4142 2.2341 6.4113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970572385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:59:52 Heat of formation + Delta-G solvation = -10.195218 kcal Electronic energy + Delta-G solvation = -26756.294553 eV Core-core repulsion = 23134.421487 eV Total energy + Delta-G solvation = -3621.873067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 308.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72389 -38.89366 -37.72252 -35.14544 -34.66209 -32.59423 -32.06890 -30.33021 -28.69834 -27.51340 -27.23225 -25.01090 -24.27622 -23.63547 -22.41254 -20.92902 -20.24540 -19.23757 -18.42063 -17.20271 -16.83860 -16.48311 -15.88916 -15.72644 -15.40379 -14.89574 -14.62440 -14.12348 -13.88394 -13.79596 -13.48229 -13.36709 -13.15621 -12.91471 -12.53011 -12.33969 -12.08531 -12.05596 -11.78226 -11.61670 -11.41163 -11.30719 -11.27757 -11.26430 -10.95642 -10.88893 -10.72283 -10.34603 -10.03317 -9.93427 -9.73373 -9.52479 -9.35201 -9.02977 -8.78763 -8.68610 -6.86662 -5.76170 -3.08309 2.19248 2.81649 3.34472 3.39569 3.43621 3.44740 3.66020 4.27837 4.45742 4.60474 4.68388 4.85073 4.94016 5.03571 5.10637 5.12535 5.20733 5.29783 5.32349 5.36609 5.42472 5.52665 5.54345 5.56857 5.63915 5.69532 5.83719 5.87607 5.89922 5.96832 6.00987 6.07352 6.28348 6.39736 6.44096 6.48421 6.61260 6.61606 6.70204 6.87156 6.93761 7.24156 7.37810 7.56554 7.76961 7.99173 8.49465 9.05491 9.71600 10.61439 11.40838 Molecular weight = 308.19amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.003293 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.421542 B = 8501.320817 C = 9259.375263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.153 4.153 3 C -0.111 4.111 4 C 0.134 3.866 5 H 0.082 0.918 6 O -0.360 6.360 7 C 0.049 3.951 8 C -0.140 4.140 9 C -0.139 4.139 10 H 0.099 0.901 11 C 0.529 3.471 12 O -0.531 6.531 13 N -0.717 5.717 14 C 0.153 3.847 15 H 0.085 0.915 16 C -0.157 4.157 17 C -0.146 4.146 18 C 0.171 3.829 19 N -0.612 5.612 20 C -0.224 4.224 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.130 3.870 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.396 0.604 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.253 0.747 46 H 0.043 0.957 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 -2.889 -19.846 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C -0.168 4.168 4 C 0.075 3.925 5 H 0.099 0.901 6 O -0.278 6.278 7 C -0.028 4.028 8 C -0.178 4.178 9 C -0.160 4.160 10 H 0.117 0.883 11 C 0.314 3.686 12 O -0.407 6.407 13 N -0.367 5.367 14 C 0.048 3.952 15 H 0.103 0.897 16 C -0.215 4.215 17 C -0.166 4.166 18 C 0.046 3.954 19 N -0.338 5.338 20 C -0.351 4.351 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.003 3.997 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.515 -3.136 -19.379 20.391 hybrid contribution 1.159 0.259 1.006 1.557 sum -4.356 -2.876 -18.373 19.100 Atomic orbital electron populations 1.23657 0.95350 1.02022 0.97082 1.21389 0.95854 0.93683 1.04352 1.20780 1.00046 0.94100 1.01834 1.21577 0.90405 0.86466 0.94004 0.90054 1.89138 1.37347 1.16849 1.84498 1.23431 0.95686 0.89691 0.93995 1.22976 1.01889 0.92301 1.00610 1.22735 1.01018 0.96941 0.95356 0.88254 1.19966 0.86456 0.80152 0.81991 1.90691 1.18581 1.67892 1.63526 1.46134 1.19138 1.32247 1.39176 1.21028 0.93929 0.92613 0.87603 0.89706 1.22142 0.99667 0.98622 1.01107 1.23799 0.97539 1.00161 0.95056 1.22248 0.99485 0.89517 0.84146 1.45949 1.40700 1.21080 1.26118 1.18989 1.14331 1.03607 0.98201 0.90353 1.24771 0.99697 0.96731 0.99218 1.69810 1.34262 1.12605 1.40250 0.86209 0.79083 0.77391 0.83134 1.21197 1.21561 1.21099 1.22493 0.92638 0.96282 0.88286 0.88796 0.87382 0.92070 0.91712 0.91236 0.88833 0.92172 0.89765 0.89304 0.77009 0.92861 0.92700 0.91682 0.89518 0.95770 0.91120 0.93657 0.93853 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 13.32 29.02 0.39 -1.37 16 2 C -0.15 -1.70 3.78 -101.07 -0.38 -2.08 16 3 C -0.11 -1.00 9.67 36.00 0.35 -0.65 16 4 C 0.13 1.43 3.53 -27.10 -0.10 1.33 16 5 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 6 O -0.36 -4.42 9.81 -35.23 -0.35 -4.77 16 7 C 0.05 0.46 7.64 38.11 0.29 0.75 16 8 C -0.14 -1.42 6.63 -24.99 -0.17 -1.59 16 9 C -0.14 -1.49 3.25 -90.20 -0.29 -1.78 16 10 H 0.10 0.82 8.00 -51.93 -0.42 0.40 16 11 C 0.53 7.38 4.77 -10.99 -0.05 7.32 16 12 O -0.53 -9.44 15.59 5.55 0.09 -9.35 16 13 N -0.72 -9.39 5.08 -53.80 -0.27 -9.66 16 14 C 0.15 2.33 2.42 -67.93 -0.16 2.16 16 15 H 0.08 1.54 7.37 -51.93 -0.38 1.15 16 16 C -0.16 -2.07 9.25 37.16 0.34 -1.73 16 17 C -0.15 -2.57 3.50 -89.70 -0.31 -2.89 16 18 C 0.17 3.98 7.07 -2.97 -0.02 3.96 16 19 N -0.61 -15.74 3.70 -177.90 -0.66 -16.40 16 20 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.38 11.38 55.49 0.63 -26.75 16 24 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 28 C 0.13 2.60 7.56 -2.98 -0.02 2.58 16 29 H 0.09 1.02 8.05 -52.49 -0.42 0.60 16 30 H 0.11 1.47 6.90 -52.49 -0.36 1.10 16 31 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.66 8.07 -51.93 -0.42 0.25 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.11 7.37 -51.93 -0.38 0.73 16 38 H 0.40 4.35 8.50 -40.82 -0.35 4.00 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.85 7.43 -51.93 -0.39 0.46 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.02 0.60 7.96 -51.93 -0.41 0.19 16 44 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 47 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -33.66 377.24 -8.38 -42.04 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.08 Total: 2.81 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.40 Total: -0.77 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.30 Total: -52.81 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.26 Total: -14.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.66 -8.38 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970572385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.841 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds